genome.fa.s201.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  71  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11835534--11835589	24	2.4	24	77	19	64	12	10	1	75	1.14
11835623--11836083	119	3.9	119	85	7	632	44	6	13	35	1.70
11835622--11836084	58	7.8	59	85	8	584	44	6	13	35	1.71
11835625--11836079	179	2.6	176	90	3	707	44	6	13	35	1.70
11835980--11836068	25	3.2	25	64	27	63	46	4	15	33	1.66
11838001--11838074	36	2.1	36	89	0	112	24	8	4	63	1.39
11840161--11840190	15	2.0	15	93	0	51	50	0	23	26	1.50
11840394--11840431	19	2.0	19	100	0	76	36	31	15	15	1.90
11841023--11841047	7	3.6	7	100	0	50	12	0	0	88	0.53
11847195--11847242	22	2.2	22	85	10	64	56	4	0	39	1.19
11847445--11847503	31	2.0	29	83	12	75	30	10	0	59	1.30
11850617--11850683	28	2.4	27	76	11	64	32	0	2	64	1.09
11851180--11851231	22	2.4	21	75	9	50	69	0	13	17	1.19
11851927--11851960	16	2.1	16	100	0	68	17	0	11	70	1.16
11863174--11863225	28	2.0	26	85	11	70	78	0	13	7	0.94
11863167--11863221	18	3.2	16	75	14	56	80	0	14	5	0.89
11863460--11863519	22	2.7	22	72	12	59	58	5	3	33	1.36
11863474--11863518	21	2.1	22	83	4	56	60	6	2	31	1.35
11864733--11864759	2	13.5	2	100	0	54	48	0	0	51	1.00
11864973--11865017	23	2.0	23	81	0	54	37	15	11	35	1.83
11872763--11872800	19	2.1	18	90	5	58	28	5	0	65	1.14
11872807--11872845	20	2.0	20	94	0	69	48	12	0	38	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11874089--11874131	18	2.3	18	76	4	50	53	0	0	46	1.00
11874106--11874155	17	2.9	17	76	5	57	46	0	0	54	1.00
11874093--11874143	25	2.0	27	84	7	70	49	0	0	50	1.00
11874433--11874471	3	12.7	3	94	5	69	33	0	0	66	0.92
11875773--11875822	12	4.2	12	79	5	57	52	2	2	44	1.24
11875777--11875823	23	2.0	23	87	0	67	53	2	2	42	1.25
11878207--11878250	22	2.0	22	86	8	63	34	9	11	45	1.72
11887319--11887626	124	2.6	118	87	6	423	32	13	7	45	1.72
11887319--11887586	60	4.4	61	81	12	309	32	14	7	45	1.72
11887659--11887696	12	3.0	13	88	7	60	81	2	7	7	0.96
11887659--11887728	13	5.9	12	78	10	65	78	2	7	11	1.05
11887654--11887728	34	2.2	34	83	11	91	78	2	6	12	1.04
11887664--11887702	12	3.2	12	88	3	51	84	2	5	7	0.84
11887688--11887725	17	2.3	17	86	4	51	78	2	5	13	1.02
11887746--11887800	4	13.2	4	78	14	58	72	5	0	21	1.04
11887665--11887800	9	14.7	9	72	18	66	72	4	2	19	1.14
11888559--11889105	58	9.5	56	86	7	765	33	14	8	42	1.77
11888559--11889105	291	1.9	289	94	3	965	33	14	8	42	1.77
11889157--11889222	6	11.3	6	79	6	73	80	1	4	13	0.94
11890326--11890455	6	20.8	6	69	25	51	61	4	0	33	1.16
11890321--11890443	25	5.2	24	71	21	82	61	4	0	34	1.15
11890328--11890451	46	2.6	47	72	19	123	61	4	0	33	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11891233--11891302	29	2.6	26	80	13	72	65	5	0	28	1.15
11891598--11891789	99	1.9	99	91	4	314	40	14	14	31	1.85
11891932--11891970	6	6.3	6	82	5	51	66	2	0	30	1.05
11895304--11895404	50	2.0	50	90	3	159	42	11	7	37	1.71
11899876--11899913	15	2.6	15	83	4	51	50	2	0	47	1.15
11899899--11899945	21	2.2	22	81	11	53	53	6	2	38	1.39
11905915--11905960	22	2.1	22	84	4	58	30	8	2	58	1.40
11907134--11907168	15	2.4	15	90	4	54	51	0	2	45	1.16
11909197--11909295	30	3.3	30	80	9	94	37	10	0	52	1.35
11910138--11910176	2	19.5	2	94	0	69	46	0	0	53	1.00
11911438--11912040	58	10.5	56	80	7	543	34	10	7	47	1.66
11911436--11912056	115	5.4	115	79	5	591	34	10	7	47	1.66
11911438--11912042	173	3.5	168	81	7	583	34	10	7	47	1.66
11912136--11912194	17	3.6	16	78	13	59	72	5	6	15	1.23
11912453--11912488	18	2.0	18	88	0	54	16	19	2	61	1.47
11913214--11913580	85	4.4	85	76	10	274	45	13	18	21	1.84
