genome.fa.s201.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  14  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2515719--2515766	18	2.7	18	93	0	87	22	6	35	35	1.80
2515736--2515805	18	3.9	18	75	7	70	30	5	31	32	1.81
2519320--2519360	20	2.0	21	85	4	57	68	9	0	21	1.18
2519752--2520207	149	3.1	150	96	0	835	59	10	2	27	1.43
2520411--2520456	20	2.3	20	88	0	65	21	65	0	13	1.26
2527821--2527865	18	2.5	18	88	0	63	53	2	0	44	1.13
2527880--2527927	19	2.6	19	83	3	71	52	4	2	41	1.32
2545825--2545871	22	2.1	22	84	7	60	48	0	0	51	1.00
2545872--2545923	26	2.0	25	88	7	77	67	0	0	32	0.91
2549557--2549922	58	6.1	58	79	13	350	36	10	8	44	1.70
2549920--2550008	5	17.8	5	76	11	67	77	0	7	14	0.98
2549920--2550001	29	2.8	29	81	12	96	78	0	8	13	0.97
2549954--2550023	11	6.7	11	79	11	60	74	0	5	20	1.02
2550032--2550089	4	14.8	4	76	16	59	77	3	0	18	0.91
2550035--2550087	7	7.4	7	78	16	56	79	3	0	16	0.88
2559639--2560041	61	6.7	59	78	9	386	35	11	6	45	1.67
2559637--2560039	119	3.3	118	81	10	435	35	11	7	45	1.68
2559794--2560068	64	4.4	63	79	10	282	35	10	6	47	1.65
2559690--2560068	183	2.1	181	91	2	616	35	11	6	46	1.66
2560066--2560158	5	18.6	5	73	10	57	75	1	7	16	1.08
2560065--2560143	29	2.7	29	82	9	90	77	1	8	12	1.06
2560130--2560213	4	20.0	4	74	22	66	70	3	0	26	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2560170--2560228	8	7.5	8	79	9	50	77	1	0	20	0.85
2561013--2561183	5	34.4	5	70	15	52	69	4	4	21	1.25
2561013--2561110	18	5.1	19	71	14	67	70	6	3	20	1.23
2561013--2561066	23	2.3	24	87	3	74	77	5	1	14	1.03
2561068--2561117	22	2.3	22	86	10	68	62	8	6	24	1.46
2561153--2561182	11	2.6	11	94	5	51	73	0	0	26	0.84
2561269--2561343	7	12.2	6	77	16	57	76	1	2	20	0.99
2561262--2561343	32	2.7	29	76	12	83	75	1	2	20	0.98
2561262--2561363	25	4.0	24	77	14	82	74	0	4	19	1.06
2561594--2561632	2	19.5	2	100	0	78	48	0	0	51	1.00
2567097--2567121	9	2.8	9	100	0	50	8	0	0	92	0.40
2569685--2569724	20	2.0	20	85	0	53	27	10	7	55	1.60
2570488--2570542	3	18.3	3	92	7	94	65	1	0	32	1.03
2575189--2575237	3	16.3	3	100	0	98	65	0	0	34	0.93
2575244--2575311	20	3.5	19	84	7	68	48	10	7	33	1.65
2575439--2575500	24	2.6	24	85	7	81	53	9	3	33	1.50
2575605--2575646	21	2.0	22	90	4	68	59	11	2	26	1.45
2575610--2575712	33	3.2	33	71	16	81	60	11	1	26	1.42
2575580--2575724	53	2.7	53	93	0	245	57	11	3	27	1.49
2575695--2575780	32	2.8	32	79	8	81	55	9	4	30	1.52
2575758--2575920	20	8.6	20	73	17	109	50	11	6	31	1.64
2575843--2575890	16	3.0	16	78	0	60	56	8	6	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2575827--2575890	32	2.0	33	90	3	103	54	9	4	31	1.53
2576940--2577116	67	2.6	66	81	7	230	59	5	7	27	1.48
2576940--2577136	67	2.9	66	76	15	199	59	6	8	25	1.50
2577584--2577615	12	2.6	13	90	9	50	21	3	0	75	0.95
2588724--2588756	3	11.0	3	87	12	50	66	3	0	30	1.06
2591187--2591242	20	2.6	22	73	15	55	37	12	7	42	1.70
2593099--2593289	66	2.9	67	81	9	232	57	6	10	26	1.56
2593325--2593362	15	2.5	15	87	8	51	36	0	2	60	1.11
2595907--2596055	3	49.3	3	83	7	178	32	2	2	62	1.21
2599966--2600069	50	2.1	50	87	0	145	55	15	14	14	1.69
2601277--2601425	68	2.2	68	81	2	192	29	20	11	38	1.87
2601574--2601763	64	3.0	63	82	5	195	17	24	13	45	1.84
2601696--2602239	120	4.5	120	77	4	495	19	22	13	44	1.86
2601676--2602237	240	2.3	240	80	2	644	19	22	14	44	1.86
2602386--2602433	17	2.8	18	87	9	73	41	0	4	54	1.20
2602419--2602527	3	36.0	3	80	7	114	33	2	3	60	1.28
