genome.fa.s201.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  55  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9123411--9123494	41	2.0	41	93	0	141	34	10	16	38	1.84
9123625--9123699	36	2.1	36	85	5	98	50	6	13	29	1.66
9125751--9125778	14	2.0	14	100	0	56	35	28	21	14	1.92
9127042--9127077	2	18.0	2	100	0	72	50	0	0	50	1.00
9130494--9130585	41	2.2	42	88	1	132	41	44	7	6	1.59
9134144--9134169	6	4.3	6	100	0	52	84	15	0	0	0.62
9134156--9134612	169	2.7	167	87	5	598	45	17	16	21	1.86
9135030--9135061	14	2.4	13	94	5	55	81	0	12	6	0.87
9137344--9137385	21	2.0	21	90	0	66	50	2	0	47	1.14
9137536--9137574	16	2.4	17	83	12	55	28	0	0	71	0.86
9137544--9137573	15	1.9	16	93	6	53	30	0	0	70	0.88
9138605--9138634	2	15.5	2	93	6	53	46	0	0	53	1.00
9138733--9138762	16	1.9	15	93	6	51	53	10	0	36	1.35
9143255--9143314	21	2.8	20	77	5	57	33	3	10	53	1.51
9144042--9144182	22	6.4	22	77	10	101	36	10	4	48	1.58
9144225--9144364	22	6.4	22	67	14	83	38	12	5	43	1.66
9144315--9144373	22	2.7	21	79	7	64	35	11	5	47	1.62
9144430--9144492	21	2.9	23	76	11	69	41	14	3	41	1.61
9144430--9144518	43	2.1	42	82	2	106	40	14	3	41	1.62
9145035--9145205	22	7.8	22	78	5	148	39	7	6	46	1.58
9145032--9145231	44	4.5	44	79	3	172	39	7	6	47	1.58
9145035--9145206	66	2.6	66	77	6	170	38	7	6	47	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9145245--9145286	22	1.9	22	85	0	57	38	11	4	45	1.62
9145392--9145460	22	3.1	23	79	10	72	34	4	2	57	1.33
9145522--9145566	22	2.0	22	91	0	72	33	15	8	42	1.78
9145580--9145666	22	4.0	22	75	11	72	39	13	4	42	1.65
9145580--9145664	44	1.9	44	81	9	102	40	12	4	42	1.64
9145709--9145848	22	6.4	22	73	7	88	36	12	5	45	1.64
9145765--9145972	22	9.6	22	74	7	140	35	11	5	47	1.64
9145765--9145956	44	4.4	44	76	4	165	35	11	6	46	1.66
9145893--9145979	42	2.1	41	85	10	115	35	10	3	50	1.53
9145893--9145993	42	2.5	40	82	9	114	36	9	2	50	1.51
9145908--9145992	41	2.0	43	82	8	104	36	10	1	51	1.44
9145926--9146759	140	6.0	140	90	3	1240	38	9	6	45	1.63
9145926--9146733	279	2.9	279	90	4	1249	37	9	6	46	1.63
9148553--9148611	30	2.0	30	84	15	79	33	11	3	50	1.56
9148535--9148611	29	2.6	29	78	13	77	33	12	6	46	1.68
9148651--9148707	30	1.9	30	85	0	78	38	5	15	40	1.70
9149192--9149229	17	2.2	17	90	0	58	42	0	2	55	1.14
9150072--9150110	7	5.6	7	84	0	51	82	2	2	12	0.89
9151092--9151154	29	2.3	26	83	8	72	63	4	1	30	1.24
9152648--9152688	17	2.5	17	84	11	50	46	2	4	46	1.37
9152740--9152784	6	7.7	6	85	5	56	24	0	0	75	0.80
9152734--9152787	23	2.3	24	90	6	85	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9152734--9152787	22	2.4	23	90	6	85	27	0	0	72	0.85
9152740--9152796	29	2.0	28	86	10	80	29	0	0	70	0.88
9152748--9152796	22	2.2	23	81	3	55	32	0	0	67	0.91
9156398--9156432	15	2.3	15	85	0	52	22	17	45	14	1.84
9156393--9156513	48	2.5	49	76	6	122	25	17	40	16	1.90
9160011--9160045	2	17.5	2	93	0	61	51	0	0	48	1.00
9162197--9162245	24	2.0	24	88	0	71	26	16	10	46	1.78
9163707--9163746	21	2.0	20	85	14	55	45	10	0	45	1.37
9164864--9164903	3	13.7	3	94	5	73	35	0	0	65	0.93
9165032--9165112	30	2.7	30	84	7	85	35	8	1	54	1.39
9168163--9168198	2	18.0	2	94	0	63	47	0	0	52	1.00
9170923--9170961	19	2.1	19	90	9	62	53	5	20	20	1.64
9173612--9173668	30	1.9	30	92	0	96	49	8	24	17	1.75
9175099--9175141	15	2.8	15	82	3	50	62	0	0	37	0.95
9175382--9175441	28	2.1	27	79	8	66	48	0	1	50	1.11
9175534--9175592	32	1.9	30	89	6	91	49	3	3	44	1.36
