genome.fa.s201.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  4  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360059--360127	24	2.8	24	91	6	104	18	34	7	39	1.79
360710--360863	52	3.0	51	83	7	177	27	23	7	42	1.80
360885--360916	11	2.9	11	95	0	55	50	25	0	25	1.50
363831--363868	10	3.8	10	89	0	58	36	42	13	7	1.73
364034--364059	2	13.0	2	100	0	52	50	0	0	50	1.00
365643--366595	371	2.6	370	93	1	1588	18	33	23	24	1.96
367434--367467	2	17.0	2	93	0	59	50	2	0	47	1.16
368160--368189	1	30.0	1	93	0	51	0	0	3	96	0.21
375322--375357	17	2.1	18	89	5	56	27	11	11	50	1.72
379776--379823	23	2.1	23	100	0	96	22	12	25	39	1.89
380104--380128	2	12.5	2	100	0	50	48	0	0	52	1.00
387242--387389	48	3.0	48	83	3	179	13	14	22	48	1.79
387394--387418	8	3.1	8	100	0	50	36	0	64	0	0.94
394521--394588	30	2.3	30	82	2	84	42	0	1	55	1.08
396757--396932	88	2.0	88	92	0	289	37	17	14	30	1.90
397840--397896	28	2.0	29	89	3	89	29	19	12	38	1.88
398581--398607	3	9.0	3	100	0	54	66	0	0	33	0.92
403317--403349	2	16.5	2	93	0	57	48	0	3	48	1.17
420751--420802	26	2.0	26	100	0	104	19	15	7	57	1.62
434941--434991	26	2.0	25	92	3	84	25	3	17	52	1.61
438367--438404	7	5.4	7	93	0	67	39	2	13	44	1.57
438849--438904	15	3.7	15	71	4	58	33	1	0	64	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438948--439003	26	2.1	27	83	3	69	57	8	3	30	1.47
438996--439034	14	2.7	14	84	4	51	58	5	2	33	1.33
438996--439038	15	2.9	15	79	6	52	60	4	2	32	1.30
439133--439192	22	2.8	22	74	20	65	63	0	1	35	1.05
440961--441090	30	4.4	30	77	6	131	50	3	2	43	1.30
440954--441090	60	2.3	59	81	3	150	52	2	2	42	1.28
441641--441675	7	5.0	7	100	0	70	28	57	14	0	1.38
444005--444154	74	2.0	74	83	2	185	44	6	19	30	1.74
446717--446770	2	27.0	2	100	0	108	0	50	0	50	1.00
451423--451471	25	2.0	25	87	0	71	30	10	26	32	1.89
457672--457708	16	2.3	16	95	0	65	40	0	16	43	1.48
464056--464089	2	17.0	2	93	0	59	50	2	0	47	1.16
473566--473623	17	3.5	17	71	20	52	48	1	1	48	1.22
481778--482351	58	9.7	59	78	11	550	37	13	6	42	1.70
482117--482211	31	3.2	30	66	22	83	35	12	9	42	1.76
481779--482365	121	5.0	115	79	12	464	37	13	6	43	1.69
482363--482404	15	2.9	15	79	10	52	78	0	7	14	0.95
483374--483432	24	2.5	24	77	8	66	32	20	33	13	1.91
484142--484184	20	2.2	20	83	8	52	72	2	4	20	1.14
484351--484385	13	2.6	14	86	4	54	5	8	8	77	1.13
484506--484916	41	10.0	41	89	2	565	36	21	17	24	1.95
486534--486588	11	4.7	11	75	20	58	3	12	0	83	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486545--486592	23	2.1	23	84	7	62	6	16	0	77	0.97
486536--486608	36	2.0	36	84	5	94	8	13	2	75	1.14
490397--490984	58	10.1	59	76	9	512	37	12	6	42	1.70
492740--492803	19	3.3	19	76	16	69	71	3	3	21	1.13
502326--502359	16	2.1	16	100	0	68	32	17	32	17	1.94
503050--503094	23	2.0	23	90	0	72	26	28	8	35	1.87
506657--509325	236	11.5	233	71	15	916	51	5	10	31	1.61
506614--509442	235	12.2	233	71	12	947	51	6	10	31	1.61
512626--512903	59	4.7	57	82	11	285	44	6	13	34	1.70
512626--512903	120	2.3	116	83	10	314	44	6	13	34	1.70
517464--517506	20	2.2	20	91	4	70	76	2	13	6	1.08
518820--518901	43	1.9	42	92	2	137	39	9	14	36	1.79
519186--519490	42	7.3	41	89	2	457	25	16	21	35	1.95
519186--519488	125	2.4	125	91	2	493	25	16	21	35	1.94
519186--519490	83	3.7	83	89	0	484	25	16	21	35	1.95
519494--519585	1	92.0	1	74	0	76	86	6	3	3	0.75
