genome.fa.s201.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  60  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9969222--9969255	10	3.6	9	88	11	50	64	11	2	20	1.39
9969301--9969358	19	3.0	19	79	2	62	44	0	5	50	1.24
9969303--9969368	20	3.3	20	78	6	71	39	1	6	53	1.35
9969560--9969625	10	6.5	10	78	15	64	33	1	4	60	1.26
9969506--9969617	9	12.0	9	65	17	50	34	2	2	59	1.25
9973937--9973975	20	2.0	20	89	0	60	25	12	17	43	1.85
9973938--9973983	20	2.3	20	85	3	58	28	15	15	41	1.87
9974140--9974180	21	1.9	22	85	5	57	36	2	0	60	1.10
9974130--9974194	29	2.2	29	78	5	69	30	3	1	64	1.18
9974196--9974267	37	2.0	36	88	2	108	38	5	4	51	1.45
9974203--9974268	18	3.6	18	70	11	62	39	6	3	51	1.42
9978010--9978037	5	5.6	5	100	0	56	64	0	0	35	0.94
9984821--9984850	15	1.9	16	93	6	53	30	0	40	30	1.57
9990481--9990645	80	2.1	80	90	1	260	32	6	5	56	1.47
9991973--9992012	20	2.0	20	90	4	64	52	0	0	47	1.00
9995745--9995787	22	1.9	23	85	4	61	48	9	0	41	1.35
9996805--9996854	23	2.2	23	86	10	68	10	2	10	78	1.06
9996806--9996870	12	6.3	10	73	16	53	10	1	10	76	1.08
9996832--9996918	29	3.0	28	73	11	86	16	1	11	71	1.21
9996814--9996908	39	2.7	34	82	11	111	15	2	9	72	1.19
9996837--9996948	48	2.3	48	86	7	156	17	1	10	69	1.26
9997387--9997957	35	15.9	35	74	8	477	43	14	22	19	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9997360--9997957	73	8.3	73	89	2	926	43	14	22	19	1.87
9997360--9997954	289	2.1	285	91	3	960	43	14	23	19	1.87
9997360--9998123	35	21.2	35	72	9	466	42	13	23	19	1.87
9997387--9998062	108	6.3	108	73	11	438	42	14	23	19	1.88
9997387--9998133	181	4.1	181	75	10	557	42	13	23	19	1.87
9997960--9998131	73	2.3	74	84	4	224	40	11	26	20	1.87
9999121--9999216	1	96.0	1	73	0	66	8	3	3	85	0.81
9999120--9999216	9	10.9	9	80	9	110	9	3	3	84	0.83
9999131--9999215	17	4.9	16	82	12	98	9	1	3	85	0.76
9999133--9999216	44	1.9	43	90	4	125	9	1	3	85	0.76
10010902--10010944	22	1.9	23	85	4	61	48	9	0	41	1.35
10011981--10012033	23	2.3	23	84	9	74	11	1	9	77	1.07
10011985--10012104	9	12.3	10	68	21	60	13	1	10	75	1.13
10011985--10012112	17	7.2	16	73	20	64	13	2	10	74	1.17
10012003--10012087	39	2.4	35	88	11	120	14	1	11	72	1.17
10012011--10012144	55	2.4	56	88	8	200	16	1	9	72	1.18
10013888--10013937	20	2.4	21	80	9	59	44	6	8	42	1.58
10014760--10014787	11	2.5	11	100	0	56	0	7	0	92	0.37
10022599--10022632	17	2.0	17	94	0	59	61	0	5	32	1.20
10022965--10023013	18	2.6	19	81	15	66	40	6	10	42	1.63
10026841--10026876	8	4.6	8	86	6	56	58	0	0	41	0.98
10026834--10026876	23	2.0	21	90	9	68	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10026932--10026975	19	2.3	20	85	14	58	36	4	4	54	1.41
10027168--10027227	19	3.2	19	73	17	61	33	5	3	58	1.36
10031361--10031434	20	3.7	20	73	20	73	63	4	27	5	1.34
10031362--10031398	17	2.2	18	90	9	60	64	5	24	5	1.36
10033916--10033947	16	2.0	16	93	0	55	53	0	21	25	1.46
10035576--10035630	28	1.9	28	85	3	74	36	3	0	60	1.15
10043039--10043186	73	2.0	73	92	2	244	32	8	16	43	1.77
10056773--10056800	10	2.8	10	100	0	56	21	21	28	28	1.99
10073156--10073186	3	10.3	3	100	0	62	0	35	0	64	0.94
10073901--10073926	9	2.9	9	100	0	52	7	0	0	92	0.39
10077919--10077969	23	2.2	23	92	0	84	56	0	3	39	1.18
10077961--10078008	14	3.5	13	75	8	51	60	0	2	37	1.09
10080536--10080592	22	2.5	24	73	21	61	56	0	0	43	0.99
10085588--10085619	15	2.1	15	94	0	55	56	3	0	40	1.15
10085860--10085967	43	2.5	42	80	10	103	47	3	0	48	1.26
10086498--10086541	24	2.0	22	82	13	54	38	11	2	47	1.52
