genome.fa.s201.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  58  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9618726--9618756	2	15.5	2	93	0	53	0	45	3	51	1.17
9618756--9618783	2	14.0	2	100	0	56	50	0	0	50	1.00
9619644--9619856	104	2.1	104	94	2	376	35	12	15	36	1.86
9621619--9621656	18	2.1	18	85	9	51	47	0	7	44	1.32
9633619--9633660	22	2.0	21	90	4	66	66	0	0	33	0.92
9642210--9642256	2	23.5	2	95	0	85	48	2	0	48	1.13
9643146--9643182	15	2.5	15	91	4	58	70	5	0	24	1.08
9644846--9644900	8	6.8	8	74	17	51	18	0	1	80	0.81
9644848--9644880	17	1.9	17	93	0	57	15	0	0	84	0.61
9644858--9644913	23	2.4	23	80	11	62	19	0	5	75	1.00
9644970--9645022	16	3.4	16	82	15	74	69	0	5	24	1.09
9645485--9645546	21	2.9	22	73	21	60	53	32	1	12	1.49
9645466--9645787	14	22.1	14	67	15	111	49	31	1	17	1.58
9645557--9645765	58	3.6	57	77	7	181	47	31	2	18	1.61
9645554--9645765	116	1.8	116	79	6	250	48	31	2	17	1.61
9645557--9645765	30	7.3	27	70	11	96	47	31	2	18	1.61
9645742--9645787	16	3.1	15	82	11	60	54	23	2	19	1.55
9645828--9645859	16	2.0	16	93	0	55	50	25	3	21	1.64
9645466--9645866	14	27.3	15	65	18	80	48	31	1	18	1.58
9646522--9646573	26	2.0	26	85	7	70	42	3	15	38	1.65
9647149--9647719	287	2.0	287	99	0	1124	36	10	18	34	1.85
9653534--9654217	96	6.9	96	75	9	521	35	15	13	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9653630--9654216	202	2.9	197	82	6	667	34	14	14	35	1.87
9654242--9654295	22	2.4	23	81	9	67	33	16	12	37	1.87
9654306--9654413	37	2.9	36	80	2	117	18	13	13	53	1.72
9656394--9656440	21	2.2	21	88	0	67	55	29	0	14	1.40
9656408--9656525	14	8.2	14	64	15	53	52	27	0	20	1.47
9656420--9656583	28	5.7	28	71	12	100	48	26	1	23	1.61
9656422--9656583	58	2.8	58	84	5	186	49	25	1	23	1.60
9656422--9656548	30	4.4	30	76	13	113	50	25	0	23	1.55
9666346--9666370	13	1.9	13	100	0	50	48	0	0	52	1.00
9666637--9666682	16	2.8	17	77	12	60	54	8	15	21	1.68
9669356--9669659	59	5.0	60	88	5	443	34	13	6	44	1.70
9669357--9669659	122	2.5	123	87	7	449	34	13	6	44	1.69
9671624--9671662	18	2.2	18	90	0	60	12	38	7	41	1.72
9672442--9672493	16	3.1	16	86	8	68	67	0	1	30	1.02
9672441--9672480	19	2.0	20	85	4	55	72	0	2	25	0.97
9672445--9672494	17	3.0	16	85	8	64	64	0	2	34	1.05
9672541--9672595	24	2.2	24	81	9	67	69	3	1	25	1.15
9672515--9672640	66	1.9	66	80	9	150	70	3	5	19	1.23
9672804--9672870	1	67.0	1	78	0	71	0	0	10	89	0.48
9672804--9672870	8	8.5	8	87	9	86	0	0	10	89	0.48
9672804--9672867	10	6.6	10	87	8	89	0	0	10	89	0.50
9672928--9673079	41	3.7	41	89	6	218	38	23	15	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9672928--9673079	42	3.7	41	90	6	218	38	23	15	22	1.92
9676256--9676297	20	2.1	20	86	0	57	80	2	9	7	0.97
9677147--9677257	55	2.0	57	84	7	147	38	6	2	52	1.41
9677578--9677614	15	2.3	17	81	13	51	70	5	0	24	1.08
9677568--9677614	16	3.1	15	87	6	60	68	6	0	25	1.13
9680633--9681318	96	6.9	96	77	7	559	35	15	13	35	1.86
9680633--9681276	202	3.2	199	82	6	675	35	14	13	35	1.86
9681326--9681370	23	2.0	23	86	0	63	26	15	17	40	1.90
9681415--9681509	37	2.6	37	81	3	111	15	10	14	58	1.62
9681560--9681598	10	4.0	10	80	6	53	82	2	0	15	0.79
9681560--9681595	9	3.9	9	88	3	54	86	2	0	11	0.68
9681560--9681597	19	2.0	19	89	0	58	84	2	0	13	0.73
9681838--9681877	19	2.0	20	85	4	55	85	0	10	5	0.75
9683161--9683208	3	16.3	3	95	4	89	68	0	0	31	0.90
9683519--9683586	21	3.2	21	93	4	111	52	36	0	10	1.35
9683561--9683709	14	10.1	14	69	15	77	49	27	4	18	1.67
