genome.fa.s201.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  36  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6153530--6153635	55	1.9	56	86	1	151	30	8	12	49	1.70
6153586--6153800	46	4.6	47	76	5	195	30	10	14	44	1.79
6153584--6153837	46	5.5	47	75	10	139	31	9	13	46	1.75
6153887--6153930	18	2.3	20	84	7	56	72	6	2	18	1.17
6153865--6153929	19	3.4	19	81	12	62	75	9	1	13	1.11
6153867--6153910	20	2.3	19	80	4	52	81	9	0	9	0.87
6154494--6154521	13	2.2	13	100	0	56	57	7	7	28	1.52
6156282--6156309	6	4.7	6	100	0	56	71	0	0	28	0.86
6156601--6156720	8	15.4	8	77	10	88	52	27	1	18	1.55
6156616--6156666	17	3.1	17	83	8	70	56	27	0	15	1.39
6156616--6156720	15	6.7	15	76	16	88	53	26	0	19	1.51
6156616--6156720	24	4.5	23	80	6	97	53	26	0	19	1.51
6156600--6156775	54	3.3	53	80	7	176	49	26	2	22	1.61
6156714--6156765	23	2.3	23	90	6	79	46	21	3	28	1.69
6156687--6156772	23	3.8	23	76	13	72	50	22	2	25	1.61
6161503--6161546	20	2.2	20	87	0	61	4	18	0	77	0.94
6161502--6161546	15	2.9	16	87	6	58	6	17	0	75	1.01
6161518--6161551	10	3.4	10	87	0	50	2	11	0	85	0.71
6161764--6161791	13	2.2	13	100	0	56	7	7	0	85	0.73
6161990--6162088	20	5.1	19	70	18	71	29	5	12	53	1.59
6162073--6162110	17	2.2	17	90	0	58	39	5	5	50	1.48
6162194--6162245	23	2.2	25	86	13	74	32	3	7	55	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6162876--6162918	22	2.0	22	90	9	70	27	2	4	65	1.25
6163547--6163817	128	2.1	130	82	6	318	28	10	12	47	1.75
6165087--6165125	16	2.6	16	88	8	55	82	5	10	2	0.93
6165087--6165160	21	3.5	21	80	8	87	81	2	9	6	0.97
6165087--6165161	7	10.6	7	78	13	64	80	2	10	6	1.00
6165114--6165169	21	2.7	20	81	10	67	75	0	12	12	1.06
6165422--6165457	18	1.9	19	88	5	56	80	0	8	11	0.90
6166850--6166924	23	3.4	21	75	15	62	29	10	14	45	1.79
6166881--6167009	36	3.6	36	80	5	134	31	7	17	43	1.77
6167514--6167722	38	5.7	37	73	10	153	32	13	14	39	1.85
6167578--6167723	38	3.8	39	80	3	154	34	10	13	40	1.80
6167759--6167851	37	2.5	38	80	7	118	38	10	11	38	1.77
6169890--6169928	19	2.1	19	85	9	53	10	5	7	76	1.13
6170202--6170247	24	1.9	24	90	0	74	36	2	6	54	1.39
6170221--6170289	32	2.2	31	89	2	102	33	1	4	60	1.25
6170369--6170515	3	47.7	3	74	17	115	33	2	3	61	1.24
6170853--6170901	22	2.2	23	77	7	55	28	4	22	44	1.71
6171314--6171359	17	2.7	18	80	6	60	21	0	4	73	1.00
6171383--6171425	19	2.4	17	88	7	59	23	0	2	74	0.93
6171383--6171431	19	2.7	18	79	17	57	24	0	2	73	0.94
6172165--6172216	23	2.3	22	76	23	54	23	5	11	59	1.53
6174757--6174790	17	1.9	18	94	5	61	17	14	0	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6174761--6174815	17	3.3	17	80	19	55	23	7	0	69	1.14
6174784--6174834	15	3.4	15	82	15	61	27	0	1	70	0.98
6174794--6174843	14	3.4	15	83	10	59	26	0	4	70	1.05
6174934--6174970	12	3.2	12	77	14	51	67	10	2	18	1.32
6180151--6180197	24	2.0	24	86	0	67	76	8	6	8	1.15
6180865--6180904	18	2.2	18	90	0	62	17	2	2	77	0.99
6180935--6181004	14	5.4	12	69	12	50	71	1	4	22	1.12
6180938--6181018	17	4.5	18	72	15	62	70	1	4	23	1.14
6183385--6183454	35	2.0	35	91	0	113	38	17	12	31	1.87
6186728--6186756	14	2.1	14	100	0	58	20	6	6	65	1.40
6192408--6192451	20	2.2	20	83	4	52	34	4	13	47	1.63
6192751--6192829	39	2.0	39	100	0	158	45	7	25	21	1.78
6196702--6196726	13	1.9	13	100	0	50	92	0	8	0	0.40
6200431--6200476	19	2.4	19	85	10	58	45	15	6	32	1.71
6199736--6200899	320	3.6	318	76	9	1025	43	14	9	32	1.78
6199674--6200899	161	7.6	160	76	7	887	42	14	9	33	1.78