519494--519585	18	5.2	17	84	6	112	86	6	3	3	0.75
519494--519585	20	4.7	19	82	6	94	86	6	3	3	0.75
519496--519586	19	5.0	19	81	7	93	85	6	3	4	0.81
519558--519811	115	2.2	113	87	4	352	44	12	16	27	1.83
522151--522241	29	3.1	29	62	22	71	40	3	16	39	1.65
522136--522591	59	7.8	58	82	9	482	44	6	12	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522143--522595	176	2.6	173	87	5	610	44	6	13	35	1.70
523670--523717	21	2.3	21	82	7	62	54	4	0	41	1.20
523673--523766	10	9.0	11	73	14	58	57	4	0	38	1.18
539813--539851	20	2.0	20	94	0	69	38	5	25	30	1.78
541049--541089	21	1.9	22	85	5	57	24	7	0	68	1.15
541733--541778	23	2.0	23	95	0	83	67	8	8	15	1.41
542363--542521	21	7.3	21	67	23	64	52	6	5	36	1.49
542541--542584	21	2.1	21	83	8	54	47	4	2	45	1.35
542674--542731	21	2.8	21	84	7	73	48	15	8	27	1.74
547686--547730	18	2.6	18	79	13	58	64	4	6	24	1.37
548282--548430	10	14.8	10	65	20	53	51	10	3	34	1.53
548353--548503	21	7.3	21	72	9	87	50	9	3	35	1.54
548354--548534	41	4.4	41	77	12	138	51	8	5	33	1.56
548351--548534	21	8.9	21	68	14	80	51	9	5	33	1.58
548733--548880	21	7.1	21	73	11	76	48	12	3	35	1.58
548810--548964	21	7.4	20	68	9	71	47	13	7	31	1.71
550294--550410	48	2.4	48	87	2	155	35	10	24	29	1.88
554993--555024	5	6.6	5	92	7	57	81	0	0	18	0.70
554994--555025	9	3.4	9	91	8	55	78	0	0	21	0.76
554993--555024	14	2.2	15	94	5	57	81	0	0	18	0.70
555403--555460	9	6.3	9	82	9	73	84	0	5	10	0.77
555403--555460	17	3.2	18	85	7	73	84	0	5	10	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
556036--556354	46	7.0	45	79	7	268	41	10	13	34	1.79
556117--556193	21	3.5	21	68	13	55	42	9	14	33	1.77
556092--556176	25	3.6	25	68	12	70	48	10	9	31	1.70
556034--556354	92	3.5	91	79	7	321	41	10	13	34	1.79
556226--556532	25	12.9	25	73	13	200	40	9	14	36	1.77
556226--556477	117	2.2	117	86	2	355	39	7	14	38	1.75
556345--556471	46	2.8	45	81	8	166	40	7	14	38	1.73
561015--561049	18	2.0	18	88	5	54	77	2	0	20	0.90
573547--573585	20	2.0	20	89	0	60	25	12	12	48	1.77
576797--576886	21	4.3	20	71	10	56	42	16	8	32	1.79
576842--576898	21	2.8	21	84	7	73	45	14	8	31	1.75
576860--576906	21	2.2	21	88	0	67	48	10	6	34	1.63
577103--577768	21	31.8	20	67	11	151	47	11	8	33	1.69
577129--577241	41	2.7	42	83	2	131	48	11	3	36	1.57
577092--577369	42	6.7	42	73	11	180	48	10	7	33	1.66
577551--577651	11	9.5	11	70	8	57	50	10	5	32	1.62
577553--577725	62	2.8	62	80	11	183	47	12	6	34	1.66
577744--578044	128	2.3	127	78	7	313	46	9	7	36	1.65
578001--578204	21	9.8	21	67	9	87	47	11	6	33	1.67
582132--582199	21	3.2	21	83	10	77	48	17	1	32	1.56
582355--582626	21	13.1	20	68	11	111	47	11	8	32	1.69
582360--582493	62	2.2	62	80	10	150	47	12	5	35	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582396--582620	104	2.2	105	80	9	257	48	9	8	33	1.67
582803--582858	21	2.6	21	82	2	67	51	10	3	33	1.54
582827--582916	21	4.3	20	77	6	81	46	16	3	33	1.64
582848--582958	41	2.7	42	80	8	120	45	13	5	36	1.67
582865--583014	21	7.2	20	72	8	95	44	11	8	35	1.71
583094--583134	21	2.0	21	85	9	57	43	7	12	36	1.70
583233--583379	21	7.1	21	71	10	88	51	13	2	33	1.53
583431--583475	21	2.1	21	84	8	56	48	6	8	35	1.61
587299--587415	21	5.6	21	71	4	74	47	15	7	29	1.73
587352--587433	42	2.0	41	81	11	96	46	15	7	30	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91