genome.fa.s201.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  59  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9788659--9788759	17	5.9	17	65	20	50	68	0	6	23	1.20
9788660--9788742	17	5.2	17	67	18	54	69	1	7	21	1.19
9788713--9788771	23	2.6	23	80	0	73	72	1	5	20	1.12
9788649--9788810	85	1.9	86	83	8	215	68	1	5	24	1.18
9788753--9788808	6	8.7	6	81	11	58	75	0	1	23	0.90
9789367--9789399	16	2.0	17	88	5	50	57	12	0	30	1.35
9789599--9789657	26	2.4	25	85	5	75	62	1	6	28	1.30
9789715--9789757	15	3.0	15	90	6	63	62	2	6	27	1.33
9789716--9789764	15	3.5	13	81	15	53	65	2	8	24	1.31
9789770--9789811	18	2.3	18	91	0	66	69	0	0	30	0.89
9789744--9789824	23	3.5	23	74	16	62	70	2	3	23	1.16
9790012--9790369	47	7.9	47	84	4	418	40	20	14	24	1.90
9801831--9802158	59	5.5	58	83	5	338	36	11	7	44	1.69
9801831--9802158	118	2.8	115	81	8	374	36	11	7	44	1.69
9801831--9802231	177	2.2	178	84	7	488	35	11	6	46	1.66
9801832--9802231	118	3.3	116	77	12	334	35	11	6	46	1.66
9802243--9802307	13	5.3	12	77	17	64	76	0	4	18	0.95
9802270--9802310	6	7.0	6	83	5	57	80	0	2	17	0.82
9802240--9802308	17	4.2	17	75	15	65	78	0	4	17	0.91
9803004--9803035	15	2.1	16	88	11	50	9	21	0	68	1.17
9803163--9803215	17	2.9	18	86	10	65	79	3	3	13	1.01
9803198--9803275	42	1.9	41	82	12	99	64	6	6	23	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9803260--9803341	21	3.8	20	75	16	67	62	4	6	26	1.39
9803275--9803339	14	4.4	14	74	12	51	61	4	6	27	1.40
9803299--9803349	23	2.2	23	86	6	68	60	1	5	31	1.31
9803410--9803451	7	6.0	7	86	8	59	69	0	2	28	1.01
9803479--9803524	7	6.6	7	78	16	51	73	2	2	21	1.04
9803479--9803503	12	2.1	12	100	0	50	76	0	0	24	0.80
9810086--9810127	21	1.9	23	85	9	61	64	4	2	28	1.26
9811659--9811694	17	2.1	18	90	10	58	61	0	0	38	0.96
9812863--9812919	22	2.8	20	70	19	53	50	5	5	38	1.47
9821317--9821353	2	20.0	2	84	15	53	48	0	0	51	1.00
9821913--9822277	182	2.0	182	100	0	730	25	15	27	30	1.96
9822401--9822497	43	2.3	41	75	13	99	50	1	2	46	1.20
9822613--9822645	17	1.9	17	100	0	66	48	3	0	48	1.17
9822533--9822654	53	2.2	56	79	16	141	44	2	0	52	1.20
9825508--9825540	3	11.0	3	93	0	57	30	0	3	66	1.06
9827149--9827207	31	1.9	30	89	3	91	40	10	8	40	1.69
9831262--9831289	2	14.0	2	100	0	56	50	0	0	50	1.00
9831806--9831856	17	2.9	17	86	11	68	68	0	0	31	0.90
9831806--9831857	18	2.9	18	88	8	72	69	0	0	30	0.89
9831826--9831870	18	2.6	18	86	6	58	71	2	0	26	0.98
9834367--9834401	18	1.9	18	94	0	61	31	14	34	20	1.92
9839109--9839153	2	22.5	2	90	0	72	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9839702--9839731	2	15.0	2	100	0	60	50	0	0	50	1.00
9842501--9842539	2	20.5	2	84	10	55	56	0	0	43	0.99
9845559--9845607	24	2.0	24	96	0	89	16	26	12	44	1.82
9851970--9852002	16	2.0	17	94	5	59	0	15	0	84	0.61
9853700--9853761	22	2.5	26	75	25	78	58	0	3	38	1.15
9853706--9853758	22	2.4	22	100	0	106	54	0	3	41	1.18
9854425--9854449	4	6.2	4	100	0	50	76	0	0	24	0.80
9854455--9854487	16	2.0	17	94	5	59	60	0	9	30	1.27
9855096--9855282	78	2.4	78	85	7	247	58	4	5	31	1.42
9859058--9859110	18	2.8	19	80	11	56	35	9	5	49	1.59
9861224--9861369	52	2.8	52	82	0	175	26	22	7	43	1.80
9861394--9861424	11	2.8	11	95	0	53	51	32	0	16	1.44
9864692--9864745	16	3.3	16	71	28	51	7	16	7	68	1.36
9866221--9866263	2	21.5	2	95	0	77	53	46	0	0	1.00
9867069--9867142	22	3.3	22	74	7	67	40	5	6	47	1.53
9867217--9867272	25	2.2	25	77	0	58	39	8	7	44	1.63
