genome.fa.s201.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  41  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7066886--7066945	24	2.6	23	79	15	61	5	18	5	71	1.23
7067280--7067696	144	2.9	143	83	4	500	40	12	13	32	1.83
7078755--7078884	27	4.6	27	81	11	102	69	0	17	13	1.19
7078744--7078836	27	3.5	25	81	12	82	69	1	17	11	1.23
7078770--7078856	9	9.8	9	87	7	124	74	0	12	12	1.07
7078787--7078884	9	10.6	9	83	12	74	72	0	15	12	1.12
7080011--7080038	14	2.0	14	100	0	56	35	7	21	35	1.81
7080044--7080112	24	2.9	24	82	4	86	39	4	15	40	1.68
7080096--7080139	20	2.2	20	87	0	61	34	6	15	43	1.74
7080149--7080218	24	2.9	22	76	16	68	32	8	17	41	1.79
7080081--7080358	88	3.1	88	83	4	367	37	7	15	39	1.77
7080163--7080218	24	2.3	24	90	0	94	32	7	21	39	1.80
7080848--7081090	43	5.6	43	80	3	254	25	14	15	44	1.85
7080851--7081091	86	2.8	87	84	2	297	25	14	14	44	1.84
7081369--7081413	19	2.4	19	80	0	54	28	0	28	42	1.56
7082821--7082920	51	2.0	51	82	7	123	50	12	11	27	1.73
7083920--7084036	14	8.8	13	75	11	94	22	5	20	51	1.69
7083923--7084036	27	4.3	27	76	10	110	21	6	20	51	1.68
7083923--7084034	40	2.8	40	82	5	120	21	6	20	51	1.69
7084238--7084267	11	2.7	11	94	0	51	20	3	0	76	0.92
7086026--7086073	16	3.0	16	79	11	62	20	2	0	77	0.88
7086016--7086071	9	6.6	9	80	14	57	23	1	1	73	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7086562--7086634	22	3.3	22	77	7	58	23	19	19	38	1.93
7086668--7086744	32	2.4	32	85	10	95	27	14	23	35	1.93
7086771--7087302	33	16.5	33	72	8	218	31	17	18	32	1.94
7087186--7087326	65	2.2	65	84	2	176	31	16	18	33	1.93
7086962--7087325	163	2.2	162	79	6	396	31	17	17	33	1.94
7094682--7094734	26	2.0	26	89	7	81	22	3	20	52	1.62
7094682--7094724	12	3.4	12	75	12	50	20	4	20	53	1.63
7096096--7096131	14	2.5	15	90	4	56	5	11	2	80	0.98
7096897--7096971	14	5.5	14	77	4	73	29	1	2	66	1.13
7096935--7097018	8	10.0	8	72	23	66	22	1	3	72	1.07
7096949--7097018	33	2.2	30	85	9	95	21	1	4	72	1.09
7096951--7097019	31	2.2	33	89	5	106	20	1	4	73	1.07
7100181--7100212	10	3.1	10	95	4	55	50	0	21	28	1.49
7103321--7103350	15	2.0	15	93	0	51	33	16	36	13	1.88
7109009--7109111	52	2.0	53	90	5	165	28	11	11	48	1.74
7109728--7109790	4	15.8	4	77	12	58	71	6	1	20	1.16
7112029--7112074	24	1.9	24	86	8	67	43	6	15	34	1.72
7114085--7114123	3	13.0	3	88	0	60	66	5	0	28	1.12
7114863--7114888	12	2.2	12	100	0	52	92	0	7	0	0.39
7116122--7116181	17	3.7	16	76	10	59	76	3	16	3	1.05
7116125--7116175	17	2.9	18	82	8	61	78	3	15	1	0.99
7116487--7116534	8	5.9	8	75	4	51	81	4	12	2	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7116487--7116535	25	2.0	25	84	8	64	81	4	12	2	0.91
7116487--7116524	13	3.0	13	84	3	51	81	5	13	0	0.85
7117643--7117788	33	4.5	32	81	3	148	41	16	13	28	1.87
7117642--7117788	65	2.3	65	82	7	174	40	16	13	29	1.86
7117958--7118047	31	2.9	31	77	0	90	21	27	15	35	1.94
7118195--7118260	31	2.1	31	91	0	105	24	27	15	33	1.95
7119590--7119638	14	3.4	14	80	2	53	81	10	2	6	0.94
7119588--7119646	16	3.8	15	77	6	64	84	8	1	5	0.82
7119588--7119630	21	2.1	20	91	4	68	83	9	0	6	0.80
7121836--7121869	16	2.1	17	88	5	52	29	8	0	61	1.26
7121893--7121940	12	3.8	12	76	15	51	72	2	0	25	0.95
7122054--7122081	3	9.3	3	100	0	56	67	0	0	32	0.91
7125676--7125845	59	2.9	59	78	4	191	35	11	3	50	1.55
7125842--7125874	14	2.3	15	89	5	50	27	0	9	63	1.24
7125792--7125932	72	2.0	72	83	10	182	37	9	4	48	1.56
7125933--7126073	61	2.3	60	85	7	180	37	14	4	43	1.65
