genome.fa.s201.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  29  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5058367--5058551	95	2.0	94	86	4	257	30	14	17	38	1.89
5058347--5058592	135	1.8	135	85	1	350	28	15	18	38	1.90
5059373--5059421	21	2.2	21	85	7	62	61	0	38	0	0.96
5059379--5059411	17	1.9	17	88	11	50	60	0	39	0	0.97
5059660--5059729	11	6.6	11	66	21	51	17	1	8	72	1.16
5067481--5067511	7	4.6	7	92	8	55	74	0	0	25	0.82
5069349--5069425	22	3.6	21	78	7	66	32	9	14	44	1.76
5071122--5071148	14	1.9	14	100	0	54	37	22	14	25	1.93
5071816--5071900	44	1.9	44	83	4	109	38	11	8	41	1.72
5071844--5071900	22	2.6	23	77	8	64	40	14	5	40	1.68
5072233--5072290	21	2.7	21	83	2	71	58	18	6	15	1.59
5074410--5074442	12	2.5	13	85	14	50	21	0	33	45	1.52
5074409--5074450	19	2.2	19	83	8	50	19	2	33	45	1.63
5077474--5077552	29	2.6	31	75	18	85	46	0	3	49	1.19
5078984--5079142	87	1.8	87	81	5	196	64	15	1	18	1.36
5084509--5084545	2	18.5	2	100	0	74	51	0	48	0	1.00
5086406--5086439	2	17.0	2	100	0	68	50	0	0	50	1.00
5087019--5087063	3	15.0	3	95	0	81	31	0	2	66	1.04
5090312--5090344	11	3.0	11	86	13	50	27	0	15	57	1.38
5091165--5091240	34	2.2	33	79	6	80	38	13	14	34	1.85
5092691--5092779	20	4.4	20	70	10	58	50	3	2	43	1.31
5093916--5093979	9	6.8	9	82	7	56	54	3	1	40	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5093947--5093980	10	3.4	10	95	0	59	47	5	0	47	1.26
5097340--5097367	5	5.6	5	100	0	56	17	0	0	82	0.68
5098004--5098053	21	2.4	21	82	0	64	20	4	28	48	1.67
5099690--5099865	62	2.8	64	75	8	164	42	12	9	35	1.76
5099858--5099994	73	1.9	73	81	3	168	34	13	6	45	1.70
5099876--5100417	127	4.2	128	80	4	539	35	13	9	42	1.76
5100235--5100416	67	2.9	59	73	18	170	33	12	10	43	1.77
5100180--5100376	67	3.0	66	73	18	205	29	15	11	43	1.81
5099918--5100493	127	4.5	125	78	7	532	35	13	9	42	1.76
5112410--5112434	7	3.6	7	100	0	50	72	0	0	28	0.86
5112678--5112993	44	7.2	44	83	4	327	43	16	13	25	1.85
5112648--5112993	88	3.9	87	85	4	412	43	17	14	25	1.86
5112657--5112993	132	2.5	131	83	4	428	43	17	14	25	1.86
5113156--5113196	21	2.0	21	85	0	55	36	14	12	36	1.84
5113318--5113403	44	2.0	44	81	6	104	41	13	8	36	1.75
5113484--5113567	21	4.0	21	87	3	123	41	13	9	35	1.76
5113936--5114128	79	2.4	79	84	0	251	30	26	7	36	1.83
5114663--5114724	25	2.5	24	80	12	65	8	17	0	74	1.06
5114672--5114829	16	10.3	15	76	19	93	8	12	1	77	1.06
5114679--5114829	8	19.5	8	77	18	78	9	12	1	76	1.07
5115173--5115225	14	3.7	14	78	12	54	3	9	5	81	0.98
5121656--5121694	18	2.2	18	86	9	53	48	12	30	7	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5122449--5122721	60	4.5	59	77	11	221	44	5	10	39	1.61
5122591--5122728	59	2.4	59	87	2	208	45	6	10	36	1.65
5124473--5124559	42	2.1	42	93	0	147	27	10	20	41	1.85
5126162--5126195	18	1.9	17	88	5	50	52	17	23	5	1.66
5126579--5126621	19	2.3	19	84	8	52	69	2	11	16	1.28
5127362--5127405	10	4.5	10	85	2	63	0	36	0	63	0.95
5132128--5132242	47	2.4	51	78	17	129	49	8	16	25	1.74
5132711--5132795	31	2.7	31	91	5	136	31	21	21	25	1.98
5132808--5132865	25	2.3	25	82	5	73	44	3	27	24	1.69
5133106--5133136	11	2.8	11	100	0	62	19	0	29	51	1.47
5133161--5133317	52	3.0	52	88	1	217	41	8	23	26	1.83
5136283--5136359	41	1.9	40	84	7	102	41	5	1	51	1.32
5136607--5136781	76	2.3	76	84	2	235	42	6	19	31	1.77
5156336--5156628	105	2.8	105	78	5	317	48	12	10	28	1.75
5163301--5163625	143	2.3	145	80	9	355	34	10	13	41	1.79
