genome.fa.s201.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  19  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3296033--3296139	3	39.3	3	70	22	76	35	0	2	60	1.17
3296033--3296138	5	21.2	5	80	12	112	35	0	2	60	1.18
3300844--3301048	102	2.0	102	98	0	392	32	21	16	30	1.95
3305710--3305774	33	2.0	33	84	0	85	30	12	16	40	1.86
3306068--3306177	42	2.8	40	77	10	102	32	17	13	36	1.89
3306113--3306268	43	3.7	43	80	5	165	26	14	19	39	1.91
3306113--3306285	85	2.0	85	83	4	215	26	13	18	41	1.88
3306447--3306472	12	2.2	12	100	0	52	84	0	0	15	0.62
3307195--3307228	17	2.0	17	88	11	52	23	0	0	76	0.79
3310946--3310994	19	2.6	19	78	12	64	53	8	0	38	1.31
3310853--3311099	10	25.5	10	68	14	101	54	6	1	37	1.37
3310854--3311099	30	8.5	29	70	13	114	54	6	1	36	1.37
3312566--3312664	9	10.6	9	77	15	69	58	8	2	31	1.38
3312630--3312677	20	2.3	22	89	10	82	54	4	0	41	1.20
3312632--3312680	21	2.4	21	96	3	91	51	6	0	42	1.27
3312671--3312705	18	2.0	17	94	5	61	62	5	0	31	1.18
3312731--3312796	10	6.5	10	74	8	53	66	3	1	28	1.15
3312744--3312770	10	2.7	10	100	0	54	62	0	0	37	0.95
3312866--3312919	18	2.9	18	82	12	74	59	7	0	33	1.25
3313087--3313139	19	2.7	20	79	5	63	71	0	0	28	0.86
3313204--3313273	19	3.5	20	77	14	65	24	0	7	68	1.14
3313195--3313265	19	3.8	19	80	7	74	23	0	7	69	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3313283--3313335	28	2.0	26	85	7	70	37	3	3	54	1.36
3313326--3313375	26	2.0	26	88	11	77	22	2	4	72	1.12
3313426--3313463	20	2.0	20	94	5	69	42	5	5	47	1.48
3313507--3313553	19	2.5	20	82	10	62	34	4	0	61	1.15
3313509--3313553	18	2.4	19	81	7	56	33	4	0	62	1.15
3313507--3313552	20	2.4	19	85	10	58	32	4	0	63	1.14
3313529--3313601	10	7.6	9	77	10	65	28	2	8	60	1.40
3313545--3313611	20	3.3	20	82	14	75	29	1	11	56	1.44
3313578--3313621	20	2.2	20	83	0	52	34	4	6	54	1.47
3313677--3313774	10	9.8	10	69	15	51	31	1	6	61	1.27
3313701--3313786	18	4.4	19	72	15	61	36	1	6	55	1.34
3327550--3327585	17	2.1	18	89	5	56	27	0	0	72	0.85
3328082--3328176	47	2.0	47	97	0	181	25	13	16	44	1.85
3331128--3331152	2	12.5	2	100	0	50	52	0	0	48	1.00
3333491--3333526	18	2.0	18	88	0	54	33	0	0	66	0.92
3336839--3336884	20	2.5	18	82	10	58	47	6	0	45	1.28
3337078--3337127	20	2.4	21	78	12	50	44	12	2	42	1.53
3337100--3337208	31	3.5	31	81	2	119	45	7	4	42	1.52
3337117--3337209	32	3.0	31	82	3	114	45	5	4	45	1.46
3337285--3337329	24	1.9	24	86	4	65	51	6	0	42	1.28
3337807--3337837	16	1.9	16	93	0	53	41	0	3	54	1.16
3341667--3341716	20	2.4	21	90	6	84	16	0	26	58	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3344558--3344599	2	21.0	2	87	0	57	42	2	4	50	1.36
3348564--3348610	22	2.1	22	96	0	85	25	0	21	53	1.46
3355454--3355622	85	2.0	86	89	1	259	42	8	13	35	1.76
3356351--3356515	62	2.7	62	81	9	198	33	13	5	47	1.66
3356541--3356600	17	3.6	16	78	12	68	76	0	8	15	1.00
3356539--3356603	22	3.0	21	84	8	85	76	0	9	13	1.00
3356539--3356614	5	14.2	5	76	10	62	75	0	7	17	1.04
3357496--3357554	22	2.7	21	84	10	66	66	6	5	22	1.36
3357489--3357554	21	3.2	21	81	14	75	65	6	6	22	1.38
3357668--3357727	6	11.0	5	83	15	59	76	1	1	20	0.96
3357673--3357727	16	3.4	15	85	9	65	78	0	1	20	0.85
3357645--3357740	11	8.5	11	77	14	79	76	1	4	18	1.01
3357808--3357905	40	2.5	40	84	3	126	56	4	10	29	1.51
3358184--3358228	22	2.0	23	86	4	65	60	0	2	37	1.09
3363316--3363354	20	2.0	20	95	5	71	12	35	0	51	1.40
3364938--3364992	20	2.6	21	75	13	60	63	0	9	27	1.24
