genome.fa.s201.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  20  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3494211--3494280	24	2.9	24	79	10	72	32	5	1	60	1.29
3494222--3494261	11	3.5	11	80	12	53	27	2	0	70	1.01
3494635--3494660	2	13.0	2	100	0	52	50	0	0	50	1.00
3501096--3501155	23	2.8	21	78	16	68	41	0	1	56	1.09
3501215--3501271	21	2.7	21	72	20	55	57	0	0	42	0.98
3501444--3501488	21	2.1	21	84	8	56	48	0	0	51	1.00
3509485--3509545	32	1.9	32	86	0	86	45	4	3	45	1.41
3510178--3510217	2	20.0	2	100	0	80	50	0	0	50	1.00
3510675--3510716	12	3.3	12	81	12	57	30	0	0	69	0.89
3510675--3510713	14	2.9	14	85	7	55	30	0	0	69	0.89
3510710--3510758	18	2.7	19	87	6	75	53	0	0	46	1.00
3510710--3510756	19	2.6	19	90	6	71	51	0	0	48	1.00
3511662--3511824	60	2.7	60	80	4	150	44	15	3	36	1.63
3511685--3511824	61	2.3	59	82	6	156	46	15	2	35	1.60
3512258--3512300	16	2.7	15	89	7	59	16	0	4	79	0.90
3512259--3512326	25	2.7	25	80	11	68	19	0	5	75	1.01
3512307--3512447	4	34.2	4	72	14	83	29	2	2	65	1.15
3512307--3512442	59	2.3	59	79	16	142	30	2	2	65	1.16
3512307--3512491	57	3.4	54	78	15	150	29	2	2	65	1.18
3513429--3513521	5	18.6	5	75	18	70	17	4	1	77	0.99
3513429--3513521	19	5.2	18	73	13	84	17	4	1	77	0.99
3513416--3513526	33	3.3	32	78	15	118	17	7	0	74	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3513539--3514465	59	15.7	57	82	7	1016	44	6	13	35	1.69
3514214--3514248	19	1.9	18	88	11	54	40	8	5	45	1.58
3517693--3517808	8	14.6	8	88	10	152	77	0	11	11	0.99
3518850--3518929	36	2.2	36	90	0	124	43	7	10	38	1.66
3518869--3519120	21	11.8	21	70	19	130	39	8	13	38	1.74
3518893--3518981	46	1.9	46	93	0	151	41	8	13	35	1.76
3518905--3519120	68	3.3	67	81	12	234	39	8	12	38	1.75
3518972--3519084	43	2.5	45	81	7	131	39	8	11	39	1.73
3519101--3519214	58	1.9	58	83	1	147	35	11	16	36	1.85
3519643--3519746	42	2.5	41	81	4	111	25	8	21	45	1.80
3519737--3519869	44	3.0	45	80	2	153	25	12	17	45	1.83
3519796--3519896	44	2.3	44	82	3	114	21	14	20	42	1.88
3520963--3521006	5	7.7	6	90	10	58	31	0	0	68	0.90
3520956--3521006	10	4.7	11	82	17	63	31	0	0	68	0.90
3521024--3521058	14	2.4	15	95	4	63	57	8	0	34	1.29
3521116--3521255	74	1.9	74	85	2	192	52	4	8	34	1.51
3521174--3521288	60	1.9	60	80	5	135	52	4	9	33	1.54
3522410--3522447	18	2.2	18	85	4	51	68	0	0	31	0.90
3537182--3537244	31	2.0	32	87	3	92	61	3	1	33	1.21
3540127--3540185	29	2.0	29	83	0	73	50	1	1	45	1.21
3540156--3540211	18	2.9	19	76	7	51	46	1	0	51	1.11
3541564--3541598	2	18.0	2	94	5	63	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3544502--3544674	72	2.4	72	79	0	202	39	10	4	45	1.58
3544649--3544724	40	1.9	39	86	7	109	40	9	7	42	1.66
3544761--3544850	41	2.2	41	81	0	99	33	10	6	50	1.62
3544709--3544975	118	2.3	115	81	10	285	34	9	6	49	1.61
3546966--3547019	27	2.1	25	83	13	65	46	11	1	40	1.50
3547310--3547369	30	1.9	32	90	6	97	61	5	6	26	1.42
3550497--3550526	3	10.0	3	100	0	60	66	0	0	33	0.92
3551286--3551313	2	14.0	2	100	0	56	50	0	0	50	1.00
3551452--3551513	28	2.2	28	80	8	72	53	8	12	25	1.66
3557079--3557116	11	3.7	10	86	13	51	26	2	0	71	1.00
3557079--3557116	20	1.9	20	94	0	67	26	2	0	71	1.00
3559509--3559564	10	5.4	10	76	14	51	30	0	0	69	0.89
3559509--3559564	22	2.7	20	74	15	51	30	0	0	69	0.89
3559519--3559580	20	3.3	20	71	17	60	32	0	0	67	0.91
3562781--3563436	161	4.1	158	77	6	502	42	14	8	34	1.77
3566828--3566874	22	2.0	22	84	8	58	34	2	0	63	1.06
