genome.fa.s201.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  25  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4458371--4458687	18	17.9	18	67	11	136	29	13	10	46	1.77
4458371--4458683	36	8.8	36	72	8	178	29	14	10	46	1.77
4458371--4458633	54	5.0	54	75	6	169	30	14	10	45	1.78
4458447--4458645	103	1.9	103	82	4	249	30	12	10	46	1.76
4458655--4458696	18	2.5	17	88	7	59	23	11	11	52	1.71
4458783--4458825	18	2.4	18	88	0	59	27	6	9	55	1.57
4461998--4462038	17	2.4	16	84	11	55	48	4	0	46	1.23
4465130--4465167	20	1.9	20	84	10	51	28	2	5	63	1.30
4465506--4465531	13	2.0	13	100	0	52	53	0	0	46	1.00
4466015--4466039	13	1.9	13	100	0	50	40	0	0	60	0.97
4466081--4466163	29	2.9	27	76	18	78	55	0	2	42	1.13
4466085--4466169	28	2.9	29	75	16	77	56	0	2	41	1.12
4466631--4466685	25	2.2	24	75	12	58	47	3	1	47	1.30
4466639--4466684	25	1.9	23	86	8	65	52	4	2	41	1.33
4466728--4466774	20	2.4	20	85	3	60	34	4	0	61	1.15
4479088--4479332	75	3.1	80	82	10	333	42	33	4	20	1.71
4484054--4484110	7	8.0	7	82	9	62	82	5	12	0	0.82
4484056--4484110	25	2.2	25	90	3	83	83	5	10	0	0.79
4485564--4485602	21	1.9	20	84	5	51	43	5	5	46	1.48
4485595--4485638	21	2.2	20	83	4	52	40	2	4	52	1.34
4486338--4486368	15	2.1	15	93	0	53	25	9	0	64	1.24
4490619--4491169	22	24.8	22	68	12	173	50	6	8	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4490662--4490898	88	2.7	83	74	7	204	52	6	7	33	1.54
4490990--4491173	87	2.1	87	80	2	208	47	7	9	35	1.63
4490990--4491172	43	4.2	43	75	6	145	47	7	9	36	1.63
4491269--4491320	22	2.4	22	84	12	79	42	5	15	36	1.71
4491280--4491384	22	4.8	21	75	5	68	49	4	9	36	1.56
4491420--4491593	22	8.2	21	70	13	72	47	9	5	38	1.58
4491551--4491640	22	4.1	22	78	5	94	46	6	7	38	1.59
4491557--4491639	43	1.9	43	85	4	114	46	7	7	38	1.59
4492028--4492179	22	7.0	22	65	14	82	48	4	9	36	1.57
4492269--4492342	22	3.4	22	78	12	80	54	5	8	32	1.53
4492378--4492502	22	5.8	22	72	10	80	52	5	4	38	1.44
4492375--4492526	65	2.3	65	80	2	162	50	5	5	38	1.49
4492378--4492526	43	3.4	43	77	9	142	50	5	5	38	1.48
4492426--4492548	22	5.6	22	75	1	95	48	4	7	39	1.52
4492378--4492548	87	2.0	87	81	6	204	50	5	5	38	1.51
4492517--4492572	22	2.5	22	82	0	67	50	10	8	30	1.68
4492825--4492864	21	2.0	20	85	5	53	52	10	5	32	1.56
4492979--4493034	21	2.6	21	81	13	69	48	12	7	32	1.68
4492991--4493044	21	2.6	21	91	2	83	48	11	5	35	1.62
4497411--4497435	12	2.1	12	100	0	50	48	8	8	36	1.62
4502408--4502463	28	2.0	28	96	0	103	42	8	26	21	1.82
4507897--4507990	37	2.6	37	77	1	91	53	4	0	42	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4508188--4508236	17	2.8	18	87	9	66	30	10	10	48	1.70
4510145--4510185	21	1.9	21	85	5	55	31	7	7	53	1.56
4510510--4510542	12	2.8	12	86	13	50	69	12	0	18	1.18
4514405--4514430	12	2.2	12	100	0	52	57	0	0	42	0.98
4514787--4514820	13	2.7	12	90	9	50	61	0	0	38	0.96
4515221--4515258	18	2.1	19	90	5	60	65	0	0	34	0.93
4516132--4516163	12	2.7	12	90	0	55	90	9	0	0	0.45
4516131--4516169	21	1.9	20	89	5	60	89	7	2	0	0.56
4519054--4519079	6	4.3	6	100	0	52	15	0	0	84	0.62
4521168--4521206	19	2.0	21	90	10	64	0	17	0	82	0.68
4522938--4522970	15	2.2	15	94	0	57	45	9	18	27	1.79
4530533--4530573	16	2.5	17	77	22	52	14	19	0	65	1.26
4534865--4534992	66	1.9	66	91	0	211	27	9	22	40	1.84
4534931--4535356	48	8.8	48	78	8	378	28	11	20	39	1.87
4534931--4535356	98	4.4	96	79	7	423	28	11	20	39	1.87
4534931--4535345	146	2.8	146	81	5	500	28	11	20	39	1.87
