genome.fa.s201.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  54  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8835475--8835531	22	2.6	23	83	5	64	42	10	1	45	1.49
8836148--8836475	22	15.2	22	69	15	132	32	7	6	53	1.54
8836330--8836449	11	11.2	11	66	15	56	32	5	5	57	1.42
8836377--8836497	22	5.5	22	81	4	102	34	5	4	54	1.46
8836377--8836553	22	8.1	22	72	20	86	36	7	4	51	1.50
8838087--8839820	872	2.0	863	93	1	2970	45	8	10	35	1.70
8850731--8850757	14	1.9	14	100	0	54	44	0	7	48	1.31
8851798--8851832	11	2.9	12	91	8	54	51	2	0	45	1.16
8852415--8852446	15	2.1	15	94	0	55	37	0	9	53	1.34
8852894--8852926	13	2.4	14	90	5	50	30	0	0	69	0.88
8852894--8852926	7	4.9	7	85	7	50	30	0	0	69	0.88
8853433--8853488	15	3.7	15	80	4	58	50	7	3	39	1.47
8853443--8853489	16	3.0	16	84	3	51	48	6	2	42	1.40
8854205--8854243	20	1.9	20	84	5	51	51	7	2	38	1.44
8854234--8854274	17	2.3	18	80	16	50	41	0	0	58	0.98
8854590--8854648	31	1.9	31	85	0	82	37	15	3	44	1.63
8855323--8855402	39	2.1	39	97	0	151	27	13	13	45	1.82
8861475--8861513	19	2.1	19	86	13	55	71	2	2	23	1.10
8864546--8864608	20	3.2	20	68	22	51	50	0	6	42	1.27
8864474--8864955	113	4.3	113	71	7	324	49	4	8	37	1.55
8880213--8880258	3	15.3	3	86	8	67	71	0	0	28	0.86
8880495--8880542	25	1.9	25	100	0	96	47	12	22	16	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8880952--8881205	84	3.0	85	83	4	298	38	14	18	28	1.90
8881328--8881368	21	2.0	21	100	0	82	41	14	14	29	1.86
8882466--8882540	10	7.3	10	71	11	62	0	13	4	82	0.80
8882465--8882580	22	5.2	22	68	22	66	5	14	2	77	1.05
8882475--8882533	30	1.9	31	83	10	77	0	15	5	79	0.89
8888597--8891647	437	7.0	437	96	1	5646	33	16	19	31	1.94
8896230--8896297	12	5.7	12	76	11	52	36	1	1	60	1.15
8896257--8896306	23	2.2	23	82	7	57	40	0	0	60	0.97
8902585--8902641	14	4.1	14	70	4	53	22	5	1	70	1.17
8903775--8903819	19	2.2	22	88	11	69	46	0	0	53	1.00
8908604--8908690	29	3.0	29	69	21	74	41	3	1	54	1.25
8908711--8908780	27	2.4	29	77	15	74	47	4	0	48	1.21
8908731--8908794	28	2.3	28	78	10	69	45	3	0	51	1.17
8908856--8908950	29	3.2	28	81	11	111	38	2	7	51	1.42
8908871--8908983	29	3.9	29	79	3	104	38	1	6	53	1.37
8914889--8914956	9	7.6	9	73	6	57	38	2	2	55	1.30
8915354--8915425	10	7.3	10	79	7	76	34	4	0	61	1.16
8915351--8915423	19	3.7	19	80	10	85	34	4	0	61	1.15
8915352--8915423	29	2.5	28	82	13	83	34	4	0	61	1.16
8915493--8915543	18	2.8	20	74	20	56	45	0	0	54	0.99
8917363--8917410	20	2.3	20	86	10	62	45	0	2	52	1.12
8918030--8918071	16	2.7	16	85	3	50	14	2	7	76	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8917829--8918892	530	2.0	536	95	1	1917	27	8	10	53	1.63
8920829--8920871	12	3.6	12	84	12	61	46	0	0	53	1.00
8920824--8920871	24	1.9	26	87	8	73	47	0	0	52	1.00
8921781--8921805	7	3.6	7	100	0	50	0	24	0	76	0.80
8921833--8921861	15	2.0	15	93	6	51	37	0	6	55	1.27
8923654--8923683	15	2.0	15	93	0	51	23	0	13	63	1.29
8931099--8931142	9	4.9	9	77	0	52	38	4	4	52	1.42
8931561--8931632	10	7.3	10	79	7	76	34	4	0	61	1.16
8931558--8931630	19	3.7	19	80	10	85	34	4	0	61	1.15
8931559--8931630	29	2.5	28	82	13	83	34	4	0	61	1.16
8931699--8931749	18	2.8	20	74	20	56	45	0	0	54	0.99
8934208--8934250	16	2.8	16	82	3	52	16	2	6	74	1.14
8934009--8935071	528	2.0	530	94	2	1850	27	7	10	53	1.63
8936195--8936241	19	2.6	18	82	3	58	17	4	2	76	1.04
8936305--8936343	18	2.2	18	85	0	51	15	0	2	82	0.79
8936695--8936739	22	2.1	21	84	12	56	17	4	4	73	1.17
