genome.fa.s201.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  67  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11153834--11153875	13	3.2	13	82	0	57	23	7	0	69	1.13
11153896--11153927	9	3.4	9	95	4	55	81	0	0	18	0.70
11153896--11153927	5	6.8	5	86	13	50	81	0	0	18	0.70
11157755--11157789	18	2.0	18	94	5	63	17	14	0	68	1.21
11161423--11161543	34	3.6	34	79	2	120	23	21	9	45	1.80
11161354--11161487	67	2.0	67	83	0	169	22	23	10	44	1.83
11161496--11161638	33	4.3	33	78	7	146	18	13	11	55	1.67
11161526--11161671	67	2.2	67	82	2	168	17	15	11	55	1.69
11161559--11161805	134	1.8	134	80	5	293	20	17	11	51	1.76
11161697--11161871	33	5.2	32	76	10	138	19	17	13	49	1.79
11161700--11161871	66	2.6	66	77	7	168	19	16	13	49	1.79
11161717--11161871	33	4.7	33	78	7	152	20	18	14	47	1.82
11163985--11164312	144	2.3	145	81	7	364	47	6	8	37	1.60
11164195--11164230	5	7.0	5	96	3	63	80	0	0	19	0.71
11164582--11164621	15	2.7	16	77	14	50	47	2	0	50	1.14
11166385--11166445	19	3.4	19	77	20	53	77	6	0	16	0.98
11166385--11166427	20	2.2	19	84	12	52	76	4	0	18	0.95
11167055--11167102	2	24.0	2	86	0	69	56	0	0	43	0.99
11170811--11170860	19	2.8	19	91	8	79	44	4	4	48	1.40
11171641--11171672	16	2.0	16	100	0	64	50	25	12	12	1.75
11177049--11177094	24	2.0	23	83	12	58	15	21	21	41	1.90
11177603--11177639	9	4.0	9	86	6	56	18	0	0	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11177604--11177637	13	2.7	13	86	4	52	17	0	0	82	0.67
11179026--11179070	13	3.4	13	87	3	63	77	2	4	15	1.02
11179026--11179070	7	6.8	6	87	12	54	77	2	4	15	1.02
11179220--11179329	53	2.1	52	81	11	127	50	6	9	34	1.60
11187268--11187317	14	3.4	14	76	15	55	78	0	22	0	0.76
11187275--11187328	17	3.2	17	80	10	67	81	0	18	0	0.69
11187267--11187327	24	2.6	24	79	7	72	80	0	19	0	0.72
11187270--11187328	31	1.9	31	86	6	84	79	0	20	0	0.73
11187318--11187365	15	2.9	16	81	9	53	75	0	6	18	1.01
11187333--11187376	21	2.1	21	91	0	70	77	0	2	20	0.88
11192225--11192257	17	2.0	17	94	5	59	75	0	12	12	1.04
11195207--11195245	9	4.3	9	90	0	51	66	23	0	10	1.22
11195208--11195239	3	10.7	3	93	0	55	68	28	0	3	1.04
11200059--11200199	40	3.6	38	72	12	117	39	2	8	49	1.48
11200333--11200380	9	5.1	9	85	9	69	45	2	0	52	1.12
11200338--11200384	20	2.3	20	92	0	76	48	2	0	48	1.13
11200347--11200384	11	3.6	11	82	13	53	50	0	0	50	1.00
11203135--11203184	6	8.8	6	91	4	61	0	0	14	86	0.58
11203135--11203184	5	10.0	5	91	6	59	0	0	14	86	0.58
11204305--11204343	12	3.2	12	88	3	51	64	2	0	33	1.08
11205727--11205753	14	1.9	14	100	0	54	22	0	18	59	1.38
11208729--11208775	10	4.5	10	77	17	51	31	2	4	61	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11208723--11208763	21	2.0	21	85	9	57	29	0	9	60	1.28
11210753--11210812	30	2.0	31	93	3	104	25	10	21	43	1.83
11211462--11211502	16	2.6	16	88	7	57	46	0	2	51	1.14
11212001--11212039	19	2.1	19	90	9	62	53	10	10	25	1.66
11213038--11213140	41	2.5	41	95	0	179	23	21	16	38	1.92
11214111--11214147	12	3.0	13	80	11	51	24	2	5	67	1.25
11214555--11214590	9	4.0	9	96	0	63	22	2	0	75	0.94
11216804--11216875	30	2.4	30	92	0	117	26	16	15	41	1.88
11219220--11219326	53	2.0	54	96	1	198	33	10	5	50	1.60
11225488--11225527	21	2.0	21	85	5	55	2	17	5	75	1.10
11226285--11226382	19	5.3	18	73	18	60	66	3	0	30	1.07
11226286--11226381	17	5.3	17	78	15	86	65	3	0	31	1.08
11226286--11226355	16	4.2	16	74	15	52	64	1	0	34	1.03
11226295--11226443	19	7.7	19	69	16	76	63	3	2	31	1.22
11226585--11226631	19	2.5	19	77	16	53	25	2	6	65	1.27
11226841--11226891	18	3.0	17	78	15	61	37	3	0	58	1.16
