genome.fa.s201.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  34  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5810521--5810576	22	2.6	23	75	18	57	35	14	14	35	1.86
5812268--5812302	16	2.2	16	89	0	52	0	17	0	82	0.66
5814466--5814531	23	3.0	23	70	14	66	63	10	3	22	1.40
5814467--5814537	22	3.2	22	71	15	74	63	11	2	22	1.40
5816043--5816088	23	2.0	23	100	0	92	21	13	17	47	1.81
5817551--5817576	8	3.2	8	100	0	52	23	0	23	53	1.46
5819718--5819776	30	2.0	30	83	6	75	37	18	6	37	1.78
5820453--5820502	22	2.3	22	89	0	73	34	10	18	38	1.84
5820511--5820576	22	2.7	24	73	20	64	33	6	13	46	1.68
5822128--5825104	852	3.5	834	77	8	2689	34	23	8	33	1.86
5829819--5829866	15	3.4	15	72	16	57	8	14	29	47	1.73
5829815--5829876	27	2.3	27	94	0	115	9	14	30	45	1.77
5829827--5829872	15	3.3	15	70	17	53	13	10	30	45	1.77
5834394--5834463	18	3.9	18	75	7	70	1	41	8	48	1.42
5834944--5834974	2	15.5	2	100	0	62	0	48	0	51	1.00
5835860--5835917	25	2.4	24	77	22	68	62	1	0	36	1.06
5836546--5836613	28	2.6	25	76	15	68	48	0	1	50	1.10
5840851--5840899	24	1.9	27	84	12	68	40	0	2	57	1.10
5840861--5840909	22	2.1	24	81	7	57	42	0	2	55	1.11
5841212--5841253	21	2.0	21	86	9	59	66	9	0	23	1.21
5844844--5844998	17	8.7	18	68	23	87	47	14	11	26	1.79
5844844--5844918	35	2.2	34	83	7	89	46	16	10	26	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5844926--5845007	37	2.2	36	85	8	112	48	14	13	23	1.79
5844926--5845007	18	4.5	19	72	13	73	48	14	13	23	1.79
5853354--5853405	15	3.4	15	84	5	59	69	7	3	19	1.29
5853363--5853400	20	1.9	20	89	10	60	68	10	5	15	1.36
5853418--5853450	17	1.9	17	88	11	50	78	3	6	12	1.04
5854649--5854708	21	2.6	22	79	15	59	53	1	0	45	1.10
5855019--5855081	10	7.0	9	73	20	60	74	3	3	19	1.09
5855508--5855547	21	1.9	21	89	0	62	37	7	2	52	1.43
5857328--5857721	197	2.0	197	95	1	718	31	9	16	42	1.81
5861224--5861347	62	2.0	62	96	0	230	47	3	18	30	1.64
5862185--5862251	14	4.6	15	71	16	52	35	13	0	50	1.42
5862685--5862735	25	2.0	25	88	3	75	52	0	0	47	1.00
5864810--5865048	119	2.0	119	95	0	433	28	16	23	31	1.96
5865186--5865240	21	2.4	23	82	14	62	32	3	0	63	1.12
5865858--5866122	70	3.7	70	73	9	205	47	8	7	35	1.63
5865858--5866081	69	3.2	71	74	12	217	48	8	8	34	1.63
5866036--5866347	110	2.7	111	80	6	290	46	5	10	38	1.60
5866195--5866278	41	2.1	40	88	6	125	45	3	16	34	1.65
5866366--5866438	37	2.0	37	86	5	103	46	6	1	45	1.38
5866972--5867032	26	2.5	25	79	10	72	55	8	4	31	1.50
5867023--5867087	29	2.2	28	81	10	69	63	9	1	26	1.34
5867083--5867124	11	3.8	11	90	0	57	52	21	9	16	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5868123--5868160	19	2.0	19	89	0	58	52	0	0	47	1.00
5870738--5870780	17	2.6	17	81	3	52	55	0	4	39	1.20
5872355--5872380	2	13.0	2	100	0	52	50	50	0	0	1.00
5872869--5873166	22	13.7	22	71	12	111	46	3	11	38	1.58
5872881--5872961	41	2.0	40	85	7	110	48	6	8	37	1.59
5872932--5873078	44	3.4	43	83	5	163	44	4	12	38	1.62
5873019--5873175	44	3.6	43	79	5	136	49	3	10	37	1.53
5873381--5873505	21	6.0	21	74	8	103	46	5	12	35	1.66
5873391--5873521	43	3.0	44	77	7	126	44	5	13	36	1.67
5873820--5873870	22	2.3	22	89	0	75	49	11	1	37	1.51
5873830--5873886	22	2.6	22	88	0	78	47	12	5	35	1.64
5874278--5874359	22	3.8	21	81	3	74	50	4	8	36	1.55
5874389--5874750	22	16.2	22	68	13	89	45	5	9	39	1.60
5874390--5874562	65	2.6	65	79	10	192	46	6	10	35	1.65
5874389--5874591	44	4.7	44	72	10	132	46	6	10	36	1.64
