genome.fa.s201.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  26  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4590685--4590741	17	3.2	18	82	7	71	40	1	0	57	1.09
4592651--4592693	20	2.2	19	84	12	52	39	4	4	51	1.44
4593047--4593090	22	2.1	21	83	8	54	56	2	0	40	1.11
4594697--4594728	2	16.0	2	100	0	64	50	0	0	50	1.00
4595118--4595186	31	2.3	31	80	5	79	42	10	11	36	1.75
4597891--4597962	30	2.4	30	85	0	90	40	16	1	41	1.57
4598024--4598092	28	2.4	28	87	4	93	53	1	8	36	1.41
4599451--4599483	1	33.0	1	100	0	66	0	0	0	100	0.00
4599631--4599678	24	1.9	26	83	8	64	52	2	2	43	1.24
4599650--4599749	42	2.5	38	78	16	103	51	4	3	42	1.36
4599650--4599753	40	2.5	42	79	11	117	50	3	2	42	1.35
4600613--4600681	32	2.1	33	91	2	113	23	5	14	56	1.60
4601822--4601872	12	4.1	13	80	16	63	41	0	0	58	0.98
4601825--4601872	18	2.6	18	80	3	60	41	0	0	58	0.98
4601989--4602018	13	2.3	13	94	0	51	56	0	6	36	1.26
4602007--4602095	35	2.5	35	80	8	92	56	0	1	42	1.06
4611949--4611979	3	10.3	3	100	0	62	32	0	0	67	0.91
4613528--4613554	3	9.0	3	100	0	54	33	0	0	66	0.92
4613732--4613771	19	2.0	20	85	4	55	32	10	2	55	1.47
4617539--4617814	101	2.8	100	87	3	376	45	8	8	37	1.65
4617539--4617836	102	3.0	99	83	4	359	45	8	9	37	1.66
4619564--4619612	24	2.1	24	85	11	66	32	6	14	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4619558--4619667	22	5.0	21	72	12	76	33	2	17	46	1.62
4619744--4619789	21	2.2	21	84	7	58	34	6	13	45	1.69
4620089--4620122	17	2.0	17	88	0	50	32	14	20	32	1.93
4621157--4621479	101	3.2	101	81	3	361	44	7	11	36	1.69
4624699--4624738	2	20.0	2	94	0	71	0	0	47	52	1.00
4629591--4629625	16	2.2	16	94	0	61	42	11	11	34	1.77
4634852--4634906	21	2.6	21	100	0	110	27	32	16	23	1.96
4636731--4636992	99	2.6	100	84	3	339	40	8	10	40	1.69
4637801--4637897	25	3.7	26	70	25	80	72	0	8	19	1.10
4637800--4637897	10	10.2	9	72	23	60	72	0	8	19	1.09
4637845--4637899	20	2.8	19	86	2	74	80	0	3	16	0.86
4637800--4637899	39	2.6	39	80	9	107	73	0	8	19	1.08
4637845--4637902	6	9.2	6	78	14	55	79	0	3	17	0.87
4637845--4637908	26	2.5	26	82	10	78	78	1	3	17	0.96
4637838--4637909	30	2.2	36	80	16	93	75	1	5	18	1.07
4638303--4638367	33	2.0	33	87	6	96	41	10	21	26	1.86
4638349--4638424	33	2.3	33	83	2	89	44	6	19	28	1.76
4643017--4643142	22	5.6	22	74	9	85	33	2	17	46	1.61
4643015--4643147	45	2.9	46	76	10	148	32	3	16	47	1.64
4643219--4643264	21	2.2	21	84	7	58	34	6	13	45	1.69
4643537--4643570	17	2.0	17	88	0	50	32	14	20	32	1.93
4644601--4644919	101	3.2	100	82	4	399	44	7	10	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4651742--4651770	13	2.2	13	100	0	58	44	6	20	27	1.77
4653034--4653064	16	1.9	16	93	0	53	41	6	16	35	1.74
4660153--4660414	99	2.6	100	83	4	314	40	6	11	41	1.66
4661222--4661346	57	2.2	57	83	8	155	68	3	9	18	1.30
4661222--4661300	15	5.1	15	72	24	58	70	0	8	20	1.13
4661712--4661811	33	3.0	33	85	0	101	40	10	21	29	1.85
4661717--4662079	66	5.5	65	71	11	202	41	11	19	26	1.86
4661818--4661893	33	2.4	33	80	4	93	46	11	18	23	1.82
4661832--4661912	33	2.4	35	78	12	89	39	14	19	25	1.90
4661922--4662073	34	4.6	34	74	8	125	42	13	18	25	1.86
4663213--4663237	10	2.5	10	100	0	50	84	0	8	8	0.79
4665102--4665395	99	2.9	99	83	5	344	39	6	10	42	1.66
4665224--4665421	99	2.0	100	84	4	258	41	8	8	41	1.65
4667667--4667746	24	3.3	24	78	13	101	36	8	2	52	1.46
4668968--4669089	19	6.4	19	79	4	120	20	8	26	45	1.79
4668943--4669089	38	3.8	38	82	1	132	20	7	26	45	1.77