3368670--3368711	20	2.1	20	83	16	52	57	0	0	42	0.99
3369058--3369100	19	2.3	19	88	8	61	41	0	0	58	0.98
3369907--3369952	19	2.4	19	96	0	83	58	6	23	10	1.55
3371991--3372025	2	17.5	2	93	0	61	48	0	2	48	1.16
3372412--3372459	13	3.5	15	78	13	50	56	2	0	41	1.11
3372427--3372462	14	2.4	16	82	17	51	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3373703--3373749	24	2.0	24	86	0	67	31	8	34	25	1.86
3373726--3373876	66	2.3	65	83	4	203	43	6	26	23	1.78
3380896--3380926	14	2.2	14	94	0	53	70	0	3	25	1.02
3380905--3380978	26	2.8	27	75	8	80	64	2	4	28	1.25
3383503--3383554	22	2.3	23	78	12	63	71	0	1	26	0.97
3383801--3383834	9	3.8	9	88	0	50	5	5	0	88	0.64
3384470--3384504	9	3.8	9	88	7	52	85	0	14	0	0.59
3384811--3385157	49	7.1	49	76	7	319	39	18	12	29	1.87
3384775--3385056	99	2.8	98	78	7	284	40	17	11	30	1.86
3384812--3385162	99	3.6	96	78	7	314	39	18	12	30	1.87
3397577--3397630	20	2.7	21	80	8	58	66	1	1	29	1.12
3397598--3397634	19	2.0	20	89	10	60	70	0	0	29	0.88
3400412--3400479	32	2.1	32	97	0	127	39	13	5	41	1.68
3400581--3400663	41	2.0	41	86	9	116	54	2	8	34	1.44
3404838--3404869	10	3.2	10	95	0	55	43	0	6	50	1.27
3404838--3404873	14	2.6	14	90	0	54	41	0	8	50	1.33
3404917--3404954	19	2.1	18	90	5	58	26	0	0	73	0.83
3412481--3412516	2	18.0	2	100	0	72	0	50	0	50	1.00
3414867--3414940	36	2.1	35	87	7	105	62	0	6	31	1.21
3414875--3414959	36	2.3	37	80	8	102	63	2	4	29	1.27
3417484--3417524	21	2.0	21	85	0	55	68	0	2	29	1.03
3418769--3419062	49	6.0	50	78	4	260	42	17	11	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3418768--3419062	99	3.0	97	81	4	306	43	17	11	27	1.84
3418885--3419075	97	2.0	98	85	5	262	39	18	13	28	1.88
3423360--3423411	25	2.0	26	82	10	63	67	1	19	11	1.31
3423377--3423423	13	3.6	13	81	13	53	74	2	14	8	1.15
3423375--3423423	19	2.5	19	78	15	55	73	2	14	10	1.18
3432132--3432179	21	2.4	21	86	6	64	14	2	12	70	1.25
3434805--3434846	20	2.1	20	83	16	52	57	0	2	40	1.12
3435160--3435206	22	2.1	23	84	11	62	44	2	0	53	1.12
3436461--3436522	33	2.0	29	84	12	79	58	3	0	38	1.15
3437563--3437609	24	2.0	24	86	0	67	29	8	36	25	1.86
3437590--3437744	66	2.3	66	86	0	211	38	7	31	22	1.81
3439509--3439573	19	3.5	19	65	12	53	26	7	26	40	1.83
3439500--3439573	37	2.0	37	94	0	130	25	9	22	41	1.84
3456411--3456463	3	17.7	3	100	0	106	32	0	0	67	0.91
3457878--3457907	2	15.0	2	100	0	60	50	0	0	50	1.00
3468845--3468878	15	2.3	15	90	10	52	67	8	0	23	1.18
3469955--3469981	2	13.5	2	100	0	54	48	0	0	51	1.00
3471946--3472021	31	2.5	31	88	0	107	36	11	11	39	1.79
3472787--3472823	19	1.9	19	88	0	56	10	2	10	75	1.14
3474506--3474547	21	2.0	21	81	9	50	52	0	2	45	1.13
3482561--3482602	21	2.0	21	95	0	75	26	4	11	57	1.54
3483500--3483561	31	2.0	31	96	0	115	25	30	4	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3484391--3484424	2	17.0	2	87	0	50	50	2	0	47	1.16
3486497--3486581	31	2.7	30	76	18	77	56	1	2	40	1.20
3487405--3487466	4	15.2	4	77	9	54	19	1	6	72	1.15
3487407--3487466	29	2.1	29	83	0	75	18	1	6	73	1.14
3487400--3487447	17	2.9	17	87	9	64	14	2	8	75	1.13
3487755--3487850	43	2.3	41	82	10	113	43	8	7	40	1.62
3487854--3487939	38	2.4	35	75	14	86	44	10	9	36	1.71
3489153--3489203	3	17.0	3	95	0	93	33	0	1	64	1.05
3493147--3493185	18	2.2	18	90	0	60	56	0	0	43	0.99
3494169--3494211	21	2.0	23	86	9	63	39	2	0	58	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91