genome.fa.s201.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  89  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15142386--15142609	85	2.6	86	77	10	230	45	18	12	23	1.83
15142870--15143140	113	2.4	114	88	1	384	35	13	14	36	1.85
15142870--15143140	114	2.4	113	88	3	375	35	13	14	36	1.85
15143200--15143450	79	3.2	79	88	3	364	32	16	13	37	1.88
15143339--15143392	20	2.6	21	82	2	65	38	12	11	37	1.79
15143281--15143570	137	2.1	137	85	1	375	33	15	13	37	1.87
15143358--15143504	58	2.5	58	85	1	195	35	17	10	36	1.84
15143318--15143557	79	3.0	78	78	10	179	34	16	12	36	1.86
15143417--15143593	79	2.2	82	85	5	243	33	15	11	38	1.84
15143552--15143776	46	4.9	46	83	5	278	35	14	10	40	1.80
15143580--15143752	21	7.7	21	76	14	139	36	13	10	39	1.80
15143552--15143776	92	2.5	92	86	3	319	35	14	10	40	1.80
15143745--15143790	24	1.9	24	100	0	92	36	10	8	43	1.71
15143576--15143824	70	3.6	70	77	11	226	36	13	10	40	1.79
15143798--15143870	36	2.0	36	91	0	119	32	10	12	43	1.77
15144960--15145057	49	2.0	49	100	0	196	12	16	4	67	1.37
15145040--15145101	20	3.0	20	84	13	74	9	16	0	74	1.07
15149068--15149213	55	2.6	55	87	6	197	34	11	6	46	1.67
15149072--15149302	64	3.9	56	77	14	198	35	9	5	49	1.58
15150035--15150080	20	2.3	19	82	10	56	2	13	10	73	1.17
15150422--15150446	5	5.0	5	100	0	50	20	0	0	80	0.72
15153004--15153067	28	2.2	31	83	8	80	57	12	6	23	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15154564--15154604	15	2.7	16	85	7	50	75	2	0	21	0.92
15154630--15154681	25	2.0	26	82	10	63	44	1	13	40	1.55
15154407--15154770	199	1.8	198	79	14	428	46	6	9	37	1.63
15167206--15167273	29	2.4	29	78	11	70	61	0	1	36	1.05
15167233--15167297	22	3.0	21	78	13	60	58	0	0	41	0.98
15168029--15168069	18	2.2	19	86	4	57	26	0	2	70	0.99
15168698--15168747	21	2.3	20	80	13	55	64	0	4	32	1.12
15168706--15168762	25	2.5	23	83	11	64	64	0	1	33	1.04
15168893--15168925	16	2.0	17	94	5	59	54	0	6	39	1.25
15181888--15181930	22	2.0	22	90	0	68	48	30	13	6	1.69
15184635--15184666	1	32.0	1	100	0	64	0	0	0	100	0.00
15193238--15193313	34	2.3	34	83	2	91	50	3	6	39	1.47
15194733--15194765	2	16.5	2	100	0	66	51	0	0	48	1.00
15195850--15195887	14	2.7	14	91	0	58	55	5	0	39	1.23
15196396--15196467	34	2.1	34	92	0	117	47	4	8	40	1.53
15199010--15199045	14	2.6	14	95	0	63	52	2	0	44	1.15
15199012--15199083	38	1.9	37	85	2	99	51	1	4	43	1.29
15199212--15199241	2	15.0	2	100	0	60	50	0	0	50	1.00
15203162--15203201	12	3.4	12	83	16	57	52	2	0	45	1.14
15205951--15205997	12	3.8	12	78	13	51	44	0	4	51	1.21
15205960--15205999	11	3.5	11	80	12	53	45	0	2	52	1.14
15209638--15209709	38	1.9	37	85	2	99	43	4	1	51	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15209676--15209711	14	2.6	14	95	0	63	44	0	2	52	1.15
15212251--15212326	34	2.3	34	90	2	118	39	7	3	48	1.51
15212836--15212873	14	2.7	14	95	0	67	39	0	2	57	1.12
15212798--15212870	38	1.9	37	83	8	94	39	4	2	53	1.34
15213967--15214008	2	21.0	2	100	0	84	50	0	0	50	1.00
15215429--15215504	34	2.3	34	86	2	100	40	6	2	50	1.42
15223954--15224003	22	2.2	23	82	10	59	68	12	20	0	1.21
15226318--15226359	11	3.8	11	83	0	57	21	0	28	50	1.49
15226317--15226359	22	2.0	22	90	0	68	23	0	27	48	1.51
15226416--15226540	52	2.4	52	89	2	180	38	8	24	28	1.84
15236662--15236716	29	1.9	28	88	3	83	18	3	1	76	1.02
15236857--15236892	13	2.8	13	86	0	54	16	5	0	77	0.94
15236929--15237005	28	2.7	29	74	16	72	62	5	0	32	1.17
15237667--15237734	32	2.1	32	86	10	95	7	13	11	67	1.41
15243324--15243399	34	2.3	34	90	6	120	39	9	2	48	1.49
