genome.fa.s201.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  61  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10177581--10177618	2	19.0	2	88	0	58	44	0	5	50	1.24
10183055--10183122	20	3.5	20	68	22	54	48	13	8	29	1.72
10185541--10185579	15	2.6	15	87	0	60	74	0	20	5	1.01
10200507--10200583	35	2.2	35	86	6	104	54	0	0	45	0.99
10200513--10200572	31	1.9	31	86	6	86	58	0	0	41	0.98
10204532--10204561	14	2.1	15	93	6	53	20	10	23	46	1.80
10205899--10205926	2	14.0	2	100	0	56	50	0	0	50	1.00
10215128--10215182	25	2.2	26	78	15	62	43	3	5	47	1.44
10215183--10215278	40	2.4	39	85	10	124	47	2	1	48	1.20
10222142--10222176	18	2.0	17	88	5	52	57	2	0	40	1.14
10222574--10222633	31	1.9	31	83	12	79	46	11	0	41	1.40
10227333--10227386	19	2.8	20	83	5	67	64	7	1	25	1.30
10227333--10227372	20	2.1	19	90	4	62	62	2	2	32	1.22
10227346--10227416	37	1.9	37	85	5	99	61	9	1	26	1.35
10227882--10227950	34	2.1	32	84	10	86	53	2	1	42	1.24
10228883--10228958	30	2.5	30	86	0	98	50	1	13	35	1.50
10229044--10229101	29	2.0	29	82	0	71	22	15	8	53	1.69
10229189--10229238	25	1.9	27	88	8	77	40	4	20	36	1.71
10229499--10229525	1	27.0	1	100	0	54	0	0	0	100	0.00
10233558--10233608	24	2.1	24	82	10	59	47	3	1	47	1.32
10233614--10233711	42	2.5	40	78	15	96	45	3	1	50	1.24
10233620--10233699	42	1.9	42	87	5	117	48	1	1	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10233871--10233913	17	2.7	15	83	16	59	51	0	2	46	1.13
10234088--10234146	26	2.4	24	76	15	66	45	1	1	50	1.21
10238237--10238276	3	13.3	3	100	0	80	32	0	0	67	0.91
10239394--10239449	26	2.2	26	84	12	71	75	3	0	21	0.96
10239416--10239462	16	2.8	16	87	9	67	74	2	0	23	0.93
10239418--10239484	18	3.9	16	81	11	62	71	2	4	20	1.17
10239394--10239461	5	13.6	5	71	17	52	75	2	0	22	0.94
10240196--10240228	12	2.6	13	85	9	50	81	0	0	18	0.68
10240250--10240285	3	12.0	3	93	0	63	63	0	2	33	1.08
10240531--10240633	37	2.8	37	72	0	107	48	8	20	22	1.76
10241785--10241842	17	3.3	17	78	4	53	3	15	0	81	0.83
10246469--10246809	169	2.0	168	93	2	587	32	3	8	54	1.49
10246838--10246901	31	2.1	30	88	8	94	76	1	0	21	0.87
10246838--10246899	17	3.9	16	76	16	67	75	1	0	22	0.88
10247175--10247210	12	3.0	12	95	0	63	50	11	8	30	1.67
10247677--10247739	20	3.1	20	79	2	63	71	1	7	19	1.19
10247721--10247807	3	29.3	3	76	17	67	63	3	3	29	1.27
10247730--10247800	17	3.9	17	76	16	70	63	4	1	30	1.22
10258186--10258215	13	2.4	13	94	5	53	6	0	3	90	0.56
10260012--10261113	564	2.0	564	94	0	1956	25	25	17	31	1.97
10261000--10261162	87	1.9	87	88	0	245	23	26	14	35	1.93
10262696--10262758	22	2.7	23	78	7	65	65	1	0	33	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10262957--10262990	15	2.3	15	94	0	59	73	0	0	26	0.83
10267268--10267303	19	1.9	18	88	5	54	41	19	13	25	1.88
10267641--10267750	22	5.0	21	70	17	64	67	0	7	24	1.22
10267637--10267728	17	5.6	16	70	13	62	66	1	8	23	1.26
10267676--10267765	23	3.6	25	75	15	82	71	0	6	22	1.09
10267670--10267736	17	4.1	17	73	21	54	68	0	8	22	1.17
10267629--10267764	48	2.8	49	79	14	140	69	0	6	23	1.17
10267723--10267800	33	2.3	35	86	10	108	73	0	3	23	1.00
10268079--10268309	41	5.7	41	86	2	288	36	20	17	25	1.94
10268112--10268526	123	3.4	123	77	8	344	38	18	15	27	1.91
10269078--10269136	22	2.7	22	86	0	73	35	20	6	37	1.79
10270273--10270316	19	2.3	19	88	0	61	2	15	0	81	0.78
10270273--10270333	9	6.3	10	78	12	65	1	14	0	83	0.72
10270273--10270333	30	2.0	30	90	0	95	1	14	0	83	0.72
10270288--10270333	19	2.4	19	96	0	83	0	13	0	86	0.56
10270288--10270340	19	2.7	19	91	2	70	1	16	0	81	0.79