4669368--4669397	7	4.1	7	95	4	51	30	0	3	66	1.07
4671618--4671662	10	4.6	10	84	13	58	6	2	6	84	0.85
4671618--4671678	31	2.0	29	84	6	77	8	6	4	80	1.02
4672310--4672431	22	5.6	22	72	9	88	25	17	22	35	1.95
4673403--4673483	24	3.4	23	76	10	83	7	23	0	69	1.14
4673960--4674014	22	2.4	23	85	8	69	9	9	0	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4675884--4675933	24	2.1	24	85	3	66	32	10	18	40	1.83
4676631--4676669	19	2.1	19	90	0	60	38	5	2	53	1.37
4678077--4678136	15	4.7	12	83	8	50	76	1	11	10	1.09
4678100--4678137	15	2.6	15	91	4	60	68	2	10	18	1.30
4679152--4679250	31	3.2	30	78	8	99	16	15	15	53	1.73
4679146--4679874	32	22.8	32	74	5	380	17	19	14	49	1.80
4679271--4679872	96	6.2	96	75	6	466	17	19	13	49	1.80
4681197--4681246	24	2.1	24	85	7	66	50	4	8	38	1.51
4681784--4681887	52	2.0	52	84	1	136	43	9	14	32	1.78
4684078--4684153	37	2.1	37	100	0	152	51	10	10	27	1.69
4685810--4685945	19	7.2	19	75	5	96	20	8	25	45	1.80
4685810--4685935	38	3.3	37	78	7	128	20	9	25	44	1.82
4685936--4685994	23	2.7	22	84	5	66	15	1	23	59	1.45
4685936--4685989	11	4.9	11	80	8	65	14	0	25	59	1.36
4688054--4688109	22	2.7	20	82	17	78	28	0	0	71	0.86
4689740--4689769	6	4.8	6	92	8	51	13	3	0	83	0.77
4689737--4689771	13	2.7	13	90	0	61	17	2	0	80	0.84
4692742--4693034	56	4.9	56	79	10	248	34	11	5	48	1.63
4693060--4693099	12	3.4	12	86	13	57	75	0	0	25	0.81
4694264--4694396	44	3.0	44	82	6	153	45	16	12	26	1.82
4694400--4694524	42	3.0	41	86	4	155	46	22	8	23	1.78
4694998--4695183	21	8.9	20	69	17	87	36	14	11	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4694958--4695116	79	2.0	80	90	1	248	34	17	11	35	1.87
4695079--4695772	46	14.9	46	76	11	478	37	12	10	39	1.78
4695167--4695942	21	32.8	26	65	22	196	37	13	10	39	1.78
4695076--4695960	72	12.6	72	74	12	471	37	12	10	38	1.78
4695076--4695682	118	5.2	118	89	1	893	37	12	10	39	1.78
4695404--4695960	210	2.6	210	89	1	808	38	13	10	37	1.79
4695380--4695890	118	4.4	117	84	7	414	37	14	9	38	1.79
4695216--4695960	46	15.9	46	79	10	413	37	13	10	38	1.79
4695196--4695942	164	4.5	164	83	6	888	37	13	10	39	1.79
4697119--4697221	8	12.0	8	78	20	102	9	16	0	73	1.08
4697108--4697247	27	5.2	25	76	16	97	8	18	0	72	1.09
4697120--4697220	18	5.3	18	71	24	57	8	15	0	75	1.04
4697119--4697254	46	3.1	44	83	15	133	8	17	0	73	1.08
4697110--4697254	35	4.0	35	76	19	129	8	17	0	73	1.07
4697139--4697241	18	5.8	18	81	16	76	6	18	0	74	1.03
4697120--4697251	8	15.0	8	76	17	68	7	18	0	74	1.05
4697119--4697251	16	7.5	18	78	13	93	8	18	0	73	1.07
4699269--4699325	27	2.2	26	87	3	78	63	0	0	36	0.95
4700341--4700378	19	2.1	18	90	5	58	26	0	2	71	1.00
4700343--4700391	8	5.6	8	83	11	53	18	0	4	77	0.92
4700459--4700501	3	14.3	3	100	0	86	65	0	0	34	0.93
4700500--4700536	3	12.3	3	100	0	74	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4701287--4701559	60	4.6	59	86	5	361	35	14	6	43	1.72
4701287--4701567	118	2.3	118	90	3	429	34	13	6	44	1.71
4702631--4702694	14	4.1	16	74	25	57	67	3	0	29	1.06
4702638--4702765	12	10.2	12	72	14	66	65	3	1	28	1.19
4702658--4702795	41	3.3	43	70	17	103	67	5	2	25	1.22
4702712--4702774	17	3.6	17	77	10	56	65	4	1	28	1.22
4702743--4702814	16	4.6	15	77	18	67	73	4	1	20	1.07
4703305--4703347	21	2.0	21	82	13	52	60	2	0	37	1.10
4705833--4706139	57	5.1	57	73	15	176	35	14	5	44	1.68
4706770--4706809	11	3.7	11	86	6	64	47	10	0	42	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91