15243815--15244035	109	2.0	108	87	2	318	37	16	9	36	1.82
15244025--15244055	15	2.1	15	100	0	62	32	25	6	35	1.82
15244052--15244077	13	2.0	13	100	0	52	38	7	7	46	1.61
15244323--15244365	22	1.9	22	85	4	59	13	13	2	69	1.28
15246329--15246439	22	5.0	22	72	12	84	50	2	9	37	1.48
15246323--15246489	66	2.5	65	79	11	171	49	4	9	36	1.55
15246463--15246513	22	2.3	22	74	12	59	49	13	1	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15246647--15246820	22	8.2	22	68	14	78	44	7	8	39	1.62
15246651--15246726	37	2.1	37	85	5	100	38	7	10	43	1.68
15247077--15247178	22	4.6	22	80	2	98	50	4	8	36	1.55
15247092--15247572	22	21.9	22	70	7	107	48	5	9	36	1.60
15247138--15247580	44	10.0	44	71	6	207	48	5	9	36	1.58
15247411--15247572	66	2.5	66	77	2	173	49	7	8	35	1.60
15247595--15247688	11	8.7	11	72	6	59	52	3	5	39	1.40
15247578--15247790	22	9.6	22	71	9	110	48	5	6	39	1.50
15247629--15247714	44	2.0	44	86	9	122	47	4	6	40	1.51
15248071--15248113	22	2.0	22	85	0	59	58	11	2	27	1.46
15248171--15248246	21	3.6	21	84	7	75	48	9	7	34	1.64
15248182--15248246	21	3.1	21	86	6	80	49	9	6	35	1.60
15248879--15249033	52	3.0	51	84	5	177	43	8	21	26	1.81
15249901--15250057	52	3.0	52	80	3	138	44	8	20	26	1.79
15250595--15250679	24	3.5	24	83	3	125	36	11	35	16	1.85
15250982--15251133	51	2.9	52	82	3	173	43	10	21	25	1.84
15254408--15254434	12	2.2	12	100	0	54	59	0	0	40	0.98
15254432--15254495	29	2.2	29	88	0	92	46	1	1	50	1.20
15254586--15254672	40	2.1	44	85	8	119	58	1	0	40	1.05
15255214--15255257	20	2.2	20	84	11	56	50	15	0	34	1.45
15255541--15255606	29	2.3	29	82	7	82	57	0	1	40	1.08
15255791--15255857	23	2.8	24	84	4	73	16	47	2	32	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15257230--15257262	9	3.8	9	92	8	59	66	0	0	33	0.92
15261045--15261077	16	2.0	17	94	5	59	72	0	0	27	0.85
15266956--15266998	22	2.0	22	90	0	68	48	30	13	6	1.69
15267841--15267944	52	2.0	52	96	0	190	32	11	25	29	1.91
15273366--15273408	22	2.0	22	85	0	59	58	0	4	37	1.19
15273650--15273684	18	1.9	18	88	0	52	62	0	2	34	1.10
15274719--15274946	116	2.0	115	92	2	386	36	17	14	31	1.89
15280641--15280699	28	2.1	29	81	9	68	45	0	1	52	1.10
15280814--15280870	29	2.0	29	96	0	105	54	1	0	43	1.10
15284156--15284312	52	3.0	52	86	3	201	24	27	8	39	1.85
15284605--15284701	24	4.0	24	77	9	97	18	36	9	36	1.83
15285237--15285393	52	3.0	53	85	5	196	27	22	7	42	1.80
15285692--15285781	24	3.7	24	75	8	92	18	34	10	36	1.85
15286289--15286443	52	3.0	52	88	1	222	26	24	8	40	1.83
15287080--15287140	21	2.9	21	87	4	79	37	6	9	45	1.63
15287095--15287150	21	2.7	21	86	2	69	39	7	10	42	1.67
15287097--15287150	20	2.7	21	82	5	67	38	7	11	42	1.68
15287214--15287269	22	2.6	22	80	2	60	30	5	12	51	1.61
15287610--15287684	22	3.4	21	82	12	89	41	8	5	45	1.56
15287610--15287695	44	2.0	44	86	9	122	39	8	5	46	1.58
15287705--15287776	30	2.4	29	84	6	83	41	6	2	48	1.44
15287752--15287915	44	3.7	43	76	4	130	34	8	6	50	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15287818--15288186	22	16.8	22	67	8	106	36	8	4	49	1.56
15287752--15287911	66	2.4	66	75	2	169	35	8	6	49	1.61
15288155--15288190	11	3.3	11	84	0	54	36	5	5	52	1.48
15288146--15288247	22	4.6	22	80	2	98	36	8	4	50	1.55
15288521--15288596	22	3.5	22	74	3	64	38	3	6	51	1.47
15288558--15288599	22	1.9	22	95	0	75	42	9	2	45	1.49
15288560--15288607	22	2.2	22	85	7	62	41	12	2	43	1.54
15288812--15288871	22	2.7	23	79	7	70	35	6	10	48	1.63
15288835--15289001	66	2.5	65	80	10	180	36	8	4	50	1.53
15288901--15289001	22	4.6	21	74	15	80	35	7	1	54	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91