genome.fa.s201.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  39  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6639899--6639946	25	1.9	25	91	0	78	43	20	4	31	1.71
6640960--6641022	29	2.1	30	88	2	92	44	3	15	36	1.63
6646010--6646052	18	2.3	18	84	8	50	11	2	44	41	1.53
6648179--6648223	7	6.4	7	80	10	56	2	0	15	82	0.77
6648178--6648223	13	3.4	14	80	11	51	2	0	17	80	0.81
6648178--6648223	14	3.4	13	85	11	65	2	0	17	80	0.81
6648510--6648562	22	2.4	22	90	0	88	33	18	18	28	1.95
6648431--6648634	105	1.9	105	81	2	239	37	18	13	30	1.89
6648864--6648977	40	2.9	39	72	3	111	34	7	19	38	1.81
6650495--6650524	3	10.0	3	100	0	60	33	0	0	66	0.92
6655273--6655303	12	2.7	12	95	5	55	90	0	9	0	0.46
6659247--6659282	16	2.2	16	95	0	63	47	0	5	47	1.25
6660413--6660520	7	16.4	7	79	12	113	14	0	39	45	1.45
6660413--6660520	13	8.2	13	82	5	119	14	0	39	45	1.45
6660440--6660520	6	12.7	6	78	11	81	9	0	43	46	1.37
6660413--6660520	26	4.1	26	87	3	137	14	0	39	45	1.45
6660449--6660527	25	3.1	25	87	1	104	13	0	37	48	1.43
6664812--6664864	3	17.7	3	100	0	106	67	0	0	32	0.91
6671575--6671617	18	2.4	19	85	14	56	55	9	4	30	1.52
6672621--6672659	15	2.6	14	88	8	51	15	0	5	79	0.90
6672725--6672765	3	13.7	3	100	0	82	68	0	0	31	0.90
6674619--6674660	7	5.9	7	83	5	57	2	2	11	83	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6674615--6674666	15	3.5	15	81	2	61	1	5	9	82	0.90
6674759--6674907	35	4.2	36	76	3	108	50	18	18	12	1.78
6675155--6675266	35	3.3	33	70	16	104	26	10	20	41	1.85
6675096--6675427	101	3.3	98	76	9	260	28	15	18	37	1.91
6676538--6676590	19	2.7	19	76	21	56	7	16	0	75	1.02
6677976--6678018	22	2.0	22	91	8	72	2	13	0	83	0.74
6677976--6678018	21	2.1	20	91	4	68	2	13	0	83	0.74
6680315--6680443	62	2.1	63	83	1	161	31	10	24	33	1.90
6683283--6683377	13	6.9	13	68	17	59	18	7	22	51	1.71
6683328--6683377	25	2.0	25	92	0	82	20	4	22	54	1.61
6683488--6683527	17	2.3	18	86	4	55	37	0	0	62	0.95
6683692--6683717	3	8.7	3	100	0	52	69	0	0	30	0.89
6699631--6699656	7	3.7	7	100	0	52	88	0	11	0	0.52
6700047--6700092	23	2.0	23	100	0	92	39	21	8	30	1.84
6706913--6707255	146	2.4	145	80	3	357	40	19	12	27	1.87
6707477--6707532	27	2.0	28	90	10	89	32	32	12	23	1.92
6708914--6709034	31	3.9	31	79	4	118	33	20	12	33	1.90
6708917--6709034	62	1.9	62	82	3	148	33	21	11	33	1.90
6710962--6711278	163	1.9	163	92	0	535	30	11	18	39	1.86
6711578--6711632	20	2.8	19	86	5	65	72	1	9	16	1.18
6712349--6712395	4	11.8	4	84	8	53	21	2	4	72	1.12
6715805--6717147	337	4.0	338	89	3	1960	44	13	18	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6724034--6724148	30	3.9	30	74	13	87	47	2	11	38	1.53
6730049--6730111	19	3.3	19	72	16	58	42	34	1	20	1.62
6730103--6730266	24	6.6	23	67	16	62	43	31	3	21	1.68
6732262--6732839	303	1.9	303	88	1	865	28	11	11	47	1.76
6735071--6735183	55	2.1	54	86	6	158	53	14	2	30	1.54
6735071--6735172	26	3.8	27	78	15	113	54	11	2	30	1.51
6738589--6738686	54	1.9	51	82	13	123	74	6	15	4	1.17
6741693--6742178	200	2.4	202	80	5	545	34	12	10	42	1.77
6742026--6742349	171	1.9	171	84	2	436	32	12	12	42	1.80
6746800--6746825	11	2.4	11	100	0	52	30	0	0	69	0.89
6751417--6751454	14	2.7	14	84	8	51	21	13	0	65	1.26
6753742--6753829	15	6.3	14	69	21	51	21	0	4	73	1.00
6754163--6754228	17	3.8	17	82	9	71	7	3	10	78	1.05
6754196--6754253	25	2.3	25	87	0	89	8	1	12	77	1.06
6754325--6754411	44	2.0	43	84	2	111	39	17	20	22	1.92
6754606--6754921	167	1.9	167	80	6	372	29	12	17	40	1.87