5165142--5165179	13	2.7	15	84	12	53	21	5	13	60	1.52
5165234--5165281	7	6.9	7	79	9	53	41	27	4	27	1.74
5165225--5165302	28	2.8	26	79	12	84	43	26	2	26	1.68
5165247--5165291	21	2.2	20	84	11	56	48	22	2	26	1.62
5166519--5166557	2	20.0	2	94	5	71	48	0	0	51	1.00
5168942--5169013	23	3.0	23	76	11	81	31	8	9	50	1.65
5172131--5172418	122	2.4	121	81	7	325	33	14	14	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5177103--5177134	6	5.5	6	92	7	57	0	15	15	68	1.21
5177103--5177134	11	2.8	12	90	9	57	0	15	15	68	1.21
5179757--5179804	17	2.9	16	78	6	51	33	2	0	64	1.05
5179795--5179844	20	2.5	20	90	3	73	48	0	0	52	1.00
5182507--5182551	23	2.0	22	83	12	56	42	6	0	51	1.28
5182549--5182600	17	3.2	16	81	15	63	1	19	0	78	0.84
5182555--5182600	14	3.0	15	87	12	67	2	19	0	78	0.86
5182549--5182597	23	2.1	23	85	7	64	2	18	0	79	0.83
5182722--5182770	23	2.2	22	85	10	64	57	6	6	30	1.48
5187595--5187678	22	3.8	22	77	3	80	39	9	7	44	1.65
5187593--5188046	44	10.2	44	70	13	173	37	8	7	46	1.63
5187670--5187729	31	2.0	31	86	3	86	35	5	15	45	1.68
5187756--5188045	22	13.3	22	75	9	202	37	8	6	47	1.60
5187985--5188064	22	3.6	21	75	14	63	32	6	6	55	1.50
5187984--5188078	45	2.1	44	84	1	118	31	7	7	53	1.56
5188306--5188602	22	13.5	22	75	5	161	38	6	9	45	1.64
5188340--5188598	44	5.9	44	77	5	193	37	6	10	46	1.63
5188370--5188607	66	3.6	66	77	2	194	39	6	9	44	1.63
5188611--5188826	22	9.8	22	74	10	111	37	7	5	50	1.54
5188647--5188775	21	5.9	22	74	13	104	35	6	5	52	1.49
5188644--5188775	43	3.0	42	79	11	122	37	6	5	51	1.49
5188644--5188826	90	2.1	88	80	6	210	37	6	5	50	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5188668--5188987	44	7.3	43	73	9	193	35	7	5	51	1.54
5188810--5188977	22	7.8	22	74	9	130	36	8	4	51	1.52
5188677--5189007	65	5.1	66	73	10	227	35	8	5	50	1.55
5188809--5188987	43	4.2	45	72	11	142	35	8	5	50	1.56
5189041--5189128	44	1.9	44	81	6	104	38	7	4	48	1.53
5189147--5189236	43	2.1	41	84	11	112	33	6	7	52	1.56
5189246--5189346	22	4.6	22	75	7	89	39	9	4	45	1.59
5189264--5189367	44	2.4	44	80	4	113	37	9	6	46	1.63
5189292--5189355	22	2.9	21	77	9	65	39	9	4	46	1.57
5189305--5189377	22	3.5	20	76	12	56	36	9	8	45	1.67
5189389--5189462	14	5.4	14	72	15	55	44	6	1	47	1.38
5189393--5189448	19	3.2	18	75	17	64	44	7	1	46	1.41
5201302--5201350	13	3.8	13	89	5	55	16	4	34	44	1.66
5201309--5201351	13	3.4	13	90	6	61	18	4	32	44	1.71
5201302--5201362	25	2.4	24	76	10	59	16	3	32	47	1.63
5201365--5201402	17	2.2	18	95	4	69	18	10	34	36	1.85
5204225--5204283	31	1.9	31	92	0	100	32	5	22	40	1.75
5205877--5205914	18	2.2	17	86	13	51	81	2	5	10	0.94
5207116--5207303	51	3.6	51	75	9	186	35	14	12	37	1.84
5209395--5209438	21	2.1	21	100	0	88	50	13	9	27	1.72
5209466--5209541	19	4.1	19	68	11	50	39	35	2	22	1.68
5209560--5209619	25	2.5	24	81	5	66	38	36	6	18	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5210773--5210813	2	20.5	2	85	9	57	48	0	4	46	1.23
5212796--5212837	22	2.0	22	90	4	68	33	26	0	40	1.56
5213756--5213822	34	2.0	34	84	0	89	43	14	13	28	1.84
5214736--5215006	141	1.9	139	83	7	343	40	8	7	43	1.62
5217078--5217131	25	2.2	25	83	6	65	24	7	1	66	1.27
5217802--5217847	12	4.1	11	78	21	51	43	0	0	56	0.99
5223674--5223735	20	3.1	20	88	0	88	25	12	20	40	1.89
5224065--5224144	40	2.0	40	90	0	124	35	22	5	37	1.76
5229953--5229999	23	2.0	23	88	8	69	46	17	10	25	1.79
5230085--5230167	33	2.5	33	84	3	105	25	18	9	46	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91