9175946--9175991	24	1.9	24	81	0	56	36	6	2	54	1.39
9176450--9176512	24	2.7	23	76	11	67	60	3	0	36	1.13
9185551--9185728	73	2.4	72	84	7	216	25	24	19	30	1.98
9190124--9190152	10	2.7	11	89	10	51	24	0	0	75	0.80
9193873--9194052	95	1.9	95	83	4	238	45	9	6	39	1.62
9196195--9196226	15	2.0	17	88	11	50	34	9	0	56	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9200421--9200602	38	4.7	40	77	10	155	37	12	16	33	1.86
9200798--9200897	18	5.7	17	70	11	58	36	9	7	48	1.62
9200944--9200978	17	2.1	17	88	0	52	40	11	11	37	1.77
9200998--9201111	18	6.4	18	76	7	81	30	15	7	46	1.73
9201059--9201116	28	2.1	27	81	9	64	32	12	12	43	1.79
9201165--9201225	22	2.8	22	76	0	68	37	11	11	39	1.78
9206636--9206871	128	1.8	129	87	3	348	32	16	16	34	1.91
9206636--9206897	131	2.0	129	84	2	337	35	15	16	32	1.91
9209210--9209538	165	2.0	164	95	0	595	42	16	6	34	1.74
9213716--9213747	2	16.0	2	100	0	64	50	0	0	50	1.00
9219041--9219075	2	17.5	2	93	0	61	0	2	45	51	1.16
9227802--9227854	22	2.5	22	75	9	56	50	0	0	49	1.00
9228090--9228130	21	2.0	21	85	0	55	51	2	4	41	1.36
9229409--9229446	20	1.9	19	89	5	58	55	13	10	21	1.67
9229637--9229664	3	9.3	3	100	0	56	32	0	0	67	0.91
9230655--9230758	18	5.7	18	70	22	65	32	1	0	64	1.11
9230676--9230739	19	3.4	19	77	18	80	39	1	0	59	1.07
9230666--9230738	37	2.2	32	76	23	80	35	1	0	63	1.04
9230674--9230758	37	2.3	37	88	8	136	36	1	1	61	1.12
9230840--9230882	16	2.6	16	85	3	50	48	0	2	48	1.14
9231561--9231628	30	2.2	31	82	14	88	16	2	2	77	1.00
9231561--9231627	21	3.2	20	80	17	66	14	2	2	79	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9231579--9231629	10	5.0	10	75	13	50	21	1	1	74	1.02
9231932--9231982	24	2.1	24	85	0	66	37	0	0	62	0.95
9233167--9233221	26	2.2	25	93	3	92	36	3	3	56	1.34
9235216--9235272	30	1.9	30	85	7	80	28	1	3	66	1.18
9240800--9240848	23	2.1	23	100	0	98	40	14	12	32	1.83
9242829--9242915	43	2.0	42	83	14	108	65	2	0	32	1.05
9245062--9245087	2	13.0	2	100	0	52	50	0	0	50	1.00
9252584--9252609	12	2.2	12	100	0	52	46	0	0	53	1.00
9252594--9252637	18	2.7	15	78	21	52	36	0	0	63	0.95
9252604--9252671	18	3.8	18	72	3	57	35	2	0	61	1.11
9255990--9256041	16	2.9	19	77	16	74	48	17	5	28	1.70
9265621--9265684	26	2.3	26	81	7	65	57	4	6	31	1.44
9267467--9267641	95	1.8	96	81	6	221	35	8	9	47	1.65
9268639--9268702	24	2.5	24	85	7	65	40	0	6	53	1.26
9268657--9268702	24	1.9	24	95	0	83	41	0	6	52	1.27
9269150--9269269	60	2.0	60	96	0	222	34	0	9	55	1.37
9271994--9272046	22	2.4	22	93	6	90	18	20	0	60	1.36
9272945--9272981	2	18.5	2	100	0	74	51	0	48	0	1.00
9278048--9278074	2	13.5	2	100	0	54	48	0	0	51	1.00
9279953--9279992	21	2.0	21	90	5	64	45	12	5	37	1.64
9282264--9282296	16	2.1	16	94	0	57	30	12	30	27	1.92
9282468--9282716	117	2.1	118	87	4	362	40	13	5	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9283619--9283671	19	2.9	18	80	8	54	54	11	1	32	1.47
9285615--9285652	19	2.0	20	94	5	69	21	0	18	60	1.36
9286003--9286037	4	8.5	4	87	6	52	20	0	5	74	1.02
9289294--9289352	23	2.6	22	79	10	57	32	18	6	42	1.77
9292628--9292900	56	4.9	55	78	8	277	48	5	9	36	1.60
9293205--9293244	20	2.0	20	90	0	62	32	7	15	45	1.74
9295366--9295809	158	2.8	157	80	4	477	36	15	13	34	1.87
9295796--9295910	61	1.9	61	81	1	142	46	14	11	26	1.79
9296989--9297055	34	2.0	34	85	5	91	22	14	13	49	1.79
9301170--9301203	16	2.2	15	89	5	50	55	11	17	14	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91