genome.fa.s201.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  84  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14137142--14137342	103	2.0	100	88	6	298	23	18	21	35	1.95
14137257--14137397	41	3.4	40	88	5	185	23	18	22	35	1.96
14137611--14137663	6	8.5	6	77	22	56	18	1	0	79	0.83
14137610--14137700	39	2.4	39	81	5	96	23	2	1	73	1.01
14137628--14137703	33	2.4	31	77	16	66	23	2	1	72	1.05
14137610--14137710	24	4.0	25	73	15	82	22	1	0	74	0.98
14137789--14137832	21	2.0	22	91	4	72	22	4	4	68	1.27
14138067--14138091	10	2.5	10	100	0	50	16	0	24	60	1.36
14138612--14138781	12	15.0	11	69	19	59	19	2	4	73	1.12
14138612--14138662	4	12.8	4	78	15	52	19	0	5	74	1.02
14138686--14138782	5	18.8	5	74	23	69	16	4	1	78	0.96
14138685--14138782	6	16.7	6	71	23	75	16	4	1	78	0.96
14138680--14138787	9	11.2	9	72	16	51	16	5	0	76	1.02
14138778--14139377	59	10.1	58	82	7	660	46	7	11	34	1.68
14138778--14139377	178	3.4	175	87	5	791	46	7	11	34	1.68
14152083--14152127	22	2.0	22	86	0	63	48	6	2	42	1.41
14152843--14152881	18	2.1	19	85	4	53	56	2	2	38	1.27
14153994--14154025	16	1.9	17	93	6	57	34	6	0	59	1.23
14155089--14155153	27	2.4	27	75	12	71	49	3	1	46	1.27
14156493--14156526	11	3.0	11	83	8	50	47	0	2	50	1.16
14156290--14156963	230	2.9	228	88	4	914	47	8	5	38	1.58
14161397--14161423	5	5.4	5	100	0	54	22	0	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14165769--14165812	12	3.5	12	81	6	52	54	2	4	38	1.33
14167001--14167025	2	12.5	2	100	0	50	48	0	0	52	1.00
14168445--14168721	131	2.1	131	81	8	307	42	9	6	41	1.64
14169218--14169271	16	3.3	16	79	7	56	57	11	0	31	1.34
14170624--14170680	21	2.8	21	78	7	64	49	0	0	50	1.00
14170671--14170719	23	2.2	22	85	10	64	34	2	0	63	1.06
14172115--14172144	2	15.5	2	93	6	53	50	0	0	50	1.00
14175727--14175764	19	2.2	17	86	13	51	57	13	0	28	1.36
14188118--14188154	18	2.0	19	89	5	58	29	8	16	45	1.76
14188411--14188448	14	2.8	14	84	4	51	63	2	2	31	1.22
14189842--14189887	14	2.9	16	81	18	60	50	2	0	47	1.13
14190470--14190516	16	2.9	16	83	0	58	29	4	6	59	1.41
14190606--14190654	16	3.0	16	84	3	62	44	6	0	48	1.27
14192693--14192720	2	14.0	2	100	0	56	50	0	0	50	1.00
14193762--14193824	27	2.3	27	77	0	63	46	3	11	39	1.55
14198938--14198980	18	2.2	20	88	8	63	44	0	0	55	0.99
14199405--14199450	21	2.2	21	81	14	51	56	6	0	36	1.25
14201214--14201241	14	2.0	14	100	0	56	35	28	14	21	1.92
14201886--14201911	12	2.2	12	100	0	52	34	0	30	34	1.58
14205132--14205197	33	2.0	33	96	0	123	48	18	16	16	1.82
14207668--14207708	18	2.3	19	79	12	50	60	4	9	24	1.47
14207960--14208012	25	2.2	25	86	6	74	47	0	1	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14209909--14209977	18	3.8	18	69	21	54	53	0	0	46	1.00
14215140--14215241	6	17.0	6	75	4	71	58	7	1	31	1.37
14215140--14215205	30	2.2	30	83	5	80	62	6	1	30	1.29
14216340--14216380	18	2.2	20	86	8	59	60	7	2	29	1.36
14216800--14216867	30	2.2	30	80	10	75	42	0	5	51	1.26
14216801--14216869	31	2.2	31	79	5	77	43	0	5	50	1.26
14220987--14221049	31	2.0	32	84	9	85	39	3	4	52	1.38
14232079--14232112	11	2.9	12	82	8	52	35	0	0	64	0.94
14232079--14232123	23	2.0	23	86	8	65	35	0	2	62	1.08
14235618--14235659	8	5.1	8	78	16	50	69	0	2	28	1.01
14236436--14236465	10	3.1	10	90	9	53	60	0	0	40	0.97
14236432--14236477	19	2.4	19	76	20	51	58	6	0	34	1.24
14237153--14237205	25	2.2	23	83	12	63	30	3	9	56	1.49
14237784--14237996	61	3.6	58	83	10	252	49	4	11	34	1.60
14237998--14238614	310	2.0	312	85	5	848	35	10	13	39	1.79
14239107--14239159	13	4.1	14	75	20	53	50	3	0	45	1.19