7125963--7126098	61	2.2	61	84	5	177	37	11	5	46	1.62
7126999--7127079	4	20.0	4	83	14	80	71	4	0	23	1.05
7127299--7127544	44	5.6	45	81	3	252	46	20	10	22	1.81
7127311--7127544	87	2.7	88	81	4	265	47	21	9	21	1.80
7127311--7127549	131	1.8	132	84	1	320	46	21	10	22	1.80
7128534--7128571	9	4.0	10	86	13	62	10	7	0	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7128534--7128571	19	2.0	19	94	0	67	10	7	0	81	0.87
7139022--7139178	63	2.6	59	84	9	210	33	11	7	47	1.66
7139126--7139271	77	1.9	78	92	1	249	37	8	6	47	1.60
7139196--7139381	59	3.2	58	82	7	218	36	10	5	47	1.61
7142885--7143030	7	21.6	7	70	20	62	17	2	34	45	1.61
7142848--7143024	37	4.9	37	72	16	95	18	1	32	46	1.59
7142842--7143025	18	10.1	18	70	16	80	18	1	33	46	1.59
7142884--7142974	36	2.5	35	80	8	94	19	2	36	41	1.64
7142961--7143011	14	3.7	14	86	5	77	15	0	31	52	1.43
7142961--7143030	27	2.6	27	81	6	70	15	1	31	51	1.53
7142956--7143011	20	2.8	20	97	2	103	16	0	33	50	1.45
7143001--7143263	20	12.9	21	79	9	215	14	4	33	47	1.65
7143001--7143304	20	15.1	19	75	12	177	14	5	31	48	1.66
7143158--7143285	60	2.1	60	88	2	195	14	5	32	48	1.66
7144038--7144424	144	2.7	140	78	9	336	39	14	13	32	1.85
7145708--7145879	61	2.9	59	80	4	150	34	9	15	40	1.80
7145984--7146037	28	1.9	28	85	7	74	29	7	20	42	1.79
7146012--7146080	28	2.5	28	74	9	77	31	14	14	39	1.86
7147247--7147309	31	2.0	31	90	0	99	33	6	12	47	1.67
7147677--7147703	3	9.0	3	100	0	54	66	0	0	33	0.92
7166194--7170441	541	7.9	533	74	8	2832	42	10	8	39	1.68
7166195--7170442	181	23.6	181	73	8	2396	42	10	8	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7170600--7173773	181	17.7	179	75	8	2075	40	8	10	40	1.69
7171786--7171838	27	2.0	27	85	7	72	41	7	9	41	1.66
7175165--7175454	158	1.8	159	81	6	365	41	7	9	41	1.65
7175301--7176820	180	8.4	179	75	9	1093	40	8	9	42	1.66
7176577--7176609	15	2.3	15	89	5	50	21	3	3	72	1.11
7176814--7192167	181	85.8	180	73	9	8448	40	7	9	42	1.67
7176306--7177323	504	2.0	501	81	6	1177	41	8	8	41	1.65
7176814--7192164	539	28.6	532	74	9	8904	40	7	9	42	1.67
7183006--7183045	20	2.0	20	85	4	55	40	2	0	57	1.12
7176814--7192168	358	42.9	356	74	8	9381	40	7	9	42	1.67
7184276--7184311	17	2.1	17	90	10	56	38	2	5	52	1.39
7185240--7185272	18	1.9	17	88	11	50	48	6	6	39	1.53
7184773--7192164	180	41.2	180	75	7	5148	40	7	9	42	1.67
7184780--7192164	357	20.6	355	75	7	4951	40	7	9	42	1.67
7186793--7186832	19	2.0	22	85	14	59	42	10	15	32	1.79
7192061--7192266	104	2.0	105	86	5	292	34	8	7	48	1.63
7192656--7193246	180	3.3	180	75	7	457	40	7	10	41	1.68
7192656--7193329	180	3.7	181	76	7	433	40	7	10	41	1.68
7193224--7193482	134	1.9	133	80	0	302	35	8	8	46	1.66
7192719--7193982	675	1.9	675	81	3	1553	40	7	9	42	1.66
7193359--7195200	181	10.2	181	74	8	1290	40	8	9	41	1.67
7193359--7195735	362	6.7	359	73	11	1476	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7194416--7194448	18	1.9	17	88	11	50	48	6	6	39	1.53
7195049--7195357	157	2.0	157	81	5	365	40	8	10	41	1.68
7197305--7197348	10	4.1	11	83	13	56	25	4	0	70	1.06
7197303--7197337	12	3.1	12	84	16	56	22	5	0	71	1.07
7197787--7197837	3	16.7	3	95	4	93	31	0	0	68	0.90
7200150--7200604	228	2.0	228	99	0	901	29	21	15	32	1.94
7206670--7206711	22	1.9	22	90	0	66	33	9	16	40	1.81
7208139--7208183	21	2.2	20	88	4	63	33	4	2	60	1.29
7211752--7211805	28	1.9	28	84	0	72	55	14	5	24	1.61
7212637--7212689	24	2.2	24	93	3	90	32	11	30	26	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91