genome.fa.s201.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  77  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12755441--12755505	31	2.1	31	91	0	103	23	30	6	40	1.79
12756016--12756058	21	2.1	20	91	4	68	46	25	13	13	1.81
12759378--12759414	19	1.9	19	94	0	65	21	8	21	48	1.76
12764968--12764999	14	2.4	14	90	10	50	28	0	0	71	0.86
12765452--12765638	101	1.9	99	89	2	293	49	6	10	33	1.62
12765752--12765814	32	2.0	32	90	0	99	46	1	9	42	1.46
12766100--12766140	2	20.5	2	84	0	55	46	2	2	48	1.28
12768145--12768201	3	19.0	3	100	0	114	33	0	0	66	0.92
12768820--12768853	2	17.0	2	100	0	68	50	0	0	50	1.00
12772074--12772107	9	3.8	9	84	0	50	55	2	0	41	1.15
12772270--12772321	20	2.8	17	80	13	59	50	3	0	46	1.20
12780106--12780149	21	2.2	20	87	4	61	15	13	22	47	1.81
12782439--12782483	20	2.4	18	82	17	56	37	6	4	51	1.49
12782514--12782553	19	2.1	18	86	13	53	37	0	0	62	0.95
12783331--12783394	29	2.3	27	86	8	83	40	0	1	57	1.08
12783323--12783394	28	2.6	28	82	8	85	44	0	1	54	1.08
12785774--12785804	2	15.5	2	93	0	53	51	0	0	48	1.00
12786512--12786568	27	2.1	27	81	12	64	54	0	0	45	0.99
12787071--12787115	18	2.6	18	89	3	65	82	2	4	11	0.91
12806619--12806682	32	2.0	32	93	0	110	40	9	4	45	1.57
12807434--12807475	21	2.0	21	81	9	50	45	2	4	47	1.36
12808286--12808319	15	2.4	14	85	9	50	26	11	5	55	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12808675--12808788	49	2.4	48	82	8	137	50	5	7	36	1.54
12813572--12813606	2	17.5	2	100	0	70	51	0	0	48	1.00
12819293--12819324	2	16.0	2	100	0	64	50	0	0	50	1.00
12829252--12829788	167	3.2	166	86	4	744	39	15	14	30	1.87
12830255--12830330	35	2.2	37	79	13	90	43	1	0	55	1.08
12831990--12832033	23	2.0	23	90	4	72	47	4	34	13	1.63
12837135--12837187	26	2.1	24	83	13	63	50	5	0	43	1.25
12837622--12838223	168	3.6	163	77	10	592	39	13	14	32	1.86
12847202--12847272	35	2.0	36	88	2	108	42	5	2	49	1.41
12848101--12848133	12	2.7	12	95	4	57	45	0	6	48	1.27
12852506--12852565	29	2.0	31	84	12	81	48	1	3	46	1.28
12852598--12852661	29	2.2	28	84	13	78	56	1	0	42	1.09
12852598--12852661	28	2.3	27	84	13	76	56	1	0	42	1.09
12852637--12852680	19	2.3	19	81	11	54	47	0	0	52	1.00
12852650--12852697	20	2.6	17	81	18	53	47	2	0	50	1.12
12857598--12857642	11	3.9	11	85	8	54	20	2	2	75	1.01
12858164--12858207	14	3.3	14	78	12	56	43	0	0	56	0.99
12858452--12858494	21	2.0	21	82	8	52	39	0	2	58	1.11
12858879--12858917	2	20.0	2	89	5	53	51	5	0	43	1.24
12860217--12860280	27	2.2	29	81	15	80	51	0	0	48	1.00
12861304--12861340	3	12.3	3	100	0	74	0	32	0	67	0.91
12865549--12865635	44	1.9	46	86	4	124	14	17	9	58	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12866301--12866344	22	2.0	22	86	0	61	34	11	9	45	1.72
12874973--12875000	2	14.0	2	100	0	56	50	0	0	50	1.00
12875116--12875262	76	1.9	76	90	0	231	23	21	16	38	1.92
12879043--12879081	14	2.7	15	80	8	53	17	12	20	48	1.80
12879711--12879752	19	2.2	19	83	8	50	11	7	4	76	1.15
12879928--12879965	20	1.9	19	89	5	58	50	0	5	44	1.24
12880874--12880898	12	2.1	12	100	0	50	60	0	0	40	0.97
12881062--12881112	2	26.0	2	88	4	77	47	1	0	50	1.12
12881895--12881968	26	3.2	23	70	20	64	59	0	0	40	0.97
12882759--12882846	42	2.1	42	97	0	167	22	19	10	47	1.79
12882608--12883015	211	1.9	212	94	0	728	29	17	13	39	1.88
12882801--12883108	169	1.8	169	94	0	553	31	17	14	36	1.90
12883655--12883689	3	11.7	3	100	0	70	34	0	0	65	0.93
12893455--12893753	150	2.0	149	90	4	469	29	15	12	42	1.83
12911492--12911844	60	6.0	58	78	7	311	34	11	7	46	1.69
12911539--12911844	60	5.2	59	79	7	325	34	10	7	47	1.67
