genome.fa.s201.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  16  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2847229--2847268	17	2.4	17	87	4	55	35	7	10	47	1.65
2847773--2847825	26	2.0	26	85	7	72	52	1	3	41	1.30
2850402--2850501	34	3.2	33	66	28	90	46	1	6	47	1.34
2850394--2850508	61	1.9	61	98	0	221	46	0	5	47	1.31
2850399--2850496	28	3.3	28	67	22	74	44	1	6	47	1.34
2853489--2853519	11	2.8	11	100	0	62	38	19	9	32	1.84
2853666--2854683	349	2.9	349	97	0	1928	37	29	9	23	1.86
2854605--2854739	65	2.1	65	92	0	225	30	34	8	25	1.87
2854871--2854991	52	2.3	52	81	5	145	31	21	4	42	1.74
2854921--2855070	75	2.0	75	96	2	275	32	22	4	41	1.72
2855186--2855302	52	2.2	52	81	0	153	29	20	5	44	1.75
2857654--2857683	15	1.9	16	93	6	53	50	16	0	33	1.46
2862015--2862045	15	2.0	16	93	6	55	83	9	6	0	0.79
2862550--2862574	12	2.1	12	100	0	50	24	24	24	28	2.00
2864523--2864552	13	2.4	12	89	10	51	83	0	3	13	0.77
2864617--2864678	31	2.1	30	82	11	74	79	1	14	4	0.98
2868156--2868194	19	2.1	19	85	9	53	41	2	0	56	1.13
2872570--2872719	72	2.1	72	93	0	264	40	36	14	9	1.78
2872973--2873023	26	2.0	26	88	0	75	29	11	7	50	1.67
2873116--2873141	2	13.0	2	100	0	52	50	0	0	50	1.00
2873265--2873307	21	2.0	21	86	0	59	9	23	13	53	1.69
2875746--2875858	58	1.9	58	81	0	136	38	18	4	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2875884--2875953	35	2.0	35	83	8	88	40	8	2	48	1.49
2878667--2878768	32	3.1	32	71	8	89	47	2	2	47	1.32
2887913--2887971	28	2.1	30	87	9	88	55	3	1	38	1.26
2887936--2888030	31	3.0	32	81	6	86	51	4	3	41	1.37
2888266--2888341	32	2.4	31	79	12	84	36	2	9	51	1.48
2891136--2891225	30	2.9	32	85	8	100	43	0	3	53	1.17
2891154--2891225	30	2.5	30	88	4	112	41	0	4	54	1.20
2892397--2892431	2	17.5	2	100	0	70	48	0	0	51	1.00
2892630--2892700	32	2.3	31	85	4	99	64	1	2	30	1.16
2892570--2892769	104	1.9	107	88	3	307	60	3	6	30	1.38
2898430--2898503	36	2.1	36	97	0	139	22	33	17	25	1.96
2899864--2900093	54	4.3	54	81	4	248	37	33	16	11	1.86
2899864--2900093	108	2.1	108	86	3	311	37	33	16	11	1.86
2900086--2900273	57	3.5	56	68	19	166	36	30	18	14	1.90
2900026--2900432	102	3.9	102	87	4	494	38	31	17	12	1.87
2900191--2900273	27	3.0	27	72	16	78	34	30	18	16	1.93
2900334--2900363	9	3.3	9	95	0	51	36	46	10	6	1.64
2900232--2900448	111	2.0	111	88	1	328	39	31	16	12	1.85
2900407--2900471	27	2.4	27	84	0	85	35	30	16	16	1.92
2902849--2902906	31	1.9	29	86	6	80	50	3	0	46	1.18
2904773--2904801	10	2.7	11	89	10	51	72	0	0	27	0.85
2908508--2908621	22	5.2	22	75	8	81	51	5	7	35	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2908719--2908761	22	1.9	23	86	13	63	55	4	11	27	1.55
2908771--2908830	22	2.7	22	84	0	84	46	10	8	35	1.67
2909301--2909393	22	4.2	22	70	10	64	51	6	4	37	1.47
2909546--2909583	19	2.0	20	89	5	60	50	2	5	42	1.39
2909726--2909786	22	2.8	22	75	9	61	47	8	9	34	1.66
2909768--2909834	22	3.0	22	80	0	80	40	2	11	44	1.56
2909725--2909834	44	2.5	44	80	2	105	43	5	11	39	1.64
2909831--2910022	22	8.8	22	76	6	140	47	6	6	39	1.54
2909840--2909982	66	2.2	66	81	5	155	48	6	4	39	1.52
2909988--2910033	22	2.1	21	88	4	65	54	4	8	32	1.51
2910428--2910651	66	3.4	66	79	7	215	47	8	5	38	1.57
2910412--2910651	44	5.5	44	74	5	146	47	8	5	38	1.58
2910257--2910624	22	17.0	22	69	11	129	46	8	8	36	1.64
2910740--2910876	61	2.2	61	96	0	247	43	8	10	38	1.68
2910740--2910831	28	3.1	28	63	19	69	45	7	10	35	1.68
2910751--2910843	28	3.1	28	63	19	71	44	7	10	37	1.68
