genome.fa.s201.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  82  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13816429--13816587	77	2.1	76	80	11	182	28	1	3	66	1.20
13817514--13817575	6	10.5	6	80	13	58	14	4	0	80	0.87
13817514--13817610	32	3.1	29	81	16	90	15	6	2	76	1.08
13817625--13818085	59	7.7	59	83	8	567	47	6	13	32	1.69
13819203--13819257	29	1.9	29	88	3	85	45	0	3	50	1.19
13819202--13819280	28	2.8	28	81	7	81	45	0	2	51	1.14
13821276--13821309	12	2.8	12	95	0	59	50	5	0	44	1.26
13821276--13821309	2	17.0	2	87	0	50	50	5	0	44	1.26
13832423--13832594	89	1.9	90	92	3	294	46	8	4	40	1.54
13836376--13836403	2	14.0	2	100	0	56	50	0	0	50	1.00
13836917--13836971	29	1.9	29	88	3	85	45	0	3	50	1.19
13839657--13839708	22	2.5	21	78	9	61	25	7	19	48	1.75
13844577--13844621	22	2.0	22	100	0	90	42	22	4	31	1.73
13850231--13850279	22	2.2	22	88	3	71	57	2	10	30	1.43
13850238--13850281	22	2.0	22	100	0	88	54	0	13	31	1.39
13853498--13853535	15	2.5	15	95	0	67	50	0	7	42	1.31
13854485--13854543	20	3.0	20	92	0	91	20	30	27	22	1.98
13855207--13855265	31	1.9	31	96	0	109	23	28	23	23	1.99
13855319--13855362	19	2.3	19	84	4	52	31	29	22	15	1.95
13855610--13855651	14	3.1	15	80	19	56	7	42	21	28	1.79
13855610--13855646	13	2.7	14	80	20	51	8	43	24	24	1.81
13855698--13855777	17	4.9	16	69	13	56	8	5	6	80	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13855698--13855725	1	28.0	1	100	0	56	0	0	0	100	0.00
13855775--13856077	156	1.9	156	94	0	534	29	14	17	37	1.90
13858744--13858793	23	2.2	23	96	0	91	38	12	20	30	1.88
13859132--13859174	22	2.0	22	100	0	86	41	25	4	27	1.75
13859897--13859933	2	18.5	2	94	0	65	48	2	0	48	1.15
13860513--13860573	25	2.5	24	76	12	61	52	6	3	37	1.44
13861132--13861204	24	3.0	24	69	18	60	50	0	2	46	1.15
13861310--13861350	20	2.0	20	100	0	82	29	19	14	36	1.92
13870528--13870588	25	2.4	25	78	8	70	57	3	0	39	1.15
13870716--13870894	51	3.4	53	72	20	160	41	15	1	41	1.54
13870717--13870867	52	2.9	50	76	11	128	41	14	0	43	1.50
13870716--13870894	55	3.4	54	74	13	149	41	15	1	41	1.54
13870910--13871039	58	2.2	59	82	10	160	43	17	2	36	1.62
13871414--13871718	129	2.4	128	81	6	339	42	10	6	40	1.64
13878401--13878431	15	2.1	15	94	5	55	48	19	25	6	1.72
13879974--13880025	21	2.5	21	90	6	79	46	0	1	51	1.12
13880015--13880051	8	4.6	8	86	0	56	56	0	0	43	0.99
13880015--13880079	26	2.6	24	79	9	67	61	0	0	38	0.96
13884581--13884632	22	2.5	21	78	9	61	26	9	17	46	1.79
13889975--13890037	6	10.0	6	80	10	54	15	63	0	20	1.31
13894110--13894134	12	2.1	12	100	0	50	52	24	8	16	1.70
13894662--13894690	14	2.1	14	100	0	58	58	0	13	27	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13895191--13895239	18	2.5	20	75	18	50	32	4	8	55	1.48
13901624--13901663	21	1.9	21	89	0	62	50	0	0	50	1.00
13902111--13902755	341	1.9	337	88	5	987	40	13	6	39	1.71
13902831--13902872	22	1.9	22	85	9	59	42	2	0	54	1.13
13902794--13903139	129	2.7	126	79	5	365	43	8	5	41	1.60
13903668--13903729	33	1.9	31	84	12	81	61	0	0	38	0.96
13906644--13906695	22	2.5	21	81	9	70	28	5	17	48	1.70
13910500--13910528	14	2.1	14	100	0	58	34	13	31	20	1.92
13912060--13912129	6	11.2	6	80	8	68	17	62	0	20	1.32
13912277--13912320	22	2.0	22	95	0	79	43	13	11	31	1.80
13915968--13916062	23	4.1	23	86	4	111	42	16	24	16	1.89
13915969--13916053	23	3.6	23	88	3	116	41	18	25	14	1.88
13916202--13916245	22	2.0	22	95	0	79	43	13	11	31	1.80
13926714--13926780	22	3.0	22	84	2	80	53	1	1	43	1.19
13926715--13926801	18	4.9	17	73	20	63	54	2	1	42	1.20
