genome.fa.s201.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  24  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4247813--4248286	48	9.8	48	80	5	463	30	11	18	39	1.86
4247813--4248705	49	17.8	49	73	12	550	28	11	18	40	1.86
4247778--4248707	97	9.3	96	74	11	568	28	11	18	40	1.86
4248260--4248311	25	2.1	25	96	0	95	26	11	17	44	1.83
4248215--4248358	73	2.0	73	86	5	202	27	12	18	41	1.86
4248166--4248402	121	2.0	122	87	4	345	27	12	19	41	1.87
4248533--4248719	99	1.9	99	84	2	250	29	12	17	40	1.86
4248288--4248719	48	8.8	49	77	8	256	27	12	18	41	1.86
4248692--4248784	44	2.1	44	83	0	114	26	12	18	41	1.86
4248715--4248820	44	2.4	44	80	3	124	30	13	13	43	1.82
4251466--4251494	11	2.7	11	94	5	51	62	0	0	37	0.96
4257661--4257710	17	2.7	19	75	9	59	38	0	2	60	1.09
4260572--4260610	20	2.0	20	85	10	53	51	0	0	48	1.00
4260572--4260638	23	3.0	22	81	18	61	50	0	0	49	1.00
4260625--4260689	28	2.4	26	85	14	80	52	0	1	46	1.10
4260805--4260839	18	2.1	16	89	10	52	62	0	5	31	1.18
4264997--4265063	29	2.4	27	79	11	73	43	1	1	53	1.19
4265120--4265144	6	4.2	6	100	0	50	16	0	0	84	0.63
4268250--4268302	17	3.1	18	75	8	56	28	13	35	22	1.92
4269522--4269559	5	7.8	5	91	2	51	0	21	21	57	1.40
4272409--4272439	16	1.9	16	93	0	53	16	16	19	48	1.81
4272892--4272935	14	3.2	13	84	9	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4273940--4273976	13	2.7	14	87	8	58	45	2	0	51	1.15
4274991--4275033	21	2.0	22	82	13	54	65	0	0	34	0.93
4276862--4276907	23	2.0	23	91	4	76	50	0	0	50	1.00
4278372--4278406	12	3.0	12	91	4	54	28	0	2	68	1.04
4278629--4278680	21	2.4	21	83	6	59	61	5	0	32	1.20
4278501--4278863	200	1.8	200	82	7	468	47	7	10	34	1.66
4290670--4291107	50	8.8	48	75	12	309	29	13	19	37	1.90
4290670--4291107	101	4.4	99	79	9	394	29	13	19	37	1.90
4290671--4291036	101	3.7	100	82	8	405	30	13	19	36	1.90
4291288--4291321	12	2.8	12	86	4	50	0	11	0	88	0.52
4292033--4292095	27	2.3	27	100	0	126	36	22	12	28	1.91
4292331--4292355	13	1.9	13	100	0	50	24	0	4	72	1.02
4292331--4292372	15	2.7	16	77	7	50	23	0	4	71	1.05
4292587--4292639	21	2.4	21	84	6	61	60	7	0	32	1.25
4293711--4293768	13	4.5	13	69	18	50	55	0	0	44	0.99
4293671--4293741	31	2.2	33	78	9	85	49	0	0	50	1.00
4293665--4293768	50	2.0	51	80	14	117	52	0	0	47	1.00
4301317--4301375	12	4.8	12	73	17	50	38	0	0	61	0.96
4302415--4302441	14	1.9	14	100	0	54	48	0	0	51	1.00
4302470--4302501	15	2.1	15	100	0	64	28	6	0	65	1.16
4306155--4306214	24	2.5	24	81	2	68	63	0	0	36	0.95
4306273--4306339	14	5.2	13	71	11	50	47	0	1	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4307934--4307970	2	19.0	2	94	5	67	0	48	0	51	1.00
4308819--4308856	18	2.1	18	100	0	76	31	5	26	36	1.79
4317396--4317438	16	2.5	17	85	7	52	46	2	2	48	1.27
4318047--4318082	11	3.2	11	92	7	63	50	0	0	50	1.00
4318047--4318083	12	3.2	12	96	3	67	48	0	0	51	1.00
4324133--4324162	2	15.0	2	100	0	60	50	0	0	50	1.00
4326938--4326983	2	23.0	2	86	0	65	47	4	2	45	1.34
4330437--4330462	11	2.4	11	100	0	52	26	0	0	73	0.84
4332000--4332092	46	2.0	46	100	0	186	41	10	17	30	1.83
4341866--4341920	28	2.1	26	83	10	67	54	5	1	38	1.34
4342841--4342873	16	2.0	17	88	5	50	69	0	3	27	1.03
4343310--4343449	72	2.0	69	86	6	192	43	4	3	48	1.39
4343317--4343473	71	2.2	70	81	8	167	43	5	3	47	1.43
4343365--4343770	66	6.0	66	69	14	252	39	9	5	45	1.60
4343387--4343872	205	2.4	198	77	7	433	37	9	5	46	1.61
4353250--4353278	2	14.5	2	100	0	58	48	0	0	51	1.00