11226842--11226907	19	3.7	18	79	15	57	37	3	0	59	1.13
11226862--11226907	19	2.5	20	86	10	62	43	0	0	56	0.99
11226873--11226958	45	1.9	44	86	6	120	36	2	1	60	1.17
11229251--11229507	80	3.0	83	89	8	376	26	18	21	34	1.96
11230482--11230537	27	2.1	27	100	0	112	39	3	10	46	1.56
11232035--11232062	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11232535--11232569	17	2.1	17	89	5	54	62	0	0	37	0.95
11232718--11232778	27	2.2	28	85	5	81	47	0	1	50	1.10
11232800--11232847	21	2.3	20	82	6	69	52	0	0	47	1.00
11232859--11232933	29	2.5	29	76	10	71	61	1	6	30	1.30
11233421--11233460	17	2.4	17	86	0	53	50	2	2	45	1.28
11235539--11235750	33	6.4	33	76	6	178	45	14	16	23	1.84
11235539--11235755	69	3.3	67	75	5	190	45	13	17	23	1.84
11235733--11235853	33	3.8	31	78	10	120	47	9	19	23	1.77
11235741--11235869	65	2.0	64	80	10	145	45	9	19	25	1.80
11235858--11235959	53	1.9	53	83	0	132	55	9	14	19	1.67
11235911--11236016	34	3.1	34	74	17	103	54	11	14	19	1.69
11237481--11237520	18	2.2	18	90	0	62	0	7	10	82	0.84
11246829--11246876	19	2.6	19	83	3	62	45	4	2	47	1.33
11253888--11254441	63	8.7	63	77	7	401	36	9	8	46	1.67
11254016--11254113	32	3.1	32	71	17	87	39	9	8	42	1.66
11254031--11254133	32	3.3	30	70	21	77	33	10	11	43	1.76
11254182--11254280	31	3.2	31	66	23	89	29	14	12	44	1.81
11254189--11254291	32	3.2	32	67	22	99	30	11	11	46	1.76
11253888--11254424	189	2.8	190	80	5	575	36	9	8	46	1.66
11253887--11254436	126	4.3	126	79	5	507	36	9	8	46	1.66
11255310--11255366	28	2.0	29	89	3	89	56	15	7	21	1.63
11256133--11256304	61	2.8	61	74	5	159	36	6	13	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11260764--11260822	27	2.1	27	84	9	75	67	5	18	8	1.35
11263052--11263110	29	2.0	29	90	0	91	28	11	6	52	1.63
11264544--11264576	15	2.2	15	100	0	66	45	0	0	54	0.99
11264544--11264574	8	4.0	8	91	8	55	48	0	0	51	1.00
11269652--11269679	1	28.0	1	100	0	56	0	0	0	100	0.00
11271234--11271284	15	3.3	15	76	13	50	7	7	3	80	1.01
11272449--11272492	20	2.2	20	87	0	61	70	4	4	20	1.23
11272513--11272557	16	2.8	16	86	3	54	57	2	2	37	1.23
11272583--11272629	19	2.3	20	82	10	60	57	0	6	36	1.24
11272661--11272714	24	2.3	23	78	9	56	66	7	3	22	1.33
11272928--11272992	20	3.3	19	78	8	76	38	4	4	52	1.43
11273054--11273105	17	3.2	16	77	17	54	34	1	1	61	1.18
11273060--11273105	16	2.9	16	84	15	60	34	2	0	63	1.07
11273167--11273239	27	2.7	27	86	2	101	39	1	5	53	1.33
11277187--11277235	21	2.4	20	82	3	62	38	6	12	42	1.67
11278980--11279110	61	2.1	61	83	5	158	32	12	5	49	1.64
11278861--11279185	136	2.4	132	78	8	345	33	10	6	48	1.64
11279204--11279242	15	2.6	15	84	11	53	76	2	0	20	0.90
11280101--11280141	18	2.4	18	80	11	52	75	0	2	21	0.92
11280120--11280205	25	3.4	24	88	7	118	63	1	5	29	1.24
11280101--11280215	25	4.5	25	77	8	106	67	1	4	26	1.18
11280101--11280217	51	2.3	51	80	4	137	68	1	4	25	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11280364--11280409	16	2.8	16	87	12	58	0	10	4	84	0.75
11280365--11280409	18	2.5	18	85	7	56	0	8	4	86	0.69
11280386--11280410	13	1.9	13	100	0	50	0	4	8	88	0.64
11280652--11280700	16	2.7	19	78	15	59	32	0	6	61	1.21
11281846--11282558	59	11.9	58	82	12	799	45	7	12	33	1.71
11281825--11282569	239	3.1	240	91	4	1146	46	7	11	33	1.70
11290896--11290967	37	1.9	38	91	5	121	72	1	13	12	1.20
11290896--11290986	8	11.8	8	82	11	102	71	1	14	13	1.20
11292012--11292666	42	16.0	41	87	8	830	23	18	20	37	1.94
11292012--11292666	79	8.0	82	88	7	894	23	18	20	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91