5874617--5874750	44	3.0	43	75	10	119	45	4	8	41	1.54
5874672--5874767	22	4.4	21	77	7	75	44	4	9	41	1.56
5879467--5879642	74	2.4	75	83	6	225	33	22	19	23	1.97
5881265--5881289	9	2.8	9	100	0	50	36	8	36	20	1.82
5884194--5884235	20	2.1	20	86	0	57	33	26	14	26	1.94
5885794--5885818	13	1.9	13	100	0	50	8	8	28	56	1.57
5886319--5886372	20	2.6	21	94	5	101	33	29	22	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5886560--5886610	19	2.6	20	87	6	77	27	21	23	27	1.99
5886579--5886757	74	2.4	76	79	5	199	36	18	18	25	1.94
5887330--5887363	14	2.3	15	85	10	52	26	11	14	47	1.79
5899244--5899284	9	4.3	9	85	11	55	26	0	14	58	1.37
5899244--5899284	20	2.2	18	86	8	55	26	0	14	58	1.37
5902592--5902672	33	2.4	33	79	6	81	48	29	0	22	1.51
5902615--5902686	26	2.7	26	79	10	83	47	34	0	18	1.49
5902586--5902754	13	13.2	12	69	18	67	45	34	1	18	1.58
5902622--5902743	19	6.2	20	76	10	101	44	35	1	18	1.60
5902660--5902777	50	2.4	51	81	7	127	42	39	2	15	1.60
5902622--5902778	7	24.4	7	68	19	74	43	37	1	16	1.59
5902836--5902903	35	1.9	35	82	5	84	32	10	5	51	1.60
5904005--5904038	2	17.0	2	93	0	59	47	0	0	52	1.00
5906834--5906863	3	10.3	3	92	7	53	66	0	33	0	0.92
5907486--5907587	36	2.8	36	93	0	177	12	13	30	43	1.82
5911954--5912011	29	2.0	29	96	0	107	37	18	13	29	1.90
5913977--5914005	2	14.5	2	100	0	58	51	0	0	48	1.00
5915270--5915313	10	4.1	11	83	13	56	25	4	0	70	1.06
5915268--5915302	12	3.1	12	84	16	56	22	5	0	71	1.07
5915723--5915776	3	18.0	3	100	0	108	33	0	0	66	0.92
5918088--5918543	226	2.0	231	90	8	729	30	20	15	32	1.94
5924626--5924667	22	1.9	22	90	0	66	33	9	16	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5927455--5927494	6	6.7	6	88	0	53	0	0	15	85	0.61
5929462--5929515	28	1.9	28	84	0	72	55	14	5	24	1.61
5930522--5930562	13	3.1	14	86	6	50	70	2	19	7	1.22
5931562--5931596	7	5.0	7	89	0	52	45	31	0	22	1.53
5931566--5931644	14	5.6	14	69	10	54	48	32	5	13	1.65
5931566--5931648	21	3.9	21	79	3	94	48	32	4	14	1.65
5933324--5933371	13	3.7	13	80	0	60	85	10	0	4	0.73
5933325--5933403	6	13.7	6	78	7	58	79	15	1	3	0.93
5933595--5933674	38	2.1	38	86	4	108	36	13	10	40	1.79
5939400--5939564	8	20.6	8	74	4	100	19	1	29	50	1.55
5939400--5939563	24	6.8	24	75	7	145	19	1	29	50	1.56
5939648--5939684	3	12.0	3	94	5	65	35	0	0	64	0.94
5943166--5943358	70	2.8	70	77	6	185	47	11	21	19	1.81
5943175--5943390	70	3.1	70	77	4	177	47	11	20	20	1.81
5943326--5943481	70	2.2	69	79	1	159	47	12	21	17	1.81
5943430--5943620	105	1.8	104	82	1	247	49	11	20	17	1.78
5943824--5943975	69	2.2	70	82	7	184	48	15	19	16	1.82
5945133--5945331	23	8.9	23	73	9	117	29	15	24	30	1.95
5945569--5945629	13	4.9	13	73	17	58	0	16	4	78	0.91
5945570--5945633	7	8.6	7	75	24	60	0	14	4	81	0.85
5945573--5945634	22	2.7	22	95	5	106	0	14	4	80	0.87
5945565--5945637	15	4.7	15	73	20	62	0	16	4	79	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5946153--5946179	12	2.2	12	100	0	54	22	22	14	40	1.90
5952520--5952569	3	16.7	3	100	0	100	34	0	0	66	0.92
5955730--5955764	14	2.5	14	86	13	54	82	0	17	0	0.66
5957200--5957295	9	9.6	9	72	20	66	56	3	1	39	1.22
5957200--5957244	20	2.2	20	88	7	65	55	2	2	40	1.24
5957209--5957295	31	2.8	30	77	14	95	56	2	1	40	1.19
5957222--5957264	20	2.2	19	83	4	50	55	4	2	37	1.33
5957221--5957302	11	7.7	11	70	19	59	56	2	2	39	1.26
5958370--5958420	26	2.0	26	84	7	68	29	0	5	64	1.17
5958408--5958435	8	3.5	8	100	0	56	32	0	10	57	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91