genome.fa.s201.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  76  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12632004--12632029	3	8.7	3	100	0	52	30	0	0	69	0.89
12632601--12632644	20	2.2	20	95	0	79	38	31	25	4	1.76
12632599--12632715	61	1.9	62	82	5	148	32	29	21	17	1.96
12632661--12632705	20	2.2	20	84	0	54	33	28	22	15	1.95
12632941--12632982	14	3.1	15	80	19	56	7	42	21	28	1.79
12632941--12632977	13	2.7	14	80	20	51	8	43	24	24	1.81
12633041--12633070	11	2.7	11	100	0	60	13	0	6	80	0.91
12633101--12633549	152	3.0	151	95	1	799	30	14	17	38	1.89
12634169--12634248	22	3.6	22	77	0	79	31	7	10	51	1.63
12634220--12634290	22	3.2	22	80	7	81	40	5	9	43	1.61
12634449--12634531	22	3.7	22	79	3	94	34	6	6	53	1.50
12634772--12634964	22	8.8	22	77	5	133	41	7	5	45	1.57
12634813--12634964	44	3.5	44	84	6	191	42	5	7	44	1.56
12634772--12634964	66	2.9	66	81	4	194	41	7	5	45	1.57
12634950--12635013	22	2.9	22	83	4	67	48	7	0	43	1.32
12634961--12635015	22	2.5	22	87	0	83	47	9	0	43	1.35
12634961--12635027	22	3.0	22	84	0	71	44	10	2	41	1.54
12635044--12635496	22	20.6	22	71	9	156	35	8	6	48	1.61
12634965--12635104	44	3.2	43	71	8	102	40	8	5	45	1.58
12635321--12635421	11	9.2	11	67	12	55	37	3	3	54	1.38
12635249--12635431	66	2.8	66	79	11	180	36	7	4	51	1.51
12635300--12635576	22	12.5	21	71	14	103	35	7	4	51	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12635880--12635975	22	4.4	22	75	7	79	35	10	3	51	1.52
12635928--12635968	21	2.0	20	85	4	55	36	7	2	53	1.42
12636008--12636068	22	2.8	22	90	5	88	32	1	3	62	1.21
12636094--12636156	22	2.9	22	82	0	81	34	4	3	57	1.36
12636138--12636193	22	2.5	22	83	11	62	42	5	3	48	1.43
12637164--12637191	2	14.0	2	100	0	56	50	0	0	50	1.00
12638691--12638742	23	2.2	24	83	12	65	34	1	5	57	1.33
12639190--12639506	153	2.0	158	83	7	396	44	5	7	42	1.54
12643066--12643175	18	5.3	20	66	27	54	27	1	3	67	1.17
12643787--12643828	20	2.1	20	90	0	66	23	23	21	30	1.99
12643863--12643906	20	2.3	18	81	11	52	52	0	47	0	1.00
12644253--12644293	21	1.9	22	90	5	66	14	9	2	73	1.19
12644230--12644297	9	7.2	9	72	21	50	13	8	1	76	1.08
12648290--12648349	12	5.3	12	79	13	58	78	0	15	6	0.95
12649613--12649735	42	2.9	42	92	1	210	21	20	22	34	1.96
12649314--12650619	463	3.0	421	92	5	2053	30	18	19	31	1.96
12650034--12650198	42	3.9	42	95	0	303	21	20	23	34	1.97
12650497--12650796	42	7.1	42	90	1	451	23	17	23	35	1.95
12650803--12650902	9	11.2	9	78	11	91	83	14	0	3	0.77
12650803--12650902	10	9.6	10	76	13	78	83	14	0	3	0.77
12650803--12650902	17	6.4	14	73	21	76	83	14	0	3	0.77
12650809--12650902	19	5.3	17	81	9	91	81	14	0	3	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12651066--12651199	22	6.6	20	69	21	75	25	0	4	69	1.12
12652242--12652308	31	2.2	31	81	7	75	13	10	1	74	1.14
12652308--12652482	57	2.9	57	81	13	183	45	9	13	32	1.76
12653457--12654022	281	2.0	281	97	0	1078	35	15	13	35	1.86
12657534--12657561	2	14.0	2	100	0	56	50	0	0	50	1.00
12658039--12658063	13	1.9	13	100	0	50	24	28	0	48	1.52
12658479--12658682	95	2.1	95	83	3	259	29	23	21	25	1.99
12662647--12662705	30	2.0	30	100	0	118	23	33	6	35	1.82
12669281--12669313	18	1.9	17	88	11	50	45	6	15	33	1.70
12670630--12670671	19	2.2	20	87	8	61	11	9	2	76	1.12
12672523--12672737	22	9.8	22	80	5	159	38	7	8	44	1.65
12672519--12672693	66	2.7	66	80	4	201	39	6	8	45	1.60
12672523--12672756	66	3.6	63	76	7	184	38	8	8	45	1.64
12672833--12672883	21	2.4	22	83	12	70	37	11	5	45	1.65
12673121--12673202	22	3.8	21	81	3	74	34	15	7	42	1.75
12673134--12673202	22	3.2	21	84	12	86	34	13	8	43	1.74