10100267--10100396	64	2.0	64	84	8	167	23	23	13	39	1.91
10101117--10101152	16	2.3	16	90	4	56	66	0	0	33	0.92
10101140--10101174	19	1.9	18	88	11	54	71	0	2	25	1.00
10101448--10101512	27	2.4	26	80	7	76	44	1	3	50	1.26
10101693--10101738	20	2.3	20	80	0	56	39	10	13	36	1.79
10111965--10112062	49	2.0	49	97	0	187	45	10	11	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10112948--10113095	22	6.5	22	68	13	77	39	10	8	41	1.68
10113036--10113106	22	3.2	22	76	5	72	36	11	8	43	1.71
10113324--10113458	22	6.1	22	75	6	94	40	4	8	45	1.55
10113891--10113992	22	4.7	21	83	8	80	30	12	9	47	1.74
10113909--10114081	44	4.0	43	83	6	181	34	6	9	49	1.63
10113963--10114038	11	7.0	10	71	14	53	36	2	9	51	1.48
10113909--10114081	22	7.9	22	81	8	151	34	6	9	49	1.63
10114094--10114236	22	6.5	22	72	6	101	39	12	4	42	1.64
10114137--10114235	44	2.2	45	83	5	139	37	11	6	45	1.65
10114328--10114365	19	2.0	20	94	5	69	42	10	0	47	1.38
10114405--10114464	21	2.8	21	82	2	66	36	11	6	45	1.67
10114383--10114464	22	3.8	22	75	3	67	36	12	6	45	1.67
10114487--10114552	22	3.0	22	77	0	69	33	6	7	53	1.54
10114651--10114701	21	2.5	19	79	17	57	31	0	7	60	1.25
10114708--10114749	22	1.9	22	85	9	59	42	7	0	50	1.30
10114994--10115181	93	2.0	93	88	0	277	48	6	13	31	1.67
10115177--10115523	22	16.2	22	69	16	140	34	8	5	51	1.57
10116521--10116559	16	2.4	16	95	0	69	43	23	0	33	1.54
10125367--10125407	16	2.5	17	81	18	52	63	0	2	34	1.08
10125692--10125739	24	2.0	24	84	8	62	37	2	6	54	1.38
10126002--10126880	447	1.9	451	89	5	1364	45	7	9	36	1.65
10126646--10126935	151	1.9	150	83	4	377	46	7	5	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10130025--10130056	15	2.1	15	94	0	55	40	21	15	21	1.91
10140766--10140799	11	3.1	11	100	0	68	44	0	8	47	1.34
10144921--10144960	21	1.9	21	84	0	53	50	2	2	45	1.28
10145739--10145800	30	2.1	30	84	0	79	30	20	14	33	1.93
10147461--10147489	14	2.1	14	93	6	51	58	0	0	41	0.98
10147541--10147570	12	2.6	11	94	5	51	46	0	0	53	1.00
10147763--10147858	8	11.9	8	71	14	54	59	3	1	36	1.20
10147764--10147839	2	38.5	2	81	7	66	59	0	1	39	1.06
10148054--10148101	21	2.3	20	83	13	62	35	2	4	58	1.29
10152768--10152814	2	23.5	2	91	0	76	46	0	4	48	1.21
10158213--10158255	21	2.0	22	86	8	63	65	0	4	30	1.13
10164525--10164657	61	2.2	62	86	1	187	40	6	6	45	1.57
10164755--10164793	20	2.0	20	89	0	60	25	0	15	58	1.37
10164798--10164953	62	2.5	62	88	3	242	44	12	6	37	1.68
10165373--10165506	60	2.2	62	84	5	175	41	9	8	41	1.68
10165397--10165532	62	2.2	60	82	2	164	41	6	8	43	1.60
10165135--10166805	323	5.2	323	77	10	1423	37	7	10	43	1.68
10165697--10165829	60	2.2	61	87	1	196	40	10	7	41	1.68
10166015--10166175	61	2.6	62	79	2	180	40	7	6	45	1.59
10166344--10166492	62	2.4	62	86	3	194	44	4	5	45	1.47
10166809--10166863	24	2.2	25	80	3	67	41	3	3	50	1.37
10167576--10167617	21	2.0	21	86	13	59	47	0	2	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10167816--10167856	20	2.0	21	85	4	57	29	7	12	51	1.66
10167882--10168023	58	2.5	57	76	14	141	42	5	7	45	1.55
10167999--10168041	14	3.1	14	84	15	54	41	0	2	55	1.12
10167853--10168644	120	6.6	119	73	13	525	41	8	6	44	1.59
10167847--10168429	182	3.2	181	79	7	524	41	7	6	44	1.58
10168315--10168344	14	2.1	15	93	6	53	40	0	0	60	0.97
10168039--10168354	119	2.6	122	77	5	334	41	7	6	45	1.56
10168604--10168646	14	3.1	14	84	15	54	41	0	0	58	0.98
10169492--10169543	21	2.5	21	79	11	54	26	30	26	15	1.96
10173786--10173820	16	2.2	16	94	0	61	31	14	11	42	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91