genome.fa.s201.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  5  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587567--587617	10	4.9	11	81	11	63	49	9	0	41	1.36
587566--587740	21	8.5	21	71	13	87	48	10	3	37	1.55
587670--587727	20	2.8	21	84	2	82	46	15	1	36	1.56
587649--587740	41	2.2	41	81	11	109	47	14	2	35	1.56
587674--587740	20	3.3	19	78	13	64	49	13	1	35	1.51
587628--587783	21	7.5	21	71	11	54	46	10	7	35	1.66
587690--587867	84	2.1	82	83	9	218	49	10	7	33	1.64
587898--587946	20	2.5	20	87	9	66	46	18	6	28	1.72
588065--588116	10	5.0	10	88	6	50	46	9	1	42	1.47
588070--588116	21	2.2	20	88	7	67	40	10	2	46	1.50
588108--588194	21	4.2	22	73	17	62	43	11	9	35	1.73
588122--588217	21	4.6	21	75	12	83	45	11	7	35	1.68
588551--588639	21	4.3	20	76	13	83	51	15	0	32	1.44
588553--588636	40	2.1	40	84	6	107	52	15	0	32	1.43
595294--595407	17	6.7	17	79	9	117	26	22	17	33	1.96
595293--595407	53	2.3	49	81	11	133	26	23	17	33	1.96
595298--595396	34	2.8	35	90	3	155	26	22	17	34	1.95
597690--597758	21	3.3	21	78	6	70	47	14	8	28	1.74
597742--597824	21	4.1	20	71	10	69	46	12	3	37	1.58
597856--597966	21	5.3	21	64	14	59	45	9	11	33	1.72
598149--598190	11	3.9	11	81	6	50	50	16	4	28	1.66
598205--598354	21	7.3	21	70	10	94	48	6	9	36	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598438--598481	21	2.1	21	83	8	54	45	15	13	25	1.83
598566--598735	83	2.0	84	83	5	211	47	12	6	34	1.67
598566--598778	21	10.2	21	69	7	103	47	10	7	34	1.67
598723--598796	21	3.5	20	78	8	58	48	6	10	33	1.64
607122--607146	3	8.3	3	100	0	50	0	32	0	68	0.90
610265--610311	21	2.1	23	88	7	71	68	0	4	27	1.08
610390--610433	12	3.6	12	78	6	52	47	0	2	50	1.13
625763--625854	47	2.0	47	89	8	143	32	17	16	33	1.92
632731--632757	2	13.5	2	100	0	54	48	0	0	51	1.00
634633--634706	22	3.4	21	79	7	58	36	10	9	43	1.72
634651--634748	22	4.5	22	82	0	97	40	8	7	43	1.62
634702--634805	52	2.0	52	83	3	129	45	6	5	42	1.54
634783--634869	42	2.0	44	84	8	117	34	8	11	45	1.70
634964--635014	22	2.3	21	80	9	57	54	9	1	33	1.44
635202--635534	22	14.8	22	72	13	144	40	8	5	45	1.59
635192--635294	33	3.1	33	72	5	82	39	9	2	47	1.51
635202--635349	66	2.2	66	84	4	201	40	7	4	47	1.53
635252--635394	44	3.3	42	82	7	160	41	5	6	46	1.54
635246--635394	66	2.3	66	81	4	167	40	5	7	46	1.55
635275--635512	118	2.0	117	80	9	261	39	8	6	45	1.60
635757--635790	14	2.4	14	90	9	52	35	0	2	61	1.11
635679--635833	69	2.3	67	84	9	192	36	6	4	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
635767--635900	44	3.0	44	83	5	137	38	8	2	49	1.50
635887--635926	21	2.0	20	90	5	62	30	10	7	52	1.62
635395--636008	22	27.8	22	69	12	123	37	9	5	48	1.58
636306--636400	22	4.4	22	80	7	104	33	9	3	53	1.49
636485--636532	22	2.2	22	88	0	69	35	6	0	58	1.23
636492--636542	22	2.3	22	93	0	84	35	3	0	60	1.15
636494--636545	11	4.7	11	76	9	52	36	3	0	59	1.16
636507--636600	22	4.3	22	77	12	86	38	3	4	54	1.36
636560--636607	22	2.2	22	92	0	78	37	2	8	52	1.44
639513--639561	16	3.1	17	72	19	52	34	0	6	59	1.22
643172--643228	24	2.3	26	84	6	73	63	3	0	33	1.12
645122--645166	20	2.2	20	88	7	65	33	15	15	35	1.89
645576--645664	45	2.0	45	97	0	169	48	5	17	28	1.70
646736--646782	22	2.1	23	84	11	62	59	0	0	40	0.97
646747--646784	12	3.1	13	85	7	53	63	0	0	36	0.95