2611492--2611524	2	16.5	2	93	0	57	48	0	3	48	1.17
2612088--2612125	19	2.0	19	100	0	76	47	0	26	26	1.52
2615892--2615925	10	3.4	10	91	0	59	41	0	29	29	1.57
2619410--2619444	13	2.7	13	90	0	52	2	8	0	88	0.61
2624689--2624723	14	2.5	14	90	9	54	48	11	0	40	1.39
2636582--2636662	41	2.0	41	97	0	153	49	17	2	30	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2637452--2637494	14	3.0	14	82	3	50	46	0	0	53	1.00
2637728--2637763	17	2.2	16	90	5	54	25	19	2	52	1.59
2637867--2637950	16	4.9	16	75	12	69	48	2	0	48	1.14
2637894--2637946	20	2.8	19	78	16	65	49	1	0	49	1.12
2638498--2638536	20	2.0	21	85	10	55	38	2	0	58	1.12
2640550--2640595	23	2.0	23	83	8	58	73	0	17	8	1.07
2640568--2640620	25	2.1	26	86	6	74	69	0	20	9	1.15
2641854--2641911	21	2.7	22	83	2	73	41	3	15	39	1.64
2641874--2641918	21	2.1	21	87	0	63	51	0	13	35	1.41
2641931--2641990	20	2.9	21	85	2	68	36	10	16	36	1.82
2641871--2642210	79	4.3	79	87	1	421	37	10	17	34	1.84
2642013--2642069	21	2.8	20	84	5	78	36	10	17	35	1.84
2642099--2642137	20	1.9	21	84	5	53	38	15	12	33	1.85
2642460--2642813	122	2.9	122	90	2	530	24	9	18	46	1.79
2642460--2642813	42	8.6	41	83	3	399	24	9	18	46	1.79
2642745--2642841	42	2.3	42	81	1	104	27	9	18	44	1.80
2643325--2643364	21	1.9	21	90	10	64	27	5	10	57	1.52
2644062--2644107	8	5.6	9	87	7	55	78	2	0	19	0.86
2644071--2644108	8	4.8	8	93	0	67	76	2	0	21	0.91
2645142--2645195	22	2.7	20	73	15	58	44	9	0	46	1.35
2645179--2645348	72	2.4	72	83	2	234	34	8	7	48	1.63
2646464--2646498	14	2.5	14	86	13	54	65	20	0	14	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2649397--2649479	29	2.8	30	75	12	75	44	4	12	38	1.63
2650916--2650958	21	2.1	20	82	4	50	34	6	23	34	1.82
2650946--2650985	21	1.9	21	94	0	71	40	7	17	35	1.78
2654713--2654744	16	2.0	16	100	0	64	43	6	25	25	1.77
2658504--2658566	2	33.5	2	75	12	62	46	4	0	49	1.23
2658964--2658998	18	1.9	18	88	0	52	51	8	5	34	1.56
2667241--2667308	24	2.8	24	82	4	84	29	23	7	39	1.82
2667208--2667308	48	2.1	48	83	7	125	31	24	5	37	1.80
2667245--2667312	12	5.7	12	76	0	64	30	20	8	39	1.83
2672101--2672136	16	2.2	17	95	5	65	61	0	0	38	0.96
2673195--2673243	15	3.1	15	78	16	55	69	4	2	24	1.17
2673710--2673740	16	1.9	16	93	0	53	45	22	0	32	1.53
2673947--2674105	8	20.5	8	69	13	66	50	26	1	20	1.58
2673903--2674061	16	10.3	15	67	12	72	50	25	1	22	1.59
2673960--2674097	30	4.5	30	72	16	79	50	26	2	21	1.60
2674536--2674569	17	2.1	17	94	5	61	14	11	5	67	1.39
2674533--2674579	17	2.6	17	80	6	58	17	8	4	70	1.29
2675509--2675581	5	14.4	5	70	18	53	16	4	1	78	0.98
2675516--2675586	20	3.6	19	77	7	61	16	4	1	77	1.00
2675508--2675591	11	6.8	12	73	17	57	16	4	1	77	1.00
2675508--2675591	25	3.2	26	74	16	75	16	4	1	77	1.00
2675503--2675596	16	5.7	16	76	16	68	17	6	1	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2675633--2675731	50	1.9	52	89	6	157	47	10	14	28	1.76
2675681--2676011	59	5.5	58	83	10	407	47	8	11	32	1.70
2675685--2676011	121	2.7	119	87	7	453	47	8	11	33	1.69
2679861--2679929	27	2.5	27	79	13	79	76	0	17	5	0.97
2681177--2681552	41	9.1	41	92	3	605	23	16	24	35	1.95
2681559--2681650	1	92.0	1	78	0	94	89	7	0	3	0.59
2681559--2681650	34	2.7	34	90	5	134	89	7	0	3	0.59
2682495--2682545	20	2.6	19	81	9	66	27	17	21	33	1.96
2682932--2682991	21	2.9	20	72	20	52	15	5	1	78	1.00
2682910--2682996	30	2.8	31	77	10	88	17	5	2	74	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91