3574209--3574816	141	4.2	144	78	8	571	29	13	21	35	1.91
3574209--3574816	46	12.7	49	75	9	488	29	13	21	35	1.91
3574483--3574772	49	5.9	50	79	7	213	29	14	21	34	1.93
3574216--3574816	95	6.3	96	77	8	419	29	13	20	35	1.91
3575076--3575114	14	2.8	14	85	11	53	0	30	0	69	0.89
3578843--3578884	11	3.8	11	87	0	66	19	0	30	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3578842--3578898	22	2.6	22	88	2	80	22	1	28	47	1.61
3578920--3579061	52	2.7	53	85	8	202	42	8	23	26	1.82
3579914--3579944	11	2.8	11	100	0	62	19	0	29	51	1.47
3579982--3580093	52	2.2	52	85	0	152	47	7	16	29	1.73
3580674--3580755	25	3.3	24	77	6	74	43	2	26	26	1.67
3581075--3581208	52	2.6	51	83	9	155	45	4	20	29	1.71
3582069--3582100	11	2.9	11	90	0	55	25	0	28	46	1.53
3582136--3582250	51	2.2	51	90	4	178	47	5	18	28	1.70
3583122--3583160	11	3.5	11	82	0	51	23	0	25	51	1.49
3583199--3583343	52	2.8	51	78	8	150	45	6	20	28	1.75
3583925--3583978	25	2.2	25	83	6	65	40	1	31	25	1.66
3585362--3585506	52	2.8	52	83	7	179	46	6	18	27	1.74
3586099--3586156	25	2.3	25	87	0	89	41	5	32	20	1.75
3586055--3586156	50	2.0	50	81	7	118	43	6	28	21	1.78
3586396--3586437	11	3.8	11	87	0	66	19	0	30	50	1.48
3586395--3586437	22	2.0	22	95	0	77	20	0	30	48	1.50
3586470--3586616	52	2.8	53	80	7	167	46	5	19	28	1.72
3587147--3587211	25	2.6	25	80	2	67	43	6	26	24	1.77
3587542--3587688	52	2.8	52	86	6	208	45	8	19	26	1.78
3588260--3588321	25	2.5	24	80	14	74	37	3	35	24	1.72
3588564--3588605	11	3.8	12	81	15	54	21	0	28	50	1.49
3588563--3588618	22	2.6	23	83	11	73	23	1	26	48	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3588645--3588784	52	2.7	53	83	6	171	42	7	22	28	1.80
3592622--3592646	2	12.5	2	100	0	50	48	0	0	52	1.00
3597132--3597160	13	2.3	13	94	5	51	82	0	3	13	0.79
3597302--3597365	31	2.1	31	84	0	83	54	3	10	31	1.51
3599858--3599899	15	3.0	14	76	10	50	40	0	0	59	0.97
3602209--3602579	200	1.9	196	80	8	435	26	9	14	48	1.75
3603831--3603855	9	2.8	9	100	0	50	8	0	0	92	0.40
3614822--3614862	21	2.0	21	90	0	64	9	17	9	63	1.51
3618150--3618189	3	14.0	3	84	10	57	65	2	0	32	1.06
3618151--3618189	14	2.8	14	96	0	69	64	2	0	33	1.08
3618150--3618189	17	2.4	17	91	8	64	65	2	0	32	1.06
3619516--3619561	24	1.9	24	82	8	58	73	0	8	17	1.07
3619828--3619863	18	2.0	18	88	0	54	75	2	0	22	0.94
3632591--3632834	63	3.9	62	79	8	271	34	16	13	36	1.88
3632544--3632787	126	1.9	128	81	6	300	34	15	13	36	1.86
3632604--3632834	126	1.8	125	83	6	306	33	16	14	35	1.89
3636798--3636830	3	11.0	3	100	0	66	33	0	0	66	0.92
3637443--3637478	17	2.1	17	90	10	56	66	0	27	5	1.13
3639309--3639335	2	13.5	2	100	0	54	48	0	0	51	1.00
3640235--3640267	16	2.0	17	88	5	50	48	0	0	51	1.00
3640455--3640486	7	4.6	7	100	0	64	40	0	0	59	0.97
3641999--3642031	2	16.5	2	100	0	66	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3643404--3643431	6	4.7	6	100	0	56	32	0	0	67	0.91
3643495--3643533	18	2.2	18	86	4	53	38	0	2	58	1.12
3644637--3644666	16	1.9	16	93	6	53	33	0	3	63	1.11
3646881--3646913	16	1.9	17	88	11	50	66	6	0	27	1.15
3647687--3647835	60	2.5	61	81	9	173	34	5	20	39	1.75
3647828--3647871	15	2.8	15	81	18	54	54	0	11	34	1.36
3647954--3648236	129	2.2	128	81	6	322	44	4	9	42	1.56
3648364--3648480	61	1.9	61	86	6	166	40	3	16	40	1.65
3648380--3648515	61	2.2	61	78	7	150	40	2	18	38	1.66
3648928--3649010	26	3.0	28	68	19	75	39	4	14	40	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91