14239114--14239161	25	2.0	25	91	4	80	52	2	0	45	1.12
14240068--14240100	3	11.0	3	93	0	57	30	0	3	66	1.06
14240522--14240604	11	6.8	12	76	14	57	77	2	2	18	0.99
14240549--14240583	14	2.6	14	90	4	54	71	2	0	25	1.00
14240550--14240605	13	4.4	12	80	11	51	76	1	3	17	1.01
14240550--14240609	14	4.6	13	73	12	52	75	1	3	20	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14242854--14242879	13	2.0	13	100	0	52	46	7	0	46	1.31
14243281--14243317	19	1.9	19	88	0	56	35	13	5	45	1.66
14243727--14243763	3	12.3	3	94	0	65	67	2	0	29	1.04
14244886--14244931	21	2.1	22	92	4	76	43	2	19	34	1.63
14246041--14246072	16	2.0	16	93	0	55	34	6	9	50	1.60
14252879--14252921	22	1.9	23	85	4	61	20	13	2	62	1.42
14255485--14255515	2	16.0	2	93	6	55	48	0	0	51	1.00
14264562--14264603	6	7.0	6	86	7	50	40	0	9	50	1.35
14264573--14264607	18	2.0	17	88	5	52	42	0	8	48	1.33
14269988--14270053	31	2.2	31	86	2	89	34	12	6	46	1.66
14272033--14272067	18	2.0	17	88	5	52	45	0	0	54	0.99
14273516--14273555	13	3.1	13	85	0	53	45	5	0	50	1.23
14276692--14276760	29	2.3	29	78	9	68	50	1	1	46	1.19
14277698--14277749	12	4.2	12	81	18	54	32	0	0	67	0.91
14277712--14277764	15	3.5	14	80	14	52	32	0	0	67	0.91
14289754--14290081	144	2.3	144	86	3	448	34	14	12	38	1.84
14289754--14290147	144	2.7	144	82	6	419	33	14	12	39	1.84
14301424--14301451	13	2.2	13	100	0	56	57	7	7	28	1.52
14307698--14307748	21	2.5	21	93	6	88	49	0	0	50	1.00
14308041--14308094	21	2.7	21	88	5	76	51	0	0	48	1.00
14308038--14308094	19	2.9	19	82	12	71	50	0	0	49	1.00
14308086--14308117	17	1.9	17	93	6	57	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14308215--14308248	15	2.2	15	89	5	50	58	2	5	32	1.37
14309214--14309289	29	2.6	29	86	10	102	35	1	1	61	1.12
14309310--14309384	30	2.5	29	80	6	96	50	4	2	42	1.35
14310662--14310708	15	3.1	16	77	22	57	46	2	0	51	1.13
14312018--14312060	12	3.5	12	80	3	50	53	0	6	39	1.28
14316599--14316650	26	1.9	26	84	7	68	61	1	1	34	1.18
14318275--14318299	13	1.9	13	100	0	50	48	16	16	20	1.82
14322730--14322755	13	2.0	13	100	0	52	46	7	15	30	1.74
14326704--14326735	15	2.1	15	100	0	64	18	25	6	50	1.70
14327923--14327952	6	5.2	6	92	8	53	16	0	0	83	0.65
14334948--14334982	18	1.9	18	88	11	54	37	0	0	62	0.95
14334807--14335108	166	1.8	168	83	7	409	41	4	5	48	1.46
14335292--14335353	15	3.9	16	81	10	65	41	1	1	54	1.19
14335550--14335583	17	1.9	17	88	5	50	50	0	0	50	1.00
14340348--14340395	21	2.3	21	78	7	53	54	2	4	39	1.32
14340458--14340557	19	4.9	18	70	20	56	55	9	2	34	1.43
14340509--14340558	9	5.3	9	76	9	55	56	6	2	36	1.36
14340510--14340558	19	2.6	19	90	0	80	55	6	2	36	1.37
14342369--14342737	64	5.8	62	70	13	191	37	13	9	39	1.76
14342361--14342723	126	2.9	127	77	13	347	38	12	9	39	1.76
14342361--14342783	126	3.4	126	78	9	341	38	12	10	39	1.77
14342846--14343239	124	3.2	121	76	8	379	35	10	11	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14342913--14343079	64	2.7	61	78	13	171	35	7	12	43	1.72
14342900--14343104	60	3.3	60	78	9	198	37	10	12	40	1.78
14354446--14354761	105	3.0	105	98	0	605	23	31	13	31	1.93
14356308--14356373	29	2.3	28	79	7	78	62	0	1	36	1.05
14361834--14361873	18	2.3	18	95	4	73	15	5	5	75	1.15
14365371--14365428	25	2.3	25	78	16	66	70	3	15	10	1.28
14371680--14371704	5	5.0	5	100	0	50	0	0	20	80	0.72
14372129--14372153	11	2.3	11	100	0	50	0	0	24	76	0.80
14374538--14374564	14	1.9	14	100	0	54	81	0	3	14	0.82
14375446--14375476	15	2.1	15	93	0	53	29	9	6	54	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91