13926713--13926815	19	5.5	19	72	15	88	54	1	0	42	1.18
13926753--13926821	35	1.9	35	88	2	102	57	4	0	37	1.18
13926858--13926895	19	2.0	19	85	10	51	47	2	0	50	1.15
13926900--13926940	16	2.5	17	80	11	50	41	0	0	58	0.98
13926907--13926940	16	2.2	16	89	5	52	41	0	0	58	0.98
13926917--13926980	26	2.5	26	87	5	87	48	1	0	50	1.10
13927103--13927133	14	2.2	14	100	0	62	45	6	0	48	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13930869--13931256	191	2.0	194	96	1	719	43	9	22	25	1.82
13932130--13932159	15	2.0	15	93	0	51	43	0	23	33	1.54
13932428--13932469	17	2.5	17	92	0	66	33	11	0	54	1.37
13934758--13934792	15	2.2	16	95	5	63	31	0	0	68	0.90
13935020--13935062	22	1.9	22	86	13	61	53	6	0	39	1.28
13951028--13951406	200	1.9	199	81	6	462	37	9	9	43	1.70
13954295--13954338	22	2.0	22	95	0	79	31	11	13	43	1.80
13954487--13954571	23	3.6	23	87	4	116	14	25	18	41	1.88
13958331--13958378	25	2.0	24	83	4	60	54	2	0	43	1.12
13958509--13958658	51	2.9	49	76	14	126	42	14	0	43	1.49
13958586--13958685	54	1.9	51	82	10	121	43	15	1	41	1.53
13958701--13958814	58	1.9	62	85	10	166	42	15	2	39	1.61
13958701--13958831	58	2.2	60	82	11	155	43	16	3	37	1.63
13959207--13959534	129	2.6	128	80	7	346	42	10	6	40	1.65
13961113--13961187	39	1.9	39	81	10	91	44	16	8	32	1.76
13961337--13961381	21	2.1	21	88	8	65	40	0	0	60	0.97
13966800--13966867	15	4.6	15	77	12	61	33	2	1	61	1.20
13966799--13966869	30	2.4	28	72	19	72	35	2	2	59	1.27
13967016--13967046	15	2.1	15	93	0	53	19	3	0	77	0.90
13969899--13969923	12	2.1	12	100	0	50	16	0	8	76	1.02
13970863--13970900	11	3.5	11	79	13	51	50	0	5	44	1.24
13971318--13971357	10	4.4	10	82	17	52	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13971320--13971357	18	2.2	17	90	4	58	39	0	0	60	0.97
13974468--13974540	24	3.0	24	69	18	60	50	0	2	46	1.15
13976190--13978757	512	5.0	514	98	0	4838	33	14	15	36	1.88
13983979--13984028	19	2.6	19	83	0	64	76	4	0	20	0.95
13984519--13984546	2	14.0	2	100	0	56	50	0	0	50	1.00
13984540--13984669	70	1.9	68	84	6	172	35	9	9	46	1.68
13984540--13984674	68	2.0	67	82	8	166	37	8	8	45	1.67
13986038--13986154	60	2.0	59	84	1	153	32	6	19	41	1.78
13987326--13987367	17	2.4	18	84	4	59	45	4	14	35	1.66
13992276--13992356	16	5.1	15	73	16	65	53	0	0	46	1.00
13992276--13992399	32	3.9	31	77	15	110	50	0	1	47	1.16
13992404--13992454	23	2.2	24	92	3	86	43	0	1	54	1.11
13992415--13992485	34	2.2	33	87	7	101	46	0	2	50	1.16
13992582--13992647	26	2.6	26	85	4	91	51	0	1	46	1.10
13992622--13992711	18	5.2	16	72	16	65	54	0	1	44	1.07
13992644--13992712	19	3.8	18	78	12	61	55	0	1	43	1.08
13992729--13992848	35	3.4	34	80	8	109	40	0	1	56	1.15
13992751--13992834	12	7.5	11	71	21	52	44	0	1	54	1.07
13995282--13995326	22	2.1	23	88	12	69	40	2	2	55	1.24
13995287--13995334	22	2.2	20	85	10	60	39	2	4	54	1.32
14000260--14000317	29	2.0	29	86	3	82	51	3	1	43	1.28
14003250--14003275	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14003087--14003258	86	2.0	86	87	8	251	39	5	8	46	1.57
14010069--14010095	14	1.9	14	100	0	54	18	7	37	37	1.79
14015884--14015917	14	2.5	14	85	4	52	58	0	0	41	0.98
14018861--14019185	15	22.9	14	64	15	69	48	31	0	19	1.55
14018861--14019191	28	11.6	29	77	11	224	48	31	0	19	1.55
14018890--14019185	57	5.2	57	75	8	232	47	32	1	18	1.56
14018917--14019191	86	3.2	87	80	7	269	48	30	1	19	1.56
14024182--14024236	24	2.3	24	83	0	74	49	7	1	41	1.41
14024889--14025144	62	4.2	62	72	9	166	46	8	8	35	1.66
14031705--14031736	2	16.0	2	100	0	64	50	50	0	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91