genome.fa.s201.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  69  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11399577--11399618	12	3.7	12	78	9	52	61	2	0	35	1.09
11399601--11399643	14	3.0	15	84	15	56	62	6	0	30	1.21
11399606--11399659	15	3.6	14	82	10	54	61	9	1	27	1.37
11399597--11399662	29	2.3	27	76	16	62	63	7	1	27	1.30
11399635--11399689	20	2.7	21	82	5	67	61	5	1	30	1.29
11405592--11405644	27	1.9	28	85	11	74	30	7	11	50	1.65
11408910--11408969	22	2.5	24	86	7	79	65	5	3	26	1.29
11409948--11410061	57	2.0	57	96	0	210	28	14	16	40	1.88
11411685--11411749	30	2.3	27	82	10	78	78	9	10	1	1.03
11411685--11411746	26	2.4	25	84	10	79	77	9	11	1	1.06
11411685--11411777	29	3.2	29	74	7	82	76	9	11	2	1.11
11411703--11411777	32	2.5	31	79	12	77	77	9	10	2	1.09
11415365--11415446	29	2.9	29	85	8	98	23	0	26	50	1.50
11415387--11415528	35	4.0	36	72	9	103	23	1	27	47	1.60
11415365--11415439	14	5.3	13	79	6	60	21	0	28	50	1.49
11415423--11415495	22	3.4	22	77	3	78	20	1	28	49	1.57
11416203--11416242	11	3.6	11	86	0	53	47	0	20	32	1.50
11417713--11417856	49	2.9	49	88	1	198	45	11	11	31	1.76
11417838--11417872	16	2.2	16	100	0	70	48	5	5	40	1.51
11418098--11418147	12	3.8	13	80	14	59	0	0	18	82	0.68
11421398--11421433	19	1.9	19	88	5	56	8	8	2	80	0.99
11422079--11422121	21	1.9	24	86	13	65	2	16	2	79	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11422717--11422861	37	3.9	36	77	11	132	38	6	19	35	1.78
11422871--11423087	37	5.9	37	72	7	163	35	10	17	37	1.84
11425097--11425186	14	6.3	13	71	13	54	25	1	30	43	1.62
11425097--11425180	22	3.9	21	80	10	98	25	1	30	42	1.62
11429792--11430011	83	2.6	83	76	5	219	34	15	12	37	1.85
11449880--11449908	15	1.9	15	100	0	58	51	13	20	13	1.75
11451062--11451158	28	3.2	28	64	20	70	55	15	9	19	1.67
11451048--11451174	62	2.0	62	96	0	236	55	14	11	19	1.69
11453267--11453297	3	10.3	3	100	0	62	67	0	0	32	0.91
11454091--11454538	238	1.9	238	90	0	725	26	23	21	27	1.99
11483793--11483855	28	2.2	28	100	0	126	33	11	9	46	1.72
11494256--11494345	28	3.4	25	74	14	76	40	4	11	44	1.60
11494510--11494535	12	2.2	12	100	0	52	61	0	0	38	0.96
11498353--11498379	2	13.5	2	100	0	54	51	0	0	48	1.00
11503424--11503492	16	4.5	16	74	15	65	53	1	0	44	1.09
11510532--11510590	26	2.3	26	80	11	68	69	1	1	27	1.07
11511791--11511905	55	2.1	55	86	1	160	53	1	1	43	1.21
11512008--11512032	7	3.6	7	100	0	50	88	0	0	12	0.53
11513169--11513201	2	16.5	2	93	0	57	48	0	3	48	1.17
11519190--11519323	44	3.0	44	68	23	136	34	4	9	51	1.55
11519190--11519369	88	2.0	88	100	0	360	35	3	10	51	1.52
11519229--11519367	44	3.2	44	70	22	146	37	2	10	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11519592--11519617	2	13.0	2	100	0	52	50	0	0	50	1.00
11520253--11520304	14	3.8	14	78	12	54	48	1	1	48	1.24
11520518--11520559	20	2.3	19	80	15	52	42	7	0	50	1.30
11521387--11521416	13	2.2	14	94	5	53	43	13	10	33	1.77
11521943--11521998	28	2.0	28	100	0	112	14	14	21	50	1.78
11522363--11522394	2	16.0	2	93	0	55	46	0	3	50	1.17
11522920--11522948	14	2.1	14	100	0	58	51	0	0	48	1.00
11525598--11525628	14	2.2	14	94	0	53	51	0	3	45	1.17
11525861--11525904	19	2.4	19	82	14	56	45	2	0	52	1.13
11526056--11526109	24	2.2	26	84	15	80	55	0	11	33	1.35
11526057--11526109	23	2.2	25	86	6	83	56	0	11	32	1.35
11526170--11526215	20	2.3	20	88	0	65	41	0	10	47	1.38
11526882--11526916	18	2.0	18	94	5	63	25	5	0	68	1.11
11533921--11533955	17	2.0	18	94	5	63	28	11	0	60	1.32
11534056--11534098	16	2.7	15	82	10	50	58	2	0	39	1.11
11534056--11534098	5	8.2	5	84	5	50	58	2	0	39	1.11