4535332--4535455	44	2.8	44	81	6	153	31	18	15	34	1.92
4535610--4535654	18	2.5	19	82	10	58	13	2	2	82	0.86
4538347--4538399	16	3.4	16	81	2	63	47	28	3	20	1.68
4540980--4541014	3	11.7	3	100	0	70	34	0	0	65	0.93
4543638--4543697	16	3.7	16	75	20	54	78	6	0	15	0.95
4543640--4543723	21	3.9	21	80	7	80	77	4	3	14	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4543803--4543847	15	2.9	15	81	15	56	60	2	0	37	1.09
4544681--4544706	7	3.7	7	100	0	52	84	0	0	15	0.62
4545890--4545930	12	3.5	12	87	9	50	80	2	17	0	0.82
4545885--4545943	16	3.7	16	75	18	52	79	5	15	0	0.89
4550055--4550195	70	2.0	70	94	0	246	24	14	19	41	1.89
4550742--4550830	32	2.8	32	84	6	108	44	25	0	29	1.54
4551592--4551644	22	2.3	23	83	6	72	54	0	41	3	1.18
4554867--4554912	23	2.0	23	91	0	74	50	4	4	41	1.42
4555167--4555209	16	2.7	15	86	10	59	30	9	6	53	1.59
4555593--4555641	25	1.9	25	87	4	71	51	4	18	26	1.64
4559756--4559780	5	5.0	5	100	0	50	40	0	0	60	0.97
4560071--4560156	21	4.2	20	73	7	73	32	5	13	47	1.67
4560126--4560173	21	2.3	21	77	0	51	41	2	10	45	1.50
4560193--4560242	20	2.4	22	83	16	70	36	4	8	52	1.50
4560471--4560562	22	4.1	22	75	9	80	40	6	6	46	1.56
4560471--4560567	44	2.2	45	83	5	117	41	7	6	45	1.57
4560568--4561061	22	22.4	22	70	7	171	36	10	4	47	1.59
4560710--4560803	43	2.2	44	84	1	118	40	9	3	46	1.52
4560728--4560909	90	2.0	90	82	2	222	35	7	4	51	1.52
4561357--4561489	22	6.1	22	70	10	76	36	8	8	46	1.64
4561417--4561509	44	2.1	44	82	7	109	39	7	7	45	1.61
4561429--4561509	22	3.7	22	74	12	67	41	6	7	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4561417--4561601	96	1.9	96	80	4	212	38	7	7	45	1.61
4561528--4561631	22	4.9	22	77	12	101	35	9	5	49	1.60
4561526--4561647	22	6.1	19	76	16	72	36	8	4	50	1.54
4561581--4561617	19	2.0	19	89	5	58	37	13	2	45	1.58
4561641--4561701	26	2.3	26	76	15	63	36	1	3	59	1.24
4561766--4562045	22	13.0	22	71	10	132	37	10	5	46	1.61
4561762--4561916	65	2.4	66	76	10	156	36	9	8	46	1.66
4561878--4561929	11	4.7	11	75	15	54	36	5	1	55	1.35
4562205--4562261	22	2.6	22	83	2	62	42	7	5	45	1.53
4565121--4565152	8	4.1	8	92	8	57	87	0	0	12	0.54
4565125--4565168	7	6.1	7	89	5	61	86	0	4	9	0.70
4565121--4565168	15	3.3	15	85	5	71	85	0	4	10	0.73
4570037--4570096	9	6.2	10	78	21	65	83	0	6	10	0.81
4571078--4571123	20	2.2	20	84	3	56	36	15	10	36	1.82
4571178--4571232	21	2.6	21	82	2	65	38	7	18	36	1.78
4571260--4571331	21	3.5	21	86	1	110	38	12	13	34	1.83
4571178--4571410	100	2.3	100	86	0	313	40	11	15	33	1.82
4571275--4571466	79	2.4	79	84	0	240	39	11	16	32	1.85
4571801--4571929	42	3.1	42	84	7	149	24	11	18	44	1.83
4580108--4580156	19	2.5	20	76	3	64	83	12	0	4	0.77
4580918--4580979	27	2.4	26	78	5	72	77	0	16	6	0.97
4582987--4583143	36	4.3	36	69	11	104	16	16	14	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4583132--4583257	38	3.5	37	76	12	111	17	13	12	56	1.67
4583132--4583221	36	2.5	35	82	12	101	15	13	14	56	1.67
4583194--4583292	35	2.7	35	78	4	90	19	14	12	54	1.70
4583279--4583351	34	2.1	34	84	0	92	20	15	10	53	1.71
4583421--4583583	35	4.6	35	70	13	102	22	20	11	45	1.83
4583415--4583752	70	4.8	71	71	12	194	21	20	11	45	1.83
4583415--4583945	211	2.5	211	79	5	522	22	20	10	47	1.80
4583862--4583951	34	2.6	34	77	15	94	25	20	5	48	1.70
4584117--4584204	35	2.5	35	81	0	86	21	14	15	47	1.82
4585115--4585455	145	2.4	145	82	2	389	35	15	8	40	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91