genome.fa.s201.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  87  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14666425--14666465	18	2.2	19	83	12	50	65	0	2	31	1.05
14666807--14666864	30	2.0	29	82	3	71	27	10	6	55	1.59
14668770--14668812	2	21.5	2	100	0	86	48	0	51	0	1.00
14669110--14669143	14	2.4	14	90	9	52	82	5	0	11	0.83
14669098--14669150	17	3.1	16	80	17	54	83	3	3	9	0.90
14672534--14672604	35	2.0	35	91	0	115	42	19	21	16	1.89
14677220--14677259	19	2.0	21	90	9	66	55	10	7	27	1.60
14677388--14677440	21	2.4	22	84	9	72	54	18	7	18	1.67
14678575--14679175	303	2.0	302	98	1	1168	45	7	10	36	1.66
14680539--14680573	15	2.2	16	90	5	54	17	5	8	68	1.35
14684727--14685184	226	2.0	227	90	0	711	46	10	11	31	1.74
14692010--14692054	3	15.0	3	100	0	90	33	0	0	66	0.92
14696799--14696862	23	2.6	24	75	9	67	50	4	4	40	1.44
14696993--14697047	28	2.0	28	82	7	67	30	3	3	61	1.30
14697571--14697595	9	2.8	9	100	0	50	40	0	0	60	0.97
14699502--14699543	17	2.5	17	100	0	84	47	0	28	23	1.52
14702705--14702877	62	2.8	62	81	7	183	39	12	16	31	1.85
14703215--14703430	64	3.4	65	75	6	226	36	13	16	34	1.87
14703169--14703370	64	3.2	63	73	8	169	36	12	15	36	1.85
14703169--14703382	63	3.4	63	73	7	166	36	12	14	35	1.84
14703174--14703430	127	2.0	125	86	3	354	37	11	15	35	1.84
14706762--14706830	28	2.5	28	85	4	86	46	20	4	28	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14718680--14718712	15	2.1	16	88	5	50	78	0	15	6	0.93
14722878--14722946	18	3.8	18	73	17	63	72	4	1	21	1.10
14722966--14723026	20	3.0	20	82	2	77	37	3	3	55	1.32
14723072--14723146	18	4.1	17	76	17	71	32	1	2	64	1.16
14723081--14723153	38	1.9	38	91	0	119	27	1	2	68	1.11
14723072--14723146	17	4.1	18	77	14	82	32	1	2	64	1.16
14723138--14723194	26	2.2	26	78	6	62	26	3	3	66	1.24
14723574--14723619	24	1.9	24	86	0	65	39	8	2	50	1.46
14725392--14725423	15	2.1	15	100	0	64	53	0	0	46	1.00
14731085--14731125	20	2.0	20	90	0	64	48	0	4	46	1.23
14740592--14740703	30	3.7	30	82	0	134	52	0	2	43	1.21
14740586--14740703	60	2.0	58	88	3	173	51	0	2	44	1.20
14746660--14746688	2	14.5	2	100	0	58	51	0	0	48	1.00
14756152--14756198	24	2.0	23	83	4	58	14	10	4	70	1.31
14762948--14763001	22	2.4	21	87	9	72	44	0	5	50	1.25
14763509--14763549	20	2.0	20	86	13	57	34	0	0	65	0.93
14763529--14763598	30	2.3	30	77	0	77	41	0	1	57	1.08
14763566--14763617	22	2.5	22	93	6	90	50	0	0	50	1.00
14764047--14764083	18	2.0	19	89	5	58	35	8	5	51	1.55
14766361--14766407	11	4.1	11	83	8	58	21	0	2	76	0.89
14767233--14767283	21	2.4	22	75	21	54	60	0	1	37	1.08
14768744--14768785	21	2.0	21	100	0	84	14	28	9	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14771086--14771150	32	2.0	32	90	0	103	30	18	9	41	1.82
14772228--14772255	3	9.3	3	100	0	56	32	0	67	0	0.91
14793492--14793531	19	2.1	19	85	0	53	52	0	0	47	1.00
14793903--14793953	24	2.1	24	82	7	59	43	0	0	56	0.99
14804464--14804520	10	5.3	11	76	17	57	29	0	1	68	1.00
14804481--14804510	13	2.3	13	100	0	60	36	0	0	63	0.95
14804492--14804551	31	1.9	31	83	12	79	33	0	5	61	1.17
14804464--14804546	3	28.0	3	70	20	59	32	0	2	65	1.06
14804589--14804623	2	18.0	2	94	5	63	48	0	0	51	1.00
14806004--14806073	16	3.9	18	74	10	63	68	1	5	24	1.19
14806183--14806218	11	3.1	11	85	14	54	69	0	0	30	0.89
14806185--14806261	24	3.3	23	77	16	70	58	0	0	41	0.98
14811927--14811973	16	2.7	18	80	12	62	29	0	2	68	1.02
14816793--14816990	101	2.0	102	83	1	254	32	16	19	31	1.94
14817262--14817365	49	2.1	49	90	0	163	29	11	21	37	1.88
14818064--14818132	34	2.0	35	94	2	122	14	13	11	60	1.58