11535199--11535307	21	5.2	21	69	8	69	50	9	4	35	1.55
11538910--11538957	15	3.0	16	79	14	55	31	0	0	68	0.90
11538910--11538960	25	2.0	26	85	11	70	31	0	0	68	0.90
11540653--11540682	2	15.0	2	92	0	51	53	0	0	46	1.00
11542879--11542990	51	2.2	51	86	0	161	38	6	12	42	1.68
11544796--11544835	19	2.1	19	90	0	62	50	12	25	12	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11545906--11546034	65	2.0	65	96	3	242	36	25	12	25	1.91
11553551--11553625	36	2.1	36	92	0	123	26	26	14	32	1.95
11567791--11567821	2	15.5	2	93	0	53	54	0	0	45	0.99
11567788--11567830	10	4.1	10	85	11	59	53	0	0	46	1.00
11567964--11568004	23	1.9	20	85	14	55	41	0	0	58	0.98
11568185--11568485	103	2.9	103	91	1	478	31	13	11	43	1.81
11570948--11571020	36	2.0	36	94	0	128	34	1	8	56	1.38
11570948--11571006	20	3.2	20	65	18	54	35	1	8	54	1.41
11570953--11571034	36	2.3	36	87	4	112	37	2	4	54	1.35
11582151--11582216	33	2.0	33	97	2	125	43	15	6	34	1.71
11582361--11582498	50	2.7	53	77	11	146	27	15	9	47	1.76
11583795--11583828	2	17.0	2	100	0	68	50	0	0	50	1.00
11585577--11585680	53	2.0	53	92	0	172	36	9	24	29	1.87
11585712--11585847	70	1.9	70	92	0	227	40	12	13	33	1.82
11591430--11591479	24	2.1	23	82	10	57	52	2	8	38	1.43
11591823--11591867	20	2.2	20	84	11	56	48	2	0	48	1.13
11596275--11596300	8	3.2	8	100	0	52	76	0	0	23	0.78
11605466--11605497	14	2.2	15	94	5	57	53	3	0	43	1.16
11605814--11605858	17	2.6	17	92	0	72	48	0	0	51	1.00
11606053--11606095	20	2.2	20	87	4	61	39	0	9	51	1.34
11608976--11609036	10	5.5	11	75	14	54	47	1	1	49	1.21
11609123--11609168	22	2.2	21	85	11	60	60	0	2	36	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11609309--11609365	24	2.3	26	82	14	75	50	1	3	43	1.29
11609274--11609387	58	2.0	58	81	6	133	54	3	2	39	1.31
11609424--11609485	10	6.2	10	74	12	56	54	0	3	41	1.16
11609612--11609675	18	3.4	18	70	19	58	53	0	3	43	1.16
11609614--11609690	39	2.0	39	86	0	109	51	0	3	44	1.19
11609554--11609789	99	2.4	99	80	7	253	49	3	2	43	1.35
11609732--11609790	20	2.9	21	84	5	75	47	1	1	49	1.21
11609732--11609798	21	3.2	21	82	4	64	47	1	4	46	1.31
11609757--11609841	14	5.8	16	68	22	53	43	1	2	52	1.21
11609758--11609841	38	2.3	35	84	12	107	44	1	2	52	1.21
11609795--11609840	21	2.0	24	88	12	71	41	0	0	58	0.98
11609808--11609881	33	2.3	31	83	6	85	36	2	1	59	1.20
11619272--11619321	24	2.1	23	82	10	57	52	2	8	38	1.43
11619786--11619856	37	2.0	36	89	10	110	43	14	2	39	1.59
11623947--11623972	8	3.2	8	100	0	52	76	0	0	23	0.78
11625339--11625582	119	2.1	119	98	0	470	21	27	23	27	1.99
11627201--11627242	22	1.9	22	90	0	66	54	2	11	30	1.49
11627173--11627267	50	1.9	50	86	4	138	51	6	12	29	1.64
11633825--11633914	27	3.2	27	63	22	67	42	8	13	35	1.75
11633817--11634028	115	1.9	114	86	3	309	42	7	11	38	1.69
11633817--11634028	57	3.7	57	87	3	284	42	7	11	38	1.69
11635317--11635368	17	3.2	16	82	17	63	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11635324--11635374	26	1.9	27	84	4	68	41	0	0	58	0.98
11635965--11636241	150	1.8	150	96	0	509	41	8	12	37	1.74
11635991--11636284	150	1.9	147	88	4	390	41	9	11	37	1.75
11636215--11636349	51	2.6	51	83	5	184	39	13	10	37	1.79
11636537--11636585	18	2.6	19	87	9	73	48	0	2	48	1.12
11638367--11638560	22	8.9	22	68	8	83	36	7	6	49	1.57
11638470--11638605	66	2.1	65	83	4	166	35	6	7	50	1.56
11638535--11638638	44	2.4	45	75	10	112	36	6	6	50	1.55
11638619--11638726	22	4.9	22	75	4	101	43	12	2	40	1.58
11638619--11638726	44	2.4	44	78	4	119	43	12	2	40	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91