genome.fa.s201.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  57  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9467885--9467950	6	11.7	6	78	18	79	83	0	0	16	0.65
9467886--9467950	11	5.8	11	80	20	73	83	0	0	16	0.66
9468800--9468858	22	2.7	23	86	7	86	57	0	6	35	1.25
9468792--9468903	17	6.2	17	72	15	75	66	1	3	27	1.18
9470263--9470312	8	6.6	8	84	13	54	18	0	2	80	0.82
9471183--9471242	23	2.6	23	72	0	57	6	8	8	76	1.15
9471735--9471776	17	2.5	17	85	14	52	9	14	0	76	1.02
9471717--9471763	24	1.9	25	86	4	69	10	14	0	74	1.07
9472286--9472314	9	3.3	9	95	4	51	10	10	0	79	0.94
9472953--9473026	16	4.8	15	80	9	69	2	5	9	82	0.92
9472961--9473018	20	3.0	20	78	12	66	1	6	10	81	0.95
9473377--9473440	25	2.6	24	82	7	74	9	21	1	67	1.28
9473385--9473456	25	2.9	25	83	4	74	8	20	1	69	1.22
9474039--9474084	18	2.7	17	83	9	58	6	6	6	80	1.02
9474488--9474550	25	2.5	24	72	20	58	61	1	1	34	1.15
9476127--9476178	16	3.2	16	81	5	68	53	5	11	28	1.60
9477425--9477551	52	2.4	52	82	7	150	30	25	7	37	1.83
9477454--9477581	52	2.5	52	80	2	141	29	23	6	40	1.79
9479184--9479280	49	2.0	49	93	0	167	43	10	7	39	1.66
9484279--9484309	16	1.9	16	100	0	62	0	9	0	90	0.46
9486026--9486090	11	5.9	11	75	22	57	67	1	9	21	1.27
9486030--9486082	21	2.6	21	83	16	60	66	1	11	20	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9487156--9487182	2	13.5	2	100	0	54	48	0	0	51	1.00
9489581--9489621	3	13.3	3	94	5	73	0	31	2	65	1.05
9492574--9492619	20	2.3	21	85	11	69	67	4	0	28	1.10
9497135--9497172	2	19.0	2	100	0	76	50	0	0	50	1.00
9497740--9497788	2	24.5	2	91	0	71	53	2	0	44	1.12
9498770--9498813	21	2.2	19	84	8	52	50	0	4	45	1.22
9500650--9500979	173	1.9	172	90	4	531	33	13	8	44	1.75
9500650--9500985	59	5.8	58	90	4	529	33	13	9	44	1.75
9500650--9500988	116	2.9	114	94	3	590	33	12	9	44	1.75
9501007--9501116	11	9.6	11	71	24	54	80	4	0	14	0.93
9501064--9501123	1	60.0	1	86	0	84	93	1	0	5	0.41
9501060--9501123	12	4.9	13	92	7	96	92	1	0	6	0.45
9501064--9501123	18	3.1	19	92	7	95	93	1	0	5	0.41
9501533--9501591	30	1.9	31	86	10	86	27	20	23	28	1.99
9501607--9501657	11	4.5	11	79	11	50	45	17	3	33	1.67
9501610--9501659	24	2.1	23	85	3	64	40	18	4	38	1.69
9501969--9502179	4	52.2	4	67	20	50	66	4	2	26	1.24
9502017--9502060	15	2.8	16	80	19	56	77	2	4	15	1.04
9502022--9502136	55	2.1	55	82	9	137	68	5	1	24	1.19
9502060--9502105	18	2.3	21	85	10	62	63	6	0	30	1.20
9502081--9502184	39	2.7	39	76	10	97	65	7	0	26	1.20
9502365--9502459	1	95.0	1	87	0	136	0	0	6	93	0.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9502366--9502459	22	4.3	22	92	6	156	0	0	6	93	0.34
9502365--9502459	29	3.4	28	92	5	156	0	0	6	93	0.34
9502463--9502897	41	10.7	41	94	4	769	36	23	18	22	1.95
9502463--9502897	81	5.3	83	97	2	775	36	23	18	22	1.95
9507400--9507496	49	2.0	49	93	0	167	43	10	7	39	1.66
9514236--9514313	11	7.3	11	72	25	60	69	1	8	20	1.23
9514240--9514284	21	2.1	21	84	15	58	64	2	13	20	1.38
9514287--9514369	42	2.0	43	80	7	98	69	2	4	22	1.19
9524840--9524886	24	2.0	24	83	8	60	48	21	4	25	1.68
9525526--9525576	19	2.5	20	84	12	61	62	3	0	33	1.13
9528394--9528438	2	22.5	2	86	0	54	55	0	2	42	1.12
9533521--9533716	98	2.0	98	100	0	392	21	20	21	36	1.95
9536988--9537117	22	5.8	22	68	11	75	36	7	8	46	1.63
9537143--9537206	22	2.9	22	81	9	85	35	7	6	50	1.57
9537034--9537269	22	10.8	22	69	9	81	35	8	8	47	1.64
9537495--9537616	22	5.5	22	78	6	86	38	8	11	41	1.71