12673121--12673202	43	1.9	43	82	5	103	34	15	7	42	1.75
12673141--12673246	22	4.9	22	79	5	99	38	9	7	44	1.65
12673689--12673770	22	3.8	21	78	3	65	32	15	8	42	1.78
12672705--12673822	568	2.0	565	98	0	2148	36	11	7	44	1.68
12673775--12673837	11	5.8	11	73	3	56	41	3	4	50	1.39
12673745--12673873	43	3.0	41	82	7	125	39	5	7	47	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12673709--12673880	22	7.9	22	75	10	115	37	6	8	46	1.62
12673754--12673892	22	6.4	22	79	5	131	41	5	6	46	1.53
12673893--12673955	22	2.9	22	88	4	83	39	9	3	47	1.52
12673894--12673963	22	3.2	22	83	4	79	38	8	2	50	1.48
12673944--12674035	44	2.1	44	85	0	121	35	10	8	44	1.70
12673971--12674035	22	3.0	22	68	8	60	35	7	10	46	1.68
12674196--12674564	22	16.8	22	70	13	127	35	8	6	49	1.60
12674873--12675209	22	15.8	22	71	14	136	34	8	5	51	1.57
12674873--12674977	43	2.4	43	84	7	133	37	9	5	47	1.60
12677535--12677583	16	3.1	17	72	19	52	34	0	4	61	1.15
12678668--12678958	150	1.9	153	84	6	387	44	6	8	40	1.62
12685090--12685133	22	2.0	23	81	4	54	34	4	6	54	1.47
12690029--12690334	60	5.2	59	82	4	348	34	11	7	46	1.69
12690028--12690339	119	2.6	120	85	3	398	35	11	8	45	1.69
12691422--12691468	3	15.3	3	95	4	85	34	0	0	65	0.93
12695971--12696026	3	19.0	3	89	10	89	64	0	0	35	0.94
12696544--12696648	34	3.1	34	69	13	90	36	12	14	37	1.84
12702198--12702256	30	2.0	30	100	0	118	35	6	33	23	1.82
12703400--12703426	3	9.0	3	100	0	54	0	33	0	66	0.92
12704770--12704912	74	1.9	75	82	5	182	22	21	16	39	1.92
12706224--12706427	95	2.1	95	85	1	275	26	21	22	29	1.99
12706843--12706867	13	1.9	13	100	0	50	48	0	28	24	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12707341--12707374	2	17.0	2	100	0	68	50	0	0	50	1.00
12709516--12709561	24	1.9	24	86	0	65	67	0	2	30	1.03
12711646--12711676	16	1.9	16	93	0	53	22	6	0	70	1.09
12712830--12712873	21	2.1	21	83	8	54	63	13	11	11	1.52
12713610--12713668	13	4.4	13	77	12	57	23	1	3	71	1.11
12713733--12714149	60	6.8	59	80	8	440	49	6	11	32	1.65
12713867--12714112	131	1.9	130	84	4	334	48	6	12	32	1.67
12717262--12717328	24	2.8	23	78	14	66	70	0	23	5	1.09
12717278--12717329	23	2.3	23	80	6	61	73	0	21	5	1.04
12717313--12717367	25	2.2	25	78	12	60	72	1	20	5	1.13
12718482--12718565	21	3.8	21	80	11	105	38	8	16	36	1.79
12718477--12718573	46	2.1	46	92	0	158	36	9	14	40	1.78
12718503--12718573	21	3.0	25	78	16	96	36	11	15	36	1.83
12718627--12718754	65	2.0	64	92	1	211	35	10	15	37	1.83
12718648--12718768	20	5.7	21	73	12	95	35	9	17	38	1.81
12718653--12718871	79	2.7	80	83	7	264	36	10	17	36	1.84
12718798--12718847	21	2.5	20	90	3	73	40	12	12	36	1.79
12719355--12719473	45	2.6	47	85	6	163	21	15	20	43	1.87
12719446--12719488	15	2.8	15	92	3	68	18	11	30	39	1.86
12719402--12719528	60	2.1	59	88	2	182	20	17	22	39	1.92
12719497--12719617	41	3.0	39	81	7	143	23	17	19	40	1.91
12719507--12719647	41	3.5	39	78	7	138	20	17	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12719497--12719648	82	1.9	82	88	0	232	22	17	21	39	1.92
12719843--12719896	10	4.9	11	73	22	51	20	7	0	72	1.08
12719844--12719892	25	2.1	22	85	11	62	18	8	0	73	1.07
12719853--12719905	20	2.7	20	74	11	54	20	5	0	73	1.03
12721787--12721971	60	3.0	60	83	10	223	53	5	10	30	1.58
12724688--12724715	14	2.0	14	100	0	56	21	0	14	64	1.29
12730123--12730275	76	2.0	76	97	0	288	42	18	11	27	1.84
12751889--12751922	9	3.6	9	85	14	50	35	0	0	64	0.94
12751768--12752175	199	2.0	201	91	3	671	35	6	4	52	1.49
12752004--12752332	163	2.0	167	84	5	436	35	5	6	53	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91