genome.fa.s201.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  65  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10813267--10813316	12	4.2	12	75	14	50	26	2	0	72	0.96
10813278--10813317	11	3.6	11	83	12	55	30	0	0	70	0.88
10813564--10813613	18	2.8	19	75	22	54	72	6	0	22	1.07
10814882--10815149	110	2.4	110	83	4	353	36	17	21	23	1.95
10815107--10815169	22	2.9	22	82	0	81	28	19	26	25	1.98
10815002--10815389	132	2.9	132	84	4	521	34	18	22	23	1.96
10815250--10815291	22	1.9	22	100	0	84	28	16	28	26	1.97
10815288--10815479	88	2.2	88	87	0	276	36	18	20	25	1.95
10815462--10815503	22	1.9	22	95	0	75	30	16	21	30	1.95
10815947--10815972	9	2.9	9	100	0	52	0	19	0	80	0.71
10817223--10817247	13	1.9	13	100	0	50	12	0	0	88	0.53
10817637--10817717	1	81.0	1	81	0	81	1	3	6	88	0.65
10817637--10817717	19	4.1	19	81	12	99	1	3	6	88	0.65
10817637--10817719	18	4.6	17	82	8	94	1	3	7	87	0.69
10818279--10818331	7	7.4	7	81	12	63	1	11	3	83	0.87
10821429--10821458	2	15.0	2	100	0	60	50	0	0	50	1.00
10821924--10821963	19	2.0	20	90	4	64	35	0	0	65	0.93
10830740--10830791	22	2.5	22	93	6	90	50	0	0	50	1.00
10830797--10830822	5	5.2	5	100	0	52	0	19	57	23	1.40
10831079--10831127	18	2.6	18	87	6	62	22	0	2	75	0.90
10833554--10833626	30	2.4	30	81	4	85	35	8	2	53	1.45
10834042--10834218	90	2.0	90	90	0	282	27	24	9	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10834656--10834713	30	1.9	31	89	3	91	41	5	10	43	1.61
10834669--10834753	34	2.5	34	83	7	93	38	8	11	41	1.72
10839885--10839913	2	14.5	2	100	0	58	51	0	0	48	1.00
10843943--10843976	4	8.5	4	100	0	68	26	0	23	50	1.50
10844094--10844167	23	3.3	23	83	10	82	22	4	1	71	1.10
10844106--10844215	23	4.7	23	72	16	82	22	4	2	70	1.19
10844107--10844167	6	11.2	5	77	16	52	22	3	1	72	1.09
10844106--10844165	29	2.1	27	90	6	93	21	3	1	73	1.07
10844107--10844227	11	11.9	9	69	26	57	22	4	3	70	1.19
10847506--10847530	2	12.5	2	100	0	50	48	0	0	52	1.00
10849540--10849578	21	1.9	20	89	5	60	20	2	2	74	1.06
10849540--10849588	21	2.5	19	83	9	55	22	2	2	73	1.04
10850859--10850938	6	13.5	6	70	10	58	18	2	2	76	1.02
10851055--10851094	11	3.5	12	75	25	50	27	5	5	62	1.37
10851055--10851116	22	3.0	21	82	17	78	24	4	3	67	1.25
10851088--10851147	31	1.9	31	86	6	86	21	3	1	73	1.07
10851672--10851714	14	3.2	14	80	12	54	58	0	41	0	0.98
10851887--10851996	49	2.2	50	95	1	195	17	35	20	27	1.94
10852040--10852182	5	28.2	5	70	20	61	18	4	3	73	1.14
10852092--10852182	6	15.5	6	72	17	66	14	5	2	78	1.03
10852091--10852187	40	2.5	40	80	11	103	14	7	2	76	1.09
10852092--10852177	11	8.2	10	73	18	59	13	5	2	77	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10852025--10852152	17	7.5	17	73	15	68	18	3	3	74	1.11
10852092--10852182	17	5.2	17	78	11	69	14	5	2	78	1.03
10852200--10852581	57	6.7	57	84	3	482	43	7	13	36	1.71
10852201--10852581	115	3.3	113	85	2	505	43	7	13	36	1.71
10856755--10856809	27	2.1	26	89	3	83	58	0	7	34	1.26
10856754--10856909	82	1.9	82	93	0	267	48	2	9	39	1.50
10856834--10856888	27	2.1	26	82	3	65	60	0	10	29	1.31
10856921--10856998	37	2.1	37	95	0	138	43	5	7	43	1.55
10860148--10860183	19	1.9	19	88	5	56	25	0	11	63	1.27
10863575--10863714	63	2.2	63	93	0	244	49	7	17	25	1.72
10867540--10867577	19	2.0	20	84	5	51	78	2	15	2	0.97
10867655--10867697	23	1.9	22	81	13	52	72	0	9	18	1.11
10868030--10868082	10	5.2	10	75	4	52	66	1	0	32	1.03
10868647--10868716	3	24.0	3	91	5	117	32	1	0	65	1.01
10868715--10868740	3	8.7	3	100	0	52	0	0	30	69	0.89
10869518--10869564	24	1.9	24	86	4	67	17	6	0	76	0.98