14822881--14822921	2	20.5	2	100	0	82	51	0	0	48	1.00
14825055--14825085	14	2.2	14	94	0	53	61	3	0	35	1.12
14825469--14825512	16	2.9	15	90	9	72	40	0	6	52	1.28
14833575--14833602	2	14.0	2	100	0	56	50	0	0	50	1.00
14833765--14833831	35	1.9	35	87	6	100	56	1	4	37	1.29
14833821--14833870	21	2.4	21	83	6	57	62	2	2	34	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14834439--14834486	3	16.0	3	100	0	96	33	0	0	66	0.92
14839091--14839138	23	2.1	23	84	7	62	33	0	8	58	1.28
14840067--14840099	10	3.3	10	84	16	50	54	6	0	39	1.25
14842064--14842106	4	10.8	4	94	0	50	48	9	0	41	1.35
14842064--14842105	12	3.5	12	86	0	57	50	9	0	40	1.35
14844863--14844919	16	3.6	16	71	17	55	15	26	1	56	1.50
14847289--14847336	3	16.0	3	95	0	87	66	2	0	31	1.03
14850437--14850467	2	15.5	2	93	0	53	0	0	45	54	0.99
14852373--14852397	13	1.9	13	100	0	50	64	0	4	32	1.12
14852422--14852483	28	2.2	28	85	2	90	62	0	0	37	0.95
14852423--14852484	13	4.7	13	75	9	63	62	0	0	37	0.95
14861874--14861898	12	2.1	12	100	0	50	44	0	0	56	0.99
14864770--14864809	2	20.0	2	100	0	80	0	50	0	50	1.00
14870628--14870661	16	2.1	17	88	5	52	44	5	0	50	1.26
14872674--14872708	18	1.9	18	88	0	52	25	5	0	68	1.11
14872671--14872732	31	2.0	31	84	6	81	22	8	0	69	1.14
14877176--14877228	9	5.9	9	81	0	70	41	16	1	39	1.60
14877176--14877228	18	2.9	18	85	0	79	41	16	1	39	1.60
14877547--14877600	27	2.0	27	85	3	72	27	3	7	61	1.40
14883167--14883221	24	2.5	22	82	11	67	16	7	0	76	1.00
14884955--14884985	11	2.8	11	100	0	62	38	19	0	41	1.51
14885369--14885432	34	1.9	33	87	6	94	40	9	12	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14907801--14907895	50	1.9	50	86	4	138	62	1	0	36	1.03
14907845--14907918	24	3.1	25	82	9	73	60	1	0	37	1.05
14907841--14907892	27	1.9	27	81	14	63	65	1	0	32	1.04
14916500--14916527	2	14.0	2	100	0	56	50	0	0	50	1.00
14916817--14916863	3	16.7	3	78	12	55	31	0	2	65	1.04
14916823--14916862	8	4.9	8	88	11	55	35	0	0	65	0.93
14933315--14933577	42	6.2	42	70	20	174	43	0	1	54	1.13
14933341--14933409	21	3.3	21	67	20	63	46	1	0	52	1.09
14933440--14933637	14	13.9	14	65	23	60	43	0	1	54	1.10
14933351--14933653	84	3.6	83	76	16	325	45	0	0	52	1.12
14933295--14933637	170	2.0	171	99	0	679	44	0	1	54	1.12
14933392--14933634	42	5.7	41	68	21	169	45	0	1	53	1.11
14935812--14935964	79	2.0	78	85	2	209	29	12	12	45	1.78
14936295--14936328	17	2.0	17	88	11	52	35	5	0	58	1.22
14936429--14936467	17	2.3	17	86	8	53	28	0	2	69	1.02
14937913--14937937	12	2.1	12	100	0	50	56	0	0	44	0.99
14938879--14938935	23	2.5	23	82	2	62	45	5	10	38	1.61
14938968--14939025	15	3.9	15	74	14	57	62	10	5	22	1.47
14940976--14941082	29	3.6	30	76	7	85	51	9	3	35	1.52
14950176--14950209	1	34.0	1	100	0	68	100	0	0	0	0.00
14955173--14955197	12	2.1	12	100	0	50	36	24	16	24	1.94
14956256--14956944	341	2.0	341	97	0	1315	37	21	15	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14959493--14959552	26	2.2	26	79	5	66	40	5	3	51	1.40
14961031--14961070	17	2.4	17	87	8	55	65	2	0	32	1.06
14961030--14961070	16	2.3	18	80	16	50	65	2	0	31	1.05
14961604--14961641	20	1.9	20	88	0	58	76	2	21	0	0.91
14969246--14969280	2	17.5	2	93	0	61	51	0	0	48	1.00
14974655--14974681	14	1.9	14	100	0	54	29	25	0	44	1.54
14974680--14974713	2	17.0	2	100	0	68	50	0	0	50	1.00
14975319--14975343	10	2.5	10	100	0	50	52	36	0	12	1.39
14977556--14977596	12	3.2	13	76	16	50	36	0	0	63	0.95
14982569--14982642	20	3.7	20	80	8	71	18	16	29	35	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91