6754997--6755133	32	4.2	33	72	14	106	29	13	18	37	1.89
6756990--6757017	12	2.3	12	100	0	56	0	7	0	92	0.37
6759483--6759517	17	1.9	19	88	11	56	62	17	0	20	1.32
6765281--6765323	18	2.3	18	80	4	50	16	4	2	76	1.05
6767162--6767187	6	4.3	6	100	0	52	50	15	0	34	1.45
6773040--6773074	4	8.8	4	93	0	61	71	2	0	25	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6773170--6773204	10	3.2	11	88	12	54	34	0	0	65	0.93
6773170--6773211	22	1.9	22	85	9	59	35	2	0	61	1.09
6777830--6777854	2	12.5	2	100	0	50	52	0	0	48	1.00
6783601--6783634	3	11.3	3	100	0	68	67	0	0	32	0.91
6784848--6784886	9	4.0	9	81	18	51	12	2	0	84	0.72
6786445--6786488	19	2.4	19	85	11	56	38	4	0	56	1.20
6786583--6786635	22	2.4	23	75	15	58	50	3	0	45	1.19
6786773--6786820	25	2.0	24	83	4	60	52	4	0	43	1.20
6786780--6786836	25	2.3	25	87	6	80	47	3	1	47	1.29
6787112--6787298	94	2.0	94	98	0	365	41	3	10	43	1.57
6792761--6792829	34	2.0	34	91	5	113	33	1	0	65	1.02
6792770--6792823	11	4.7	12	74	21	53	31	0	0	68	0.90
6793550--6793603	22	2.5	22	81	6	56	38	7	16	37	1.77
6793680--6793725	22	2.1	22	87	0	65	17	10	34	36	1.85
6793474--6794313	128	6.5	128	78	4	749	33	11	16	37	1.85
6794185--6794246	22	2.7	24	87	10	101	30	11	27	30	1.91
6793474--6794313	256	3.3	255	78	5	857	33	11	16	37	1.85
6794905--6795091	101	1.9	101	89	0	293	29	16	24	30	1.96
6795158--6795232	39	1.9	39	86	0	105	32	8	21	38	1.82
6796102--6796151	13	3.6	14	78	19	52	6	2	10	82	0.92
6804424--6804468	19	2.5	17	80	16	54	73	4	0	22	1.01
6804930--6804962	10	3.3	10	95	0	57	0	15	0	84	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6809847--6809906	22	2.7	22	94	0	111	31	15	23	30	1.95
6809982--6810249	67	4.1	65	74	15	187	31	19	16	32	1.94
6809948--6810247	34	9.0	34	73	10	142	31	20	16	32	1.94
6820936--6820987	26	2.0	27	88	3	79	3	15	1	78	0.98
6821017--6821080	26	2.5	26	77	7	69	4	15	3	76	1.08
6821377--6821409	11	3.1	11	91	4	50	9	0	3	87	0.63
6824205--6824327	37	3.4	37	80	2	149	36	11	21	30	1.89
6826083--6826197	7	16.1	7	77	10	99	19	0	39	41	1.51
6826065--6826197	21	6.1	21	72	12	99	18	0	38	43	1.50
6826192--6826241	18	2.8	18	81	3	57	16	6	30	48	1.70
6828321--6828367	16	2.7	18	83	12	71	70	0	0	29	0.88
6828321--6828368	7	7.0	7	82	17	57	70	0	0	29	0.87
6830605--6830722	14	8.8	14	72	9	102	53	22	4	20	1.62
6830605--6830722	26	4.4	26	79	9	121	53	22	4	20	1.62
6837784--6837848	18	3.7	18	81	2	78	33	13	13	38	1.85
6837780--6837924	36	4.3	35	76	18	121	34	11	15	39	1.82
6837851--6837942	34	2.8	34	83	9	102	40	11	14	33	1.82
6837877--6837957	16	4.9	16	67	8	54	39	14	16	29	1.88
6837777--6837924	18	8.7	18	69	18	77	35	10	15	38	1.82
6838065--6838118	22	2.4	22	78	3	63	48	9	9	33	1.67
6838326--6838361	14	2.6	14	95	0	63	38	16	8	36	1.79
6838353--6838600	21	11.7	21	68	9	110	41	15	6	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6838395--6838567	62	2.7	63	83	4	222	41	16	5	37	1.71
6838509--6838563	14	4.2	14	80	17	73	40	16	5	38	1.72
6839696--6839792	9	10.3	9	74	11	52	13	20	0	65	1.25
6840630--6840675	17	2.9	16	81	12	51	58	6	21	13	1.57
6843824--6843865	19	2.2	20	86	4	59	28	0	9	61	1.27
6845121--6845164	22	2.0	22	100	0	88	27	22	13	36	1.92
6847032--6847145	55	2.1	55	98	0	219	50	9	5	34	1.57
6847038--6847124	28	3.1	28	63	26	67	51	10	5	32	1.59
6847048--6847134	28	3.1	28	64	26	76	51	11	5	31	1.61
6852937--6853131	93	2.1	94	81	12	222	38	8	14	38	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91