10270318--10270381	33	1.9	33	87	6	94	9	20	0	70	1.14
10271129--10272715	793	2.0	793	96	0	2960	31	15	20	32	1.94
10276082--10276145	21	3.2	21	72	18	73	48	7	23	20	1.75
10277605--10277649	15	3.0	15	78	12	56	15	2	2	80	0.92
10277744--10277796	25	2.0	26	82	7	63	37	9	5	47	1.60
10278634--10278677	17	2.6	16	83	16	54	70	2	9	18	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10278685--10278794	7	15.0	7	74	14	73	74	0	3	20	1.02
10278682--10278788	23	4.7	23	74	17	82	73	0	3	21	1.04
10278703--10278793	15	6.4	13	78	19	85	74	0	2	23	0.92
10278729--10278794	6	9.7	6	85	14	60	78	0	1	19	0.82
10284041--10284080	21	1.9	21	84	0	53	45	12	5	37	1.64
10287414--10287443	6	5.0	6	91	0	51	16	20	33	30	1.94
10291466--10291510	23	1.9	23	86	4	63	26	0	2	71	0.98
10305598--10305633	18	1.9	19	88	5	56	47	2	33	16	1.61
10306593--10306620	3	9.3	3	100	0	56	67	0	0	32	0.91
10307325--10307357	2	16.5	2	100	0	66	51	0	0	48	1.00
10307494--10307519	2	13.0	2	100	0	52	50	0	0	50	1.00
10308266--10308322	24	2.6	21	71	13	53	56	3	0	40	1.17
10309212--10309254	2	21.5	2	100	0	86	0	51	0	48	1.00
10309779--10309812	4	8.5	4	93	0	59	26	0	20	52	1.46
10315057--10315154	44	2.2	45	88	1	144	36	8	13	41	1.74
10319870--10319927	25	2.3	25	87	0	89	27	20	31	20	1.98
10321761--10321849	29	3.3	28	77	11	89	70	2	0	26	0.99
10321682--10321833	57	2.5	60	77	16	154	65	1	3	29	1.20
10323497--10323580	28	3.0	28	68	19	68	54	4	0	40	1.21
10325852--10325950	45	2.2	45	90	0	153	39	8	13	39	1.74
10330171--10330250	40	2.0	40	87	0	115	23	12	5	58	1.53
10330250--10330283	4	8.5	4	100	0	68	26	0	23	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10335522--10335619	44	2.2	45	90	1	153	35	9	13	41	1.76
10339514--10339579	31	2.1	31	83	10	82	25	0	4	69	1.07
10340737--10341005	50	5.5	49	87	4	332	39	21	12	26	1.89
10340737--10341005	48	5.6	47	87	3	299	39	21	12	26	1.89
10340755--10341005	95	2.6	99	86	4	341	38	21	13	26	1.90
10341027--10341064	19	2.0	19	94	0	67	47	13	5	34	1.65
10341046--10341210	48	3.4	48	84	2	215	41	20	9	29	1.82
10341501--10341730	99	2.3	99	90	0	352	43	22	12	21	1.86
10341510--10341954	242	1.8	245	82	4	574	42	21	13	22	1.87
10342253--10342337	33	2.5	34	77	7	102	36	12	14	36	1.84
10343206--10343256	26	2.0	26	84	0	66	9	11	3	74	1.19
10343906--10343934	10	2.7	11	89	10	51	0	13	0	86	0.58
10346151--10346215	30	2.2	30	91	5	105	27	6	44	21	1.76
10346222--10346324	49	2.1	49	85	7	138	36	23	12	27	1.91
10346374--10346667	147	2.0	147	87	4	423	40	20	14	24	1.90
10346499--10346935	196	2.3	188	84	5	552	42	20	13	24	1.88
10346499--10346835	99	3.4	98	80	10	391	40	20	14	24	1.90
10346779--10346964	42	4.3	42	76	11	176	42	20	10	25	1.85
10347661--10347696	18	2.0	18	100	0	72	11	33	0	55	1.35
10348285--10348316	10	3.3	10	95	4	57	9	0	6	84	0.78
10353326--10353371	21	2.1	23	88	8	69	28	4	0	67	1.10
10354545--10354629	30	2.9	30	75	15	104	29	10	42	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10364401--10364434	18	1.9	18	88	5	52	67	0	5	26	1.13
10364435--10364471	19	1.9	19	88	0	56	70	0	8	21	1.13
10364440--10364524	17	5.3	17	75	22	69	70	1	10	17	1.21
10365954--10366083	67	1.9	67	88	0	197	37	13	12	36	1.82
10368145--10368189	17	2.5	18	82	10	56	46	0	2	51	1.13
10368150--10368200	17	3.1	16	78	13	59	50	0	1	47	1.12
10369667--10369950	144	2.0	144	84	8	373	44	10	11	33	1.75
10371349--10371374	11	2.4	11	100	0	52	61	15	0	23	1.33
10371870--10372227	42	8.5	42	83	9	426	44	20	10	23	1.83
10371865--10372190	128	2.6	126	85	7	430	45	20	10	23	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91