2910901--2910952	23	2.3	23	90	3	79	50	13	3	32	1.60
2912555--2912594	21	2.0	20	90	5	62	82	0	7	10	0.84
2914086--2914111	2	13.0	2	100	0	52	50	0	0	50	1.00
2916710--2917062	170	2.1	169	80	3	388	44	21	11	22	1.84
2916710--2917063	85	4.2	84	77	5	309	44	21	11	22	1.84
2917447--2917563	62	1.9	62	80	0	135	36	18	11	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2920387--2920625	61	4.0	58	80	9	275	36	12	6	45	1.67
2920392--2920610	119	1.8	118	85	6	307	36	12	5	45	1.66
2920538--2920684	74	2.0	74	88	6	217	37	9	5	47	1.59
2920613--2920796	58	3.1	58	82	10	203	38	10	4	45	1.61
2920497--2920761	135	2.0	139	87	8	395	36	10	4	47	1.60
2920633--2920833	63	3.3	60	80	13	225	37	9	5	47	1.59
2921360--2921393	12	2.9	12	86	4	52	55	14	0	29	1.40
2921669--2921808	10	14.1	9	69	21	59	75	2	1	20	1.02
2921679--2921799	3	40.7	3	73	15	65	73	2	1	22	1.04
2921664--2921808	26	5.5	25	71	19	100	74	3	1	20	1.04
2921691--2921809	31	3.7	31	72	15	89	74	2	1	21	1.02
2921679--2921806	6	20.3	6	73	15	82	74	2	1	21	1.02
2932851--2932884	16	2.1	16	88	0	50	82	0	11	5	0.83
2933017--2933243	63	3.8	59	81	10	223	37	14	4	43	1.66
2933010--2933242	118	2.0	118	81	9	278	36	14	4	44	1.66
2933001--2933270	63	4.5	60	76	12	209	36	12	4	46	1.62
2934152--2934280	3	43.7	3	72	17	65	72	2	2	22	1.07
2934149--2934288	28	4.8	29	73	19	121	73	2	2	22	1.05
2934150--2934289	57	2.4	57	81	6	167	73	2	2	22	1.05
2935612--2935642	14	2.2	14	94	0	53	29	9	6	54	1.57
2936648--2936725	23	3.3	23	74	15	70	52	1	2	43	1.23
2936693--2936755	18	3.6	18	74	20	60	61	1	0	36	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2936693--2936777	16	4.9	17	71	18	59	57	1	1	40	1.14
2936690--2936809	35	3.6	34	73	15	85	52	1	1	44	1.21
2936760--2936835	30	2.4	32	86	6	102	43	1	3	51	1.28
2936754--2936826	30	2.5	30	93	2	121	41	1	4	53	1.28
2938952--2939135	54	3.4	54	80	4	219	39	33	15	11	1.84
2938951--2939565	102	6.0	107	82	6	390	39	32	16	12	1.86
2939068--2939565	102	4.9	102	89	2	712	38	31	16	13	1.86
2939182--2939462	45	5.7	45	66	24	140	39	30	16	12	1.86
2939233--2939315	27	3.0	27	75	13	78	32	31	18	18	1.94
2939229--2939417	57	3.6	55	67	22	143	37	31	16	14	1.90
2939068--2939619	306	1.8	303	87	2	820	38	31	16	13	1.87
2939542--2939633	27	3.4	27	83	3	114	38	28	16	17	1.91
2942915--2942956	5	8.4	5	82	17	52	80	0	0	19	0.70
2942915--2942957	16	2.8	15	86	13	61	79	0	0	20	0.74
2943147--2943947	46	16.9	47	81	9	715	37	23	11	27	1.89
2943141--2943943	94	8.5	93	83	7	895	37	23	11	27	1.89
2963769--2963799	11	2.8	11	90	0	53	12	3	0	83	0.75
2964535--2964804	49	5.6	49	84	2	339	39	16	11	31	1.85
2964533--2964831	146	2.0	146	84	2	386	38	17	11	33	1.84
2964535--2964831	97	3.1	97	83	4	357	39	16	11	32	1.84
2975145--2975503	161	2.2	161	80	5	404	32	10	14	42	1.80
2977180--2977228	19	2.6	19	80	0	71	30	12	26	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2979226--2979283	3	19.3	3	100	0	116	67	0	0	32	0.91
2979279--2979318	4	10.0	4	83	0	53	75	7	0	17	1.03
2979282--2979318	8	4.6	8	96	0	65	75	8	0	16	1.02
2981706--2981739	17	1.9	18	88	5	52	47	20	0	32	1.51
2982471--2982557	35	2.5	35	77	14	83	56	1	0	42	1.07
2984727--2984912	55	3.4	54	78	8	187	39	32	16	11	1.84
2984860--2985426	45	11.6	45	64	19	178	38	30	16	13	1.88
2984845--2985523	102	6.9	102	87	6	873	37	31	16	13	1.89
2984961--2985523	93	5.8	94	88	5	679	38	30	17	14	1.89
2985005--2985249	48	5.2	47	64	17	150	35	31	18	15	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91