12911538--12911849	119	2.6	120	83	6	368	35	10	7	46	1.67
12917471--12917525	3	18.0	3	92	3	92	63	0	1	34	1.05
12918049--12918152	34	3.1	34	71	10	97	36	12	14	36	1.84
12918907--12918963	24	2.4	23	77	5	69	56	3	1	38	1.27
12919483--12919517	16	2.2	16	89	0	52	54	5	0	40	1.24
12919762--12919947	92	2.0	92	98	1	363	39	9	9	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12920047--12920231	100	1.9	98	92	4	309	31	9	8	51	1.63
12933626--12933656	4	7.8	4	92	0	53	25	0	25	48	1.52
12941960--12942339	169	2.2	168	91	2	609	38	14	15	31	1.88
12951863--12951904	3	14.0	3	100	0	84	66	0	0	33	0.92
12952412--12952497	34	2.5	34	78	0	91	36	15	16	32	1.90
12954198--12954260	32	2.0	32	90	0	99	42	9	3	44	1.52
12954374--12954559	99	1.9	99	86	3	259	33	9	6	50	1.61
12960547--12960583	19	1.9	19	94	0	65	48	21	8	21	1.76
12963904--12963946	21	2.1	20	91	4	68	13	13	25	46	1.81
12964457--12964521	31	2.1	31	94	0	112	41	6	29	23	1.78
12977242--12977274	12	2.8	12	100	0	66	69	0	0	30	0.88
12979430--12979889	239	1.9	238	88	5	705	37	7	4	50	1.51
12979685--12980090	195	2.0	202	88	7	616	34	5	4	54	1.46
12979918--12980247	167	2.0	167	83	9	426	34	5	6	53	1.50
12983228--12983292	31	2.1	31	91	0	103	23	30	6	40	1.79
12983802--12983844	21	2.1	20	91	4	68	46	25	13	13	1.81
12987135--12987171	19	1.9	19	94	0	65	21	8	21	48	1.76
12992707--12992737	13	2.5	13	94	5	55	29	0	0	70	0.87
12993192--12993376	99	1.9	99	85	3	257	49	7	9	33	1.63
12993490--12993552	32	2.0	32	87	0	90	44	3	11	41	1.56
12993840--12993872	10	3.3	10	95	0	57	39	0	3	57	1.14
12994428--12994488	24	2.7	23	80	7	70	37	1	6	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12995860--12995896	3	12.3	3	100	0	74	32	0	0	67	0.91
12997180--12997220	21	2.0	21	95	0	73	36	0	21	41	1.54
13001338--13001392	21	2.4	24	75	22	64	21	3	5	69	1.25
13001895--13001940	20	2.3	20	88	3	67	19	28	21	30	1.98
13003941--13004283	61	5.7	59	84	9	437	44	8	13	34	1.74
13003941--13004278	119	2.8	122	88	7	462	44	7	13	34	1.73
13003941--13004283	181	1.9	181	89	4	532	44	8	13	34	1.74
13008166--13008205	8	4.9	8	90	3	62	85	0	15	0	0.61
13008166--13008202	9	4.3	9	83	13	51	86	0	13	0	0.57
13008166--13008222	20	3.1	18	80	14	64	80	0	17	1	0.79
13009404--13009735	42	8.1	41	86	7	428	22	18	23	35	1.96
13009404--13009735	83	4.1	82	85	6	426	22	18	23	35	1.96
13009404--13009735	120	2.7	121	86	8	447	22	18	23	35	1.96
13009742--13009891	1	150.0	1	71	0	93	84	8	0	6	0.77
13009741--13009882	8	17.0	8	76	17	121	83	9	0	6	0.80
13009742--13009891	9	16.7	9	76	17	109	84	8	0	6	0.77
13009742--13009891	17	8.9	17	79	8	128	84	8	0	6	0.77
13010250--13010301	20	2.3	24	75	18	58	23	3	5	67	1.29
13010820--13010865	20	2.3	20	85	3	67	19	28	21	30	1.98
13012866--13013209	61	5.7	59	84	9	430	44	8	13	34	1.74
13012866--13013209	182	1.9	182	89	4	534	44	8	13	34	1.74
13018269--13018623	170	2.0	181	84	10	470	29	16	13	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13020734--13020763	8	3.8	8	100	0	60	40	36	0	23	1.55
13028545--13028609	21	3.1	20	78	10	76	63	3	3	30	1.25
13028550--13028616	21	3.2	21	73	14	66	62	4	1	31	1.24
13029306--13029340	14	2.6	14	95	4	63	37	37	14	11	1.82
13032390--13032468	32	2.6	29	75	14	79	49	1	1	48	1.17
13032863--13032901	21	2.0	20	90	10	62	53	0	0	46	1.00
13033538--13033614	29	2.8	28	81	11	88	58	1	0	40	1.06
13033603--13033664	16	3.5	18	77	20	60	45	3	0	51	1.17
13036143--13036186	8	5.2	8	81	8	52	20	2	0	77	0.88
13036143--13036186	17	2.6	17	85	3	63	20	2	0	77	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91