6199740--6200899	481	2.4	481	77	8	1179	43	14	9	32	1.78
6202025--6202073	13	3.7	13	86	2	62	57	12	4	26	1.53
6205307--6205364	30	2.0	28	87	9	82	44	5	5	44	1.48
6205760--6205849	27	3.2	27	71	20	76	42	4	13	40	1.64
6205307--6205914	59	10.7	57	76	11	455	46	5	10	37	1.61
6209733--6209888	84	1.9	84	81	5	190	29	12	18	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6213680--6213896	59	3.7	58	91	3	348	34	13	8	44	1.74
6213680--6213897	116	1.9	118	95	3	397	33	13	8	44	1.73
6213976--6214042	8	8.4	8	79	12	50	83	4	1	10	0.85
6214947--6214986	15	2.5	17	77	22	50	75	2	5	17	1.10
6215160--6215216	20	2.8	20	89	5	89	21	28	31	19	1.97
6215313--6215379	1	67.0	1	78	0	71	0	0	10	89	0.48
6215305--6215379	8	9.5	8	82	15	77	0	0	12	88	0.53
6215313--6215378	20	3.4	19	93	6	114	0	0	10	89	0.49
6215306--6215379	28	2.6	28	89	8	107	0	0	12	87	0.53
6215306--6215364	6	9.8	6	80	15	61	0	0	13	86	0.57
6215386--6215912	40	13.0	40	89	6	719	38	21	17	22	1.93
6215386--6215912	81	6.5	81	91	6	772	38	21	17	22	1.93
6215386--6215912	121	4.3	122	95	2	884	38	21	17	22	1.93
6217110--6217148	20	1.9	20	89	5	60	2	17	0	79	0.84
6217117--6217153	18	2.1	18	90	5	58	2	13	0	83	0.74
6217091--6217166	31	2.4	33	87	12	108	6	15	0	77	0.96
6220982--6221315	57	5.7	58	89	4	521	33	13	8	44	1.75
6220982--6221324	116	2.9	116	95	2	616	32	13	9	44	1.75
6221943--6221996	25	2.2	24	83	6	63	40	18	5	35	1.74
6222398--6222439	18	2.3	19	80	12	52	61	7	0	30	1.22
6222483--6222516	3	10.7	3	87	12	50	64	2	0	32	1.08
6222591--6222647	20	2.8	20	94	5	98	19	29	31	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6223586--6223635	16	3.0	17	85	8	59	20	0	8	72	1.10
6223572--6223723	3	55.0	3	68	18	64	31	1	4	61	1.27
6223651--6223792	5	27.2	5	85	7	144	37	0	3	59	1.15
6223731--6223793	6	10.2	6	88	11	92	34	0	1	63	1.04
6224613--6224705	6	15.7	6	72	18	61	18	3	2	76	1.02
6224614--6224705	18	5.5	17	72	16	68	18	3	2	76	1.03
6224613--6224705	30	3.1	28	75	18	73	18	3	2	76	1.02
6224626--6224706	5	15.0	5	73	24	51	22	1	2	74	1.01
6224625--6224700	25	3.1	24	79	12	75	21	1	2	75	1.00
6224635--6224726	36	2.4	38	75	10	100	22	2	3	71	1.11
6224693--6224754	27	2.2	30	83	13	87	24	6	4	64	1.37
6224633--6224731	31	3.3	29	78	16	78	22	2	3	72	1.08
6224646--6224733	37	2.5	35	77	18	85	23	2	3	70	1.14
6228011--6228162	61	2.5	62	77	8	152	36	5	21	37	1.76
6228856--6228894	19	2.1	19	86	13	55	53	10	7	28	1.62
6229335--6229539	12	16.3	13	72	15	121	19	1	34	44	1.62
6229321--6229436	31	3.8	32	80	12	127	17	0	36	45	1.54
6229337--6229435	19	5.3	19	79	13	82	16	0	37	46	1.47
6229337--6229539	7	31.1	7	70	18	93	19	1	34	44	1.62
6229325--6229418	19	5.2	18	81	12	88	14	1	38	45	1.53
6229669--6229708	20	2.0	20	85	9	55	17	0	32	50	1.47
6233423--6233487	26	2.4	27	80	10	71	21	1	6	70	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6234034--6234071	3	12.7	3	94	0	67	68	28	0	2	1.03
6235251--6235610	40	9.3	39	80	6	329	40	19	13	26	1.89
6235225--6235610	79	5.0	79	76	7	324	40	19	13	26	1.89
6235278--6235642	111	3.2	113	80	5	335	41	20	12	26	1.88
6235251--6235647	151	2.6	151	79	8	369	41	19	12	26	1.87
6235744--6235810	34	2.0	34	87	0	98	34	19	17	28	1.95
6238290--6238358	35	2.0	35	91	0	111	27	10	21	40	1.85
6247819--6247843	12	2.1	12	100	0	50	16	16	0	68	1.22
6248343--6248368	3	8.7	3	100	0	52	69	30	0	0	0.89
6248425--6248477	5	10.6	5	85	0	70	75	3	1	18	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91