10869800--10869829	13	2.3	13	100	0	60	86	0	0	13	0.57
10875774--10875822	25	2.0	25	84	8	64	63	0	4	32	1.13
10877036--10877086	21	2.4	21	75	18	52	49	0	5	45	1.26
10877870--10877915	13	3.6	13	76	5	58	13	21	0	65	1.26
10877877--10877926	25	2.0	25	100	0	100	16	20	0	64	1.30
10877879--10877942	25	2.6	25	87	5	76	18	17	1	62	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10879618--10879803	64	2.9	62	76	8	160	34	14	11	39	1.82
10879617--10879812	65	3.1	62	75	16	168	34	13	12	39	1.83
10879617--10879812	62	3.1	61	78	14	159	34	13	12	39	1.83
10882010--10882072	27	2.3	27	100	0	126	12	23	23	39	1.89
10882717--10882777	11	5.4	11	75	11	52	8	8	52	31	1.60
10882728--10882782	17	3.2	18	74	25	64	7	9	50	32	1.61
10882828--10882897	20	3.5	20	75	17	58	15	0	5	78	0.93
10882919--10882951	15	2.1	17	88	11	52	54	0	0	45	0.99
10883308--10883509	102	2.0	102	86	1	280	46	11	18	22	1.82
10883524--10883632	35	2.9	38	76	10	127	49	12	17	20	1.79
10883492--10883934	73	6.2	72	82	5	400	44	14	21	19	1.86
10885021--10885100	9	8.8	9	75	11	65	13	2	2	81	0.90
10885021--10885099	10	7.7	10	71	10	52	12	2	2	82	0.88
10885018--10885098	28	3.0	27	85	8	96	13	3	2	80	0.95
10885030--10885096	18	3.7	17	82	11	80	13	2	2	80	0.94
10894573--10894749	90	2.0	90	90	0	282	27	24	9	38	1.86
10895212--10895284	34	2.1	34	82	5	85	34	10	13	41	1.80
10903431--10903469	21	1.9	20	89	5	60	20	2	2	74	1.06
10903431--10903479	21	2.5	19	83	9	55	22	2	2	73	1.04
10909718--10909763	15	3.1	15	77	0	56	21	2	10	65	1.35
10911409--10911439	3	10.3	3	92	0	53	67	29	0	3	1.06
10912755--10912809	28	1.9	29	85	10	78	65	10	7	16	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10914026--10914060	11	3.2	11	83	0	52	48	17	5	28	1.69
10915090--10915138	21	2.3	22	82	13	66	46	0	0	53	1.00
10915092--10915151	23	2.7	23	80	10	70	50	0	0	50	1.00
10915189--10915234	6	7.7	6	85	9	58	86	10	0	2	0.64
10915164--10915234	30	2.5	27	76	14	70	84	7	1	7	0.83
10915189--10915234	11	4.5	10	81	13	58	86	10	0	2	0.64
10915165--10915234	36	2.0	35	85	2	95	84	7	1	7	0.84
10915886--10915917	8	4.0	8	100	0	64	0	62	0	37	0.95
10916709--10916754	17	2.6	17	80	16	58	47	30	2	19	1.61
10917961--10917994	17	2.0	17	100	0	68	41	5	0	52	1.25
10928110--10928186	18	4.4	17	81	14	79	80	2	3	12	0.95
10928107--10928185	9	8.9	9	74	12	65	81	2	3	12	0.94
10929435--10929540	34	3.1	34	70	8	115	17	28	14	39	1.89
10929526--10929688	38	4.4	38	75	11	144	20	19	14	46	1.84
10929272--10929714	73	6.2	73	84	4	449	19	22	14	43	1.87
10929318--10929714	211	1.9	211	82	3	501	19	22	14	44	1.86
10929393--10929712	35	9.0	35	69	9	191	19	21	14	44	1.86
10929722--10929919	102	1.9	102	84	2	263	23	20	10	45	1.81
10930321--10930347	14	1.9	14	100	0	54	74	3	0	22	0.98
10930349--10930378	9	3.4	9	95	4	53	83	16	0	0	0.65
10930330--10930397	19	3.6	19	76	9	59	80	8	0	10	0.89
10930330--10930412	35	2.3	36	82	14	91	80	8	2	8	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10930330--10930412	43	1.9	43	82	4	105	80	8	2	8	0.98
10930445--10930509	11	5.8	11	75	13	62	27	55	9	7	1.59
10933392--10933522	64	2.1	63	83	12	162	39	13	12	33	1.83
10933400--10933533	63	2.1	63	81	9	157	43	12	12	31	1.80
10933417--10933588	65	2.7	62	76	7	159	38	12	13	34	1.84
10935278--10935327	25	2.0	25	100	0	100	64	0	20	16	1.30
10935289--10935334	13	3.6	13	76	5	58	65	0	21	13	1.26
10943430--10943467	6	6.3	6	82	11	51	15	0	0	84	0.63
10943440--10943468	13	2.2	13	100	0	58	13	0	0	86	0.58
10943695--10943745	24	2.2	23	83	16	61	68	3	5	21	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91