8937809--8937892	42	2.0	43	83	6	109	38	1	4	55	1.28
8939853--8939882	15	2.0	15	93	0	51	23	0	13	63	1.29
8940405--8940447	22	2.0	22	85	0	59	41	11	9	37	1.74
8943896--8943930	18	1.9	18	88	0	52	25	22	17	34	1.96
8945712--8945778	23	3.0	23	70	16	68	58	0	8	32	1.29
8945867--8945922	17	3.3	17	78	16	62	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8945867--8945922	15	3.3	17	78	16	62	60	0	0	39	0.97
8945870--8945938	31	2.1	33	82	12	81	57	0	0	42	0.98
8945879--8945929	18	2.9	17	76	21	52	62	0	0	37	0.95
8955406--8955452	2	23.5	2	95	0	85	0	46	0	53	1.00
8955450--8955474	4	6.2	4	100	0	50	24	24	0	52	1.48
8958955--8959019	25	2.6	25	82	0	76	44	13	1	40	1.54
8961140--8961300	86	1.9	86	81	5	200	43	15	4	36	1.67
8962812--8962846	16	2.2	16	94	0	61	62	5	2	28	1.32
8970019--8971542	355	4.3	355	88	2	2112	35	11	15	37	1.84
8970019--8971542	712	2.1	712	87	2	2211	35	11	15	37	1.84
8983986--8984131	79	1.8	79	85	0	202	30	17	16	35	1.92
8984493--8984523	10	3.2	10	95	4	55	45	0	9	45	1.36
8984496--8984525	9	3.2	9	95	4	51	46	0	10	43	1.37
8987832--8987874	22	2.0	22	85	0	59	55	18	0	25	1.42
8990875--8990918	13	3.5	13	76	17	56	45	27	4	22	1.72
8990862--8990929	25	2.8	25	95	2	120	47	30	2	19	1.64
8990870--8990935	12	5.3	12	73	20	55	50	28	4	16	1.65
8991647--8992469	187	4.4	186	83	3	920	42	10	10	36	1.73
8991647--8992469	371	2.2	373	85	2	1069	42	10	10	36	1.73
8992320--8992557	125	1.9	126	86	0	343	38	11	13	36	1.81
9000543--9000647	34	3.1	34	78	0	111	39	10	9	40	1.72
9000514--9000647	68	2.0	68	80	2	153	41	11	10	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9001117--9001149	17	2.0	16	94	5	57	36	0	9	54	1.32
9003673--9003712	3	13.3	3	89	10	64	32	0	2	65	1.06
9022342--9022385	2	22.5	2	90	4	72	0	47	0	52	1.00
9025408--9025470	17	3.8	17	73	21	53	31	0	1	66	1.01
9025421--9025474	26	2.1	26	86	6	74	29	0	1	68	1.00
9026160--9026221	24	2.5	24	89	7	88	53	0	6	40	1.27
9027137--9027184	7	7.3	7	80	20	59	60	0	0	39	0.97
9027137--9027197	31	1.9	33	90	6	99	62	0	0	37	0.96
9032026--9032093	34	2.0	34	82	2	82	30	14	11	42	1.82
9032063--9032129	33	2.2	29	78	19	82	35	10	5	47	1.62
9035382--9035423	20	2.1	20	82	8	50	50	23	11	14	1.76
9035616--9035660	18	2.5	18	81	0	54	71	11	2	15	1.24
9035824--9035873	23	2.2	22	82	10	57	72	8	8	12	1.29
9036486--9036531	22	2.1	22	84	8	58	80	0	6	13	0.89
9039929--9039970	20	2.1	20	82	8	50	52	23	9	14	1.71
9041301--9041342	18	2.3	18	84	8	59	69	9	4	16	1.33
9042081--9042211	25	5.3	24	69	9	68	51	3	4	41	1.38
9042076--9042179	25	4.1	25	72	10	70	51	2	3	41	1.35
9042343--9042500	74	2.2	72	82	8	184	49	4	9	36	1.56
9047180--9047227	22	2.2	22	84	0	60	25	8	14	52	1.69
9047593--9047629	19	1.9	19	88	0	56	18	2	2	75	1.04
9047658--9047718	17	3.6	16	76	8	59	73	3	3	19	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9062745--9062792	25	2.0	24	83	4	60	27	6	0	66	1.15
9066081--9066137	28	2.0	28	82	0	69	29	5	24	40	1.77
9066116--9066156	21	2.0	21	85	9	57	34	9	17	39	1.82
9067600--9067644	18	2.5	17	85	7	54	20	2	2	75	1.01
9070308--9070354	24	2.0	23	84	16	60	6	17	8	68	1.37
9073873--9073917	3	15.0	3	100	0	90	33	0	0	66	0.92
9076656--9076691	12	2.8	13	87	8	56	50	0	0	50	1.00
9085861--9085888	10	2.8	10	100	0	56	28	28	21	21	1.99
9087793--9087827	2	17.5	2	100	0	70	48	0	0	51	1.00
9089732--9089785	24	2.2	24	86	6	72	40	12	12	33	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91