9686729--9686767	18	2.1	18	85	4	51	7	35	10	46	1.67
9688555--9688617	21	3.0	21	88	4	92	36	31	9	22	1.86
9689243--9689289	13	3.1	15	82	11	53	65	10	0	23	1.23
9695774--9695823	2	25.5	2	95	4	93	0	48	0	52	1.00
9700379--9700421	16	2.6	17	78	10	54	55	9	13	20	1.66
9703192--9703227	16	2.2	16	85	0	54	38	0	11	50	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9708780--9708832	3	17.7	3	92	0	88	66	1	1	30	1.13
9714480--9714521	21	1.9	23	85	9	61	28	0	0	71	0.86
9714919--9715017	30	3.3	30	88	0	135	55	3	5	36	1.37
9718463--9718503	11	3.6	11	87	6	55	68	14	0	17	1.22
9718457--9718503	17	2.7	18	87	6	62	68	12	0	19	1.21
9718457--9718503	6	8.2	6	88	9	62	68	12	0	19	1.21
9722881--9722905	10	2.5	10	100	0	50	68	20	0	12	1.21
9728281--9728358	35	2.2	35	97	0	147	20	19	12	47	1.82
9729948--9729983	14	2.5	15	91	8	58	47	0	0	52	1.00
9735032--9735076	18	2.5	18	92	0	72	44	6	15	33	1.73
9740232--9740263	2	16.0	2	100	0	64	50	0	0	50	1.00
9741650--9741683	17	1.9	18	88	5	52	85	5	2	5	0.83
9741673--9741715	13	3.2	13	80	6	50	74	2	18	4	1.10
9746239--9746292	27	2.0	28	85	10	76	3	22	3	70	1.19
9746848--9746893	20	2.3	20	92	0	74	52	0	17	30	1.45
9747414--9747440	12	2.2	12	100	0	54	7	18	7	66	1.40
9748909--9748946	18	2.1	18	90	0	58	68	10	0	21	1.19
9756976--9757028	25	2.2	24	86	6	72	79	5	3	11	1.03
9757765--9757810	23	2.0	24	86	4	67	39	2	0	58	1.10
9760474--9760500	10	2.7	10	100	0	54	92	0	7	0	0.38
9764288--9764329	21	2.0	21	85	0	57	19	2	4	73	1.12
9764923--9765009	30	3.0	29	85	6	113	39	6	1	52	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9771130--9771182	3	17.7	3	92	0	88	30	1	1	66	1.13
9778434--9778988	58	9.7	56	81	10	560	36	12	6	44	1.68
9778433--9778987	174	3.2	171	84	8	645	36	12	6	44	1.68
9779007--9779078	5	14.4	5	73	21	55	77	0	5	16	0.94
9779007--9779081	28	2.6	28	78	16	82	78	0	5	16	0.92
9779002--9779083	8	9.8	8	71	19	51	78	0	4	17	0.93
9779540--9779604	31	2.1	32	88	8	98	49	15	13	21	1.79
9779929--9780015	24	3.6	23	75	13	86	70	0	4	25	1.06
9779944--9780008	17	3.9	17	84	6	80	64	0	6	29	1.17
9779957--9780019	29	2.2	28	83	8	74	71	0	4	23	1.05
9779946--9780090	36	3.6	39	75	16	118	68	0	4	26	1.12
9779928--9780019	4	22.8	4	68	10	53	70	0	4	25	1.05
9779944--9780101	33	4.7	33	74	14	96	69	0	4	25	1.11
9779968--9780034	29	2.3	30	85	12	86	68	1	5	23	1.20
9779933--9780040	47	2.2	48	81	13	125	70	0	5	23	1.14
9779952--9780055	17	6.1	17	67	20	56	68	0	5	25	1.18
9780025--9780101	6	12.0	6	77	14	57	72	0	1	25	0.92
9779957--9780089	69	1.9	70	81	9	164	69	0	4	24	1.11
9780025--9780101	34	2.4	30	87	10	100	72	0	1	25	0.92
9780419--9780714	41	7.1	41	86	6	339	37	21	15	25	1.93
9780413--9780714	125	2.4	123	85	8	398	38	21	15	25	1.92
9782435--9782482	18	2.8	17	78	12	53	8	14	0	77	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9787303--9787692	58	6.7	57	83	6	437	35	12	7	43	1.72
9787303--9787692	116	3.4	113	85	4	494	35	12	7	43	1.72
9787305--9787696	174	2.2	172	83	6	486	35	12	7	43	1.71
9787756--9787786	3	10.7	3	93	6	55	70	0	0	29	0.87
9787711--9787786	6	13.3	6	75	22	58	71	2	0	26	1.00
9787711--9787786	9	8.9	9	76	18	58	71	2	0	26	1.00
9788244--9788308	31	2.1	32	85	8	89	46	13	16	23	1.83
9788651--9788704	19	2.9	19	84	10	60	66	0	7	25	1.17
9788647--9788712	17	4.1	17	74	16	68	65	0	7	27	1.20
9788706--9788768	23	2.7	22	80	9	72	73	1	4	20	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91