11913313--11913480	79	2.1	80	82	9	211	47	13	17	22	1.81
11913557--11913620	31	2.1	31	96	0	119	54	15	10	18	1.70
11913429--11913614	85	2.2	85	79	4	207	46	13	19	19	1.83
11913561--11913628	31	2.2	31	91	2	109	54	16	11	17	1.71
11913476--11913692	116	1.9	116	81	5	269	48	14	17	19	1.81
11913588--11913778	85	2.2	86	81	4	226	50	13	15	21	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11915023--11915088	3	22.3	3	93	3	116	33	1	0	65	1.02
11916062--11916264	100	2.0	100	94	0	352	33	8	7	50	1.62
11917641--11917679	17	2.3	17	86	0	60	46	0	2	51	1.14
11919267--11919322	22	2.5	22	73	21	62	50	7	10	32	1.64
11919347--11919433	22	4.0	22	73	0	75	48	5	8	37	1.57
11919327--11919433	44	2.4	44	83	6	119	49	5	8	36	1.57
11919595--11919674	22	3.7	21	79	9	81	48	8	7	35	1.62
11919706--11919790	11	7.8	10	75	16	71	62	4	2	30	1.28
11921259--11921330	11	6.5	11	72	4	56	54	2	1	41	1.23
11921259--11921330	22	3.3	21	78	7	81	54	2	1	41	1.23
11922725--11922767	21	2.0	21	100	0	86	34	4	4	55	1.41
11923646--11923733	22	4.1	21	77	11	90	47	6	6	38	1.57
11923788--11923981	22	8.9	22	71	12	103	47	9	10	32	1.69
11923790--11923895	44	2.4	44	79	0	122	48	11	11	29	1.74
11923882--11923981	43	2.3	44	80	1	112	47	7	11	35	1.66
11923661--11923982	22	14.9	22	66	13	89	46	8	10	34	1.69
11924278--11924366	22	4.1	21	80	11	83	57	5	3	33	1.39
11924276--11924332	20	2.8	21	84	12	66	57	3	3	35	1.33
11924256--11924355	11	9.3	11	69	19	68	60	4	3	33	1.31
11924341--11924412	22	3.3	22	74	0	63	47	5	11	36	1.63
11924565--11924665	21	4.7	22	75	6	73	51	3	4	39	1.42
11925014--11925128	22	5.2	23	73	12	89	47	2	9	40	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11924978--11925096	11	10.8	11	65	16	59	49	4	8	37	1.52
11925035--11925092	23	2.6	23	83	2	73	51	1	8	37	1.43
11924912--11925110	22	9.0	22	69	10	102	48	4	10	37	1.57
11924996--11925138	22	6.5	22	71	8	85	48	3	10	37	1.55
11925614--11925641	2	14.0	2	100	0	56	50	0	0	50	1.00
11927444--11927488	22	2.0	22	95	0	81	44	8	15	31	1.77
11931095--11931149	20	2.8	20	73	15	51	43	1	3	50	1.30
11931401--11931481	39	2.1	39	90	0	126	49	13	12	24	1.76
11932176--11932258	22	3.8	22	80	3	78	51	3	7	37	1.47
11932114--11932258	44	3.3	43	76	3	148	49	5	8	36	1.56
11932338--11932457	22	5.6	22	75	9	104	50	6	9	34	1.61
11932645--11932749	44	2.4	44	82	6	124	43	5	12	38	1.66
11932676--11932773	22	4.5	22	84	0	97	42	7	11	38	1.68
11932673--11932773	44	2.3	44	84	3	123	43	6	10	38	1.67
11932781--11932823	22	2.0	22	90	9	70	46	2	11	39	1.53
11932810--11932995	96	2.0	94	88	8	279	40	5	10	42	1.64
11932936--11933067	22	6.0	22	70	9	74	44	6	9	40	1.61
11933040--11933078	20	2.0	20	85	10	53	46	10	7	35	1.67
11933475--11933540	22	3.0	23	76	14	75	45	9	12	33	1.73
11933568--11933619	22	2.4	22	83	6	61	51	5	7	34	1.54
11933579--11933687	22	5.0	21	76	11	87	51	8	8	32	1.61
11933579--11933688	44	2.5	44	83	2	141	51	8	8	31	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11933815--11933865	21	2.4	21	83	3	66	45	0	13	41	1.44
11934067--11934124	20	2.8	20	89	7	82	51	3	5	39	1.41
11934059--11934147	11	8.2	11	67	15	51	55	4	4	35	1.41
11934262--11934331	22	3.2	21	70	11	52	44	8	7	40	1.62
11934360--11934410	21	2.4	22	80	9	61	54	5	5	33	1.48
11934697--11934801	44	2.4	44	77	3	113	48	8	8	34	1.64
11934783--11934939	66	2.4	65	77	7	149	51	4	8	35	1.53
11934809--11935007	22	9.0	21	70	12	114	49	3	10	36	1.53
11935203--11935253	22	2.3	22	75	0	57	50	5	7	35	1.55
11935267--11935437	44	3.9	44	75	8	116	47	4	9	39	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91