9537530--9537751	22	10.2	22	74	9	168	37	7	9	45	1.65
9537498--9537700	89	2.3	88	92	1	334	36	8	10	44	1.69
9537821--9538259	22	20.4	22	66	13	142	38	10	3	48	1.54
9538096--9538216	61	2.0	61	80	6	138	38	9	3	48	1.53
9538382--9538438	22	2.6	23	75	8	64	47	8	1	42	1.45
9538456--9538499	20	2.2	20	84	8	54	36	9	9	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9540314--9540378	33	2.1	33	85	8	91	46	3	0	50	1.17
9547071--9547120	26	1.9	26	100	0	100	46	16	6	32	1.71
9548164--9548209	20	2.3	20	85	10	60	56	4	6	32	1.45
9548311--9548348	13	3.0	13	85	14	53	21	0	2	76	0.91
9548403--9548448	23	2.1	22	84	11	60	41	2	2	54	1.25
9548414--9548476	21	3.0	21	81	6	74	44	0	4	50	1.23
9557242--9557304	32	2.0	32	93	0	108	30	14	17	38	1.89
9559846--9559899	29	2.0	28	85	10	76	38	5	14	40	1.70
9576116--9576167	23	2.3	23	93	0	86	28	23	5	42	1.77
9577337--9577378	20	2.0	21	90	9	68	38	9	4	47	1.57
9577403--9577571	91	1.9	91	94	2	304	37	18	9	34	1.84
9579197--9579250	27	2.0	27	82	7	65	50	1	7	40	1.41
9579158--9579679	272	1.9	272	79	5	581	38	11	14	36	1.82
9580140--9580198	29	2.0	29	86	0	82	54	1	0	44	1.10
9580140--9580213	29	2.6	27	77	12	69	51	1	0	47	1.09
9580297--9580356	29	2.1	29	83	0	75	48	3	0	48	1.18
9580906--9580939	16	2.2	16	89	5	52	26	0	2	70	1.01
9580925--9581039	21	5.4	21	76	5	88	33	5	11	50	1.60
9580990--9581039	22	2.3	22	82	6	57	34	6	12	48	1.65
9581539--9581579	21	2.0	21	85	9	57	63	4	4	26	1.35
9581757--9581826	35	2.0	35	97	0	131	54	4	8	32	1.50
9582135--9582181	22	2.1	22	96	0	85	40	6	4	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9582143--9582195	22	2.4	22	90	0	79	43	7	1	47	1.42
9582225--9582296	22	3.3	21	75	11	56	37	5	8	48	1.57
9582213--9582331	44	2.7	44	78	11	109	40	7	6	45	1.59
9582345--9582853	22	23.2	22	71	9	144	39	9	4	47	1.54
9582343--9582471	66	2.0	66	83	6	163	40	12	1	45	1.51
9582586--9582619	15	2.4	14	85	5	50	44	5	0	50	1.26
9582561--9582822	44	6.0	44	74	10	196	39	6	4	49	1.49
9582682--9582822	11	12.7	11	64	10	54	39	6	3	50	1.45
9582710--9582747	20	1.9	19	89	5	58	42	5	0	52	1.24
9583166--9583234	22	3.1	21	73	8	57	36	4	10	49	1.57
9583353--9583445	22	4.2	22	74	0	87	36	11	6	45	1.67
9583535--9583678	22	6.7	22	71	17	97	36	9	5	47	1.60
9583563--9583628	20	3.2	20	78	17	73	40	4	4	50	1.43
9583544--9583655	42	2.6	44	82	10	133	39	7	5	48	1.54
9583690--9583761	22	3.3	22	80	16	78	31	12	4	51	1.59
9583764--9583804	22	1.9	22	90	5	66	46	2	2	48	1.28
9586359--9586404	17	2.7	17	79	0	56	43	2	0	54	1.12
9586649--9586702	21	2.7	21	94	5	94	27	5	7	59	1.47
9589843--9589909	23	2.9	22	76	22	66	40	0	1	58	1.07
9589854--9589909	24	2.4	24	80	19	66	39	0	1	58	1.08
9589844--9589905	24	2.9	21	72	25	58	40	0	1	58	1.08
9589913--9589948	12	2.9	12	88	8	54	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9589911--9589945	13	2.7	13	90	0	52	62	0	0	37	0.95
9594756--9594804	26	2.0	24	92	8	80	30	6	32	30	1.82
9595325--9595393	34	2.0	34	97	0	129	55	11	15	17	1.70
9599754--9599812	30	2.0	30	83	6	75	47	3	3	45	1.36
9599869--9599910	22	2.0	21	85	4	57	45	2	7	45	1.44
9600598--9600641	2	22.0	2	100	0	88	50	0	50	0	1.00
9604883--9604921	13	3.0	13	80	0	51	41	0	0	58	0.98
9604958--9604997	19	2.1	19	85	0	53	65	2	0	32	1.06
9605056--9605091	13	2.8	13	82	0	54	44	2	0	52	1.15
9608600--9608658	29	2.0	29	93	0	100	55	6	16	20	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91