646747--646813	22	2.9	22	76	10	55	65	1	0	32	1.02
651155--651197	22	2.0	22	86	9	61	41	11	9	37	1.74
655845--655894	26	2.0	25	84	4	64	42	10	24	24	1.85
656152--656193	22	1.9	22	90	0	66	40	9	11	38	1.75
656195--656233	19	2.1	19	90	0	60	41	20	10	28	1.85
659767--659791	2	12.5	2	100	0	50	48	0	0	52	1.00
664244--664268	1	25.0	1	100	0	50	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
665410--665525	34	3.4	34	68	3	90	29	14	19	36	1.92
667242--667357	59	2.0	59	92	0	196	30	16	13	39	1.87
669323--669355	15	2.2	15	94	0	57	15	30	6	48	1.69
671198--671263	20	3.3	20	64	16	55	31	12	4	51	1.59
671185--671264	40	2.0	40	95	0	142	35	12	7	45	1.70
675481--675507	2	13.5	2	100	0	54	48	0	0	51	1.00
690040--690078	3	13.0	3	100	0	78	33	0	0	66	0.92
691660--691705	23	1.9	24	82	8	58	73	2	6	17	1.14
696774--696839	31	2.1	31	100	0	132	31	18	16	33	1.93
697386--697419	2	17.0	2	100	0	68	50	0	0	50	1.00
698082--698144	31	2.0	31	90	0	99	38	11	9	41	1.73
698311--698348	13	3.2	12	85	10	51	50	0	2	47	1.15
720624--720656	15	2.1	16	88	5	50	48	0	3	48	1.17
720786--720819	11	3.0	11	91	4	50	58	0	2	38	1.13
721699--721742	23	2.0	23	86	4	63	34	6	11	47	1.66
726649--726678	10	2.8	11	90	10	53	26	10	0	63	1.26
729524--729557	2	17.5	2	87	6	52	47	0	0	52	1.00
731483--731696	59	3.8	57	77	12	251	35	12	6	45	1.67
731709--731758	15	3.3	15	83	5	57	78	0	4	18	0.91
731714--731836	21	6.0	20	74	15	85	71	2	2	23	1.10
731721--731825	15	6.9	15	71	22	60	69	2	1	25	1.12
731716--731824	10	10.9	10	70	22	61	69	2	1	25	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
732650--732739	22	4.0	22	79	11	94	63	0	5	31	1.17
732943--733280	41	8.1	41	82	8	308	37	20	16	25	1.93
732943--733272	84	4.0	82	81	6	351	38	20	16	24	1.92
734268--734300	15	2.2	15	89	10	50	12	15	0	72	1.12
734263--734312	27	1.9	25	84	8	64	10	16	0	74	1.08
745991--746389	59	6.8	58	86	6	511	37	14	7	40	1.73
746227--746318	27	3.2	27	64	24	71	38	16	6	39	1.74
746409--746481	6	13.2	6	76	15	61	76	0	5	17	0.97
746409--746481	16	4.5	15	76	20	58	76	0	5	17	0.97
746410--746475	5	12.4	5	78	12	53	77	0	4	18	0.94
746109--746437	177	1.9	177	78	5	369	42	12	5	39	1.66
746445--746521	10	7.6	10	72	17	52	67	3	1	27	1.16
746411--746525	14	8.4	14	64	24	50	69	2	3	24	1.17
746951--746988	19	1.9	19	89	5	58	36	7	7	47	1.62
747277--747306	11	2.8	11	95	5	53	86	0	0	13	0.57
747297--747459	22	7.4	21	74	12	116	65	1	4	28	1.21
753105--753135	6	5.2	6	96	0	53	29	0	0	70	0.87
758666--758720	29	1.9	28	81	3	65	52	1	1	43	1.22
758759--758783	10	2.5	10	100	0	50	24	0	0	76	0.80
762492--762526	2	17.5	2	93	0	61	45	0	0	54	0.99
770272--770321	25	2.0	24	84	3	64	46	2	0	52	1.12
770556--770592	17	2.2	17	90	9	58	54	0	0	45	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
770548--770597	14	3.4	14	79	15	55	52	0	0	48	1.00
771513--771555	17	2.5	17	88	0	59	58	0	0	41	0.98
771543--771588	22	2.2	20	84	7	56	56	0	0	43	0.99
772269--772337	30	2.4	28	80	11	77	53	2	4	39	1.36
777232--777262	2	15.5	2	100	0	62	51	0	0	48	1.00
777815--777854	21	1.9	21	100	0	80	40	15	25	20	1.90
782355--782400	13	3.3	13	82	11	56	28	0	2	69	1.00
782354--782414	21	2.9	21	78	7	52	26	1	3	68	1.14
783423--783467	22	2.1	21	84	12	56	37	0	0	62	0.96
783424--783464	20	2.0	21	86	13	59	39	0	0	60	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91