4353649--4353693	18	2.5	18	86	10	65	24	13	0	62	1.31
4358036--4358084	25	2.0	24	84	4	62	40	0	0	59	0.98
4358505--4358535	14	2.3	13	94	5	53	41	0	0	58	0.98
4359066--4359120	24	2.2	25	78	12	60	40	7	1	50	1.40
4359267--4359320	27	2.1	27	82	6	67	59	3	1	35	1.26
4359494--4359553	26	2.6	21	78	19	66	56	0	5	38	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4359568--4359602	18	1.9	18	94	0	61	40	0	0	60	0.97
4359963--4360030	26	2.7	24	72	18	59	51	2	1	44	1.25
4366658--4366695	19	2.0	19	94	0	67	39	26	13	21	1.89
4369372--4369976	130	4.6	130	81	4	624	40	6	7	46	1.56
4369371--4369976	263	2.3	257	81	6	662	39	6	7	46	1.56
4372883--4373026	64	2.3	63	87	3	209	37	13	18	30	1.89
4373629--4373698	35	2.0	35	86	10	99	37	7	15	40	1.75
4376835--4376976	62	2.3	62	84	4	171	42	24	9	23	1.84
4376868--4376921	25	2.2	25	83	6	65	42	27	9	20	1.82
4376970--4377011	12	3.5	12	86	0	57	38	14	16	30	1.89
4376966--4377011	24	1.9	24	90	0	74	36	15	15	32	1.88
4377810--4378740	187	5.0	184	80	8	926	40	11	12	36	1.78
4377793--4378741	374	2.6	362	83	6	1110	40	11	12	36	1.78
4381222--4381283	21	3.0	21	95	0	115	30	8	27	33	1.86
4383760--4383970	101	2.1	101	98	0	404	36	11	20	30	1.88
4389967--4390019	26	2.0	26	100	0	106	30	7	30	32	1.85
4393197--4393323	63	2.0	64	95	3	229	24	3	37	34	1.71
4393205--4393337	63	2.1	64	83	5	162	27	4	37	30	1.77
4400119--4400175	22	2.4	24	82	8	73	35	0	3	61	1.13
4400576--4400620	17	2.7	16	82	6	54	73	8	0	17	1.08
4406559--4406611	21	2.6	21	74	14	56	71	5	1	20	1.16
4412580--4412613	6	5.7	6	100	0	68	14	17	50	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4413823--4413883	32	1.9	32	86	6	88	40	1	4	52	1.33
4413825--4413894	31	2.3	31	80	5	79	40	2	4	52	1.36
4415274--4415384	38	2.9	38	79	12	97	30	4	3	61	1.33
4415329--4415384	9	6.2	9	73	8	51	30	1	1	66	1.12
4415330--4415384	18	3.0	18	78	2	65	30	1	1	65	1.13
4416639--4416757	63	1.9	63	85	3	168	43	9	14	32	1.77
4424199--4424245	21	2.3	20	85	7	60	44	10	2	42	1.51
4431166--4431199	11	3.1	11	82	0	50	35	20	11	32	1.89
4437970--4438142	45	3.9	45	77	8	174	42	9	16	32	1.79
4437994--4438142	22	6.7	22	80	11	151	42	9	15	32	1.79
4437861--4438159	22	13.5	21	71	13	147	39	9	17	33	1.82
4437861--4438175	44	7.1	43	73	12	169	39	9	17	33	1.82
4438248--4438320	22	3.3	22	82	0	74	35	16	10	36	1.84
4438305--4438357	23	2.3	23	78	9	56	24	13	20	41	1.88
4438217--4438344	44	2.9	43	76	5	112	30	16	15	37	1.90
4439855--4439886	9	3.4	9	91	8	55	12	9	0	78	0.97
4439855--4439894	10	4.1	10	87	3	55	12	12	0	75	1.06
4441416--4441457	14	2.8	15	82	10	50	52	7	9	30	1.61
4442186--4442286	44	2.3	44	84	3	132	56	13	5	23	1.60
4443001--4443062	18	3.4	18	80	4	63	75	4	3	16	1.10
4446126--4446171	10	4.6	10	88	0	74	47	17	0	34	1.48
4451744--4451866	39	3.2	40	79	4	117	30	17	20	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4451779--4451880	39	2.6	39	79	3	107	31	19	20	28	1.97
4452962--4453301	158	2.2	158	85	3	452	30	7	17	44	1.78
4453992--4454032	19	2.1	20	90	4	66	39	4	7	48	1.52
4454909--4454976	23	3.0	23	80	0	73	30	41	10	17	1.83
4456381--4456432	14	3.4	15	82	17	63	75	0	17	7	1.03
4456375--4456423	18	2.5	20	77	12	57	73	0	20	6	1.04
4457656--4457743	39	2.3	39	86	2	115	43	7	11	37	1.70
4458175--4458327	58	2.6	58	85	9	188	35	7	10	46	1.67
4458333--4458378	20	2.2	21	80	11	58	26	4	17	52	1.63
4458291--4458365	38	2.0	38	84	5	98	36	5	12	46	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91