9867274--9867325	22	2.4	22	80	0	59	38	11	5	44	1.65
9867274--9867325	11	4.7	11	75	0	50	38	11	5	44	1.65
9868248--9868343	22	4.4	22	78	5	86	42	7	4	45	1.51
9868248--9868364	22	5.3	21	74	10	56	42	5	5	46	1.50
9868850--9868964	22	5.2	22	74	8	83	36	8	8	46	1.66
9869093--9869261	22	7.7	22	76	10	116	35	7	5	51	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9869094--9869241	66	2.3	66	79	10	169	35	8	4	52	1.52
9870438--9870592	77	2.0	76	88	2	231	54	9	9	25	1.63
9871481--9871520	3	13.3	3	100	0	80	67	0	0	32	0.91
9871893--9871941	17	2.9	17	84	0	62	48	6	12	32	1.65
9871952--9872005	16	3.4	16	85	7	67	50	9	5	35	1.58
9872092--9872140	16	2.9	17	75	6	55	48	8	12	30	1.69
9872115--9872267	73	2.1	73	91	0	243	41	15	12	30	1.84
9872182--9872213	16	2.0	16	93	0	55	46	25	9	18	1.79
9872715--9872766	24	2.3	22	90	9	79	42	13	5	38	1.68
9873887--9873920	9	3.8	9	84	0	50	8	14	0	76	1.01
9873889--9873930	18	2.4	18	92	4	68	11	16	0	71	1.14
9879625--9879693	22	3.1	22	80	0	84	40	5	2	50	1.41
9879733--9879802	22	3.2	21	73	15	61	34	7	5	52	1.52
9879742--9879815	22	3.4	22	77	7	87	35	4	5	55	1.42
9879767--9879857	22	4.1	22	73	10	69	35	6	5	52	1.51
9879731--9879850	44	2.7	43	81	6	134	32	7	5	54	1.53
9879767--9879920	67	2.3	67	77	5	161	35	8	6	49	1.59
9880255--9880296	22	1.9	22	90	0	66	40	7	4	47	1.52
9885274--9885322	18	2.6	19	74	6	55	38	12	6	42	1.67
9892448--9892681	22	10.7	22	71	8	129	35	5	4	54	1.43
9892450--9892619	11	15.5	11	63	8	51	36	4	3	55	1.36
9892447--9892674	44	5.2	44	73	7	178	35	5	4	54	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9892804--9892928	66	1.9	66	80	6	146	32	3	7	56	1.42
9898103--9898151	18	2.6	19	74	6	55	38	12	6	42	1.67
9913817--9913850	16	2.1	16	88	0	50	0	20	0	79	0.73
9916382--9916429	19	2.5	19	75	3	51	29	6	2	62	1.31
9916928--9917092	80	2.1	80	91	1	269	57	5	5	31	1.44
9917053--9917107	20	2.8	20	72	13	60	58	1	3	36	1.26
9916928--9917117	80	2.4	80	86	5	251	57	4	4	32	1.40
9917096--9917133	19	2.0	20	94	5	69	63	0	0	36	0.95
9917099--9917133	13	2.7	13	81	0	52	62	0	0	37	0.95
9920876--9920918	19	2.3	19	84	4	52	39	16	6	37	1.75
9921970--9922014	20	2.3	20	88	3	65	80	0	0	20	0.72
9923891--9924013	1	123.0	1	71	0	57	82	4	4	8	0.91
9923891--9924014	9	13.9	9	81	11	112	82	4	4	9	0.93
9923891--9924003	17	6.4	17	76	12	104	83	4	2	9	0.89
9926201--9926308	48	2.2	47	85	12	148	69	11	1	17	1.27
9927357--9927399	22	1.9	23	85	4	61	41	0	9	48	1.35
9930822--9930854	17	2.0	17	88	5	50	33	3	0	63	1.10
9931145--9931184	20	2.1	19	90	4	62	47	0	0	52	1.00
9932513--9932670	77	2.0	78	90	2	246	55	5	6	32	1.48
9932517--9932637	39	3.1	39	70	11	113	57	4	4	33	1.42
9945148--9945191	7	5.9	7	82	15	52	31	0	2	65	1.05
9945143--9945185	12	3.6	12	77	22	54	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9945136--9945191	24	2.3	24	96	0	103	32	0	1	66	1.03
9959643--9959672	15	1.9	16	93	6	53	23	46	0	30	1.52
9967317--9967353	18	2.1	18	89	0	56	67	5	2	24	1.25
9968225--9968411	12	13.9	14	72	22	79	58	2	1	37	1.20
9968234--9968276	11	4.0	11	88	8	54	55	0	0	44	0.99
9968224--9968411	7	27.3	7	71	24	109	58	2	1	37	1.20
9968333--9968411	38	2.1	37	84	11	99	56	2	0	40	1.12
9968784--9968882	38	2.6	37	81	9	110	58	5	2	34	1.31
9968870--9968957	26	3.3	27	78	12	83	60	5	2	31	1.33
9969058--9969105	20	2.4	20	80	13	55	54	4	6	35	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91