genome.fa.s201.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  64  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10630799--10631014	59	3.7	59	86	4	294	37	10	7	44	1.66
10630899--10630933	19	1.9	18	88	11	54	42	5	11	40	1.65
10630794--10631013	58	3.8	57	85	5	289	38	10	7	43	1.68
10630794--10631014	117	1.9	117	86	6	322	38	10	7	43	1.68
10631098--10631142	9	4.3	10	83	16	56	68	2	0	28	1.01
10631413--10631442	16	1.9	15	93	6	51	0	30	3	66	1.07
10631483--10631523	20	2.0	20	85	0	55	48	14	12	24	1.78
10632080--10632165	9	8.7	9	73	16	64	4	17	0	77	0.93
10632117--10632164	11	4.5	11	82	7	55	4	10	0	85	0.73
10632517--10632578	21	3.1	19	75	22	56	3	19	6	70	1.22
10639671--10639707	17	2.1	17	90	5	56	86	0	2	10	0.67
10642365--10642399	12	2.8	13	82	8	54	37	37	0	25	1.57
10644240--10644273	17	2.0	17	88	11	52	17	23	0	58	1.38
10644791--10644879	46	1.9	47	83	2	117	60	7	4	26	1.44
10647305--10647396	29	3.1	30	85	6	116	50	2	15	32	1.56
10647620--10647690	29	2.4	29	79	6	81	40	4	19	35	1.71
10652762--10652795	14	2.5	13	86	9	50	55	2	0	41	1.15
10659094--10659129	17	2.1	17	89	0	54	50	2	8	38	1.47
10664739--10664767	8	3.6	8	100	0	58	62	0	0	37	0.96
10673590--10673987	63	6.3	62	73	9	230	35	14	14	35	1.87
10673590--10673988	62	6.3	63	72	12	185	35	14	14	36	1.87
10675698--10675749	24	2.1	25	82	3	61	57	1	1	38	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10676097--10676126	2	15.0	2	100	0	60	50	0	0	50	1.00
10679811--10679851	18	2.2	19	86	4	57	17	12	0	70	1.16
10680286--10680325	19	2.0	20	85	4	55	65	2	0	32	1.06
10682995--10683065	29	2.4	29	76	4	72	43	5	14	36	1.68
10686383--10686421	21	1.9	20	89	5	60	74	2	2	20	1.06
10688429--10688461	2	16.5	2	100	0	66	51	0	0	48	1.00
10691738--10691858	11	11.9	9	72	23	57	70	2	4	22	1.19
10691728--10691875	15	10.3	14	67	22	60	70	2	4	21	1.18
10691731--10691794	27	2.4	28	76	12	71	68	6	1	23	1.21
10691798--10691858	6	11.2	5	78	13	52	72	0	4	22	1.04
10691800--10691859	29	2.1	27	90	6	93	73	0	5	21	1.02
10691798--10691875	23	3.5	23	81	13	83	73	0	5	21	1.03
10691992--10692025	4	8.5	4	100	0	68	50	23	0	26	1.50
10692914--10692970	29	2.0	28	83	13	71	47	0	3	49	1.18
10694400--10694455	2	28.0	2	79	13	62	51	0	3	44	1.18
10695722--10695755	15	2.3	15	89	0	50	47	0	11	41	1.40
10695706--10695744	19	2.1	19	95	0	69	48	0	7	43	1.31
10697551--10697575	2	12.5	2	100	0	50	48	0	0	52	1.00
10710930--10710954	12	2.1	12	100	0	50	44	0	0	56	0.99
10712217--10712259	18	2.3	18	84	8	50	81	2	6	9	0.95
10715290--10715324	18	1.9	18	88	0	52	37	0	14	48	1.44
10715900--10715952	2	28.5	2	78	14	51	50	0	1	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10716335--10716383	24	2.0	24	84	4	62	40	2	2	55	1.23
10716652--10716700	20	2.3	20	86	10	62	32	16	10	40	1.82
10717084--10717125	20	2.2	20	82	4	50	35	4	9	50	1.56
10718132--10718328	64	3.1	64	77	11	163	34	15	15	34	1.89
10718217--10718399	63	2.9	63	78	12	160	38	14	15	31	1.87
10718238--10718514	62	4.4	62	75	12	192	33	14	17	35	1.90
10725535--10725596	33	1.9	32	84	15	83	51	0	0	48	1.00
10727330--10727358	8	3.6	8	100	0	58	37	0	0	62	0.96
10730184--10730219	18	2.0	18	94	0	63	25	11	5	58	1.54
10733448--10733499	24	2.3	22	80	6	59	73	1	3	21	1.10
10734620--10734674	27	2.0	28	83	13	71	47	9	3	40	1.53
10735354--10735383	2	15.0	2	100	0	60	0	0	50	50	1.00
10739495--10739529	18	1.9	18	94	0	61	25	14	5	54	1.62
10743942--10743996	27	2.0	28	83	13	71	47	10	3	38	1.56
10744115--10744143	12	2.3	13	94	5	51	44	0	0	55	0.99
10748425--10748497	29	2.5	30	79	2	85	53	1	8	36	1.39
10752411--10752494	34	2.5	34	84	0	96	32	28	15	23	1.95
10752475--10752516	22	1.9	22	90	0	66	33	26	19	21	1.97
10752531--10752573	22	2.0	22	85	0	59	37	23	16	23	1.94
10752450--10752588	56	2.5	56	90	0	215	30	23	20	25	1.98
10752559--10752646	34	2.6	33	76	5	95	31	22	20	25	1.98
10753271--10753326	21	2.7	21	75	10	60	16	25	12	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10754633--10754750	63	1.9	60	84	5	155	32	16	11	39	1.84
10759839--10759885	16	3.1	16	81	9	62	27	0	6	65	1.16
10759930--10760009	31	2.7	31	83	12	89	22	5	0	72	1.04
10760459--10760527	35	2.0	35	97	0	129	46	18	15	18	1.84
10761199--10761242	23	2.0	23	90	4	72	15	9	9	65	1.45
10763873--10764029	52	3.0	52	83	1	163	28	21	8	42	1.81
10764050--10764085	11	3.3	11	88	0	54	44	25	0	30	1.54
10766086--10766127	20	2.1	20	90	0	66	35	2	0	61	1.09
10766083--10766122	8	5.0	8	90	0	53	40	0	0	60	0.97
10769097--10769124	12	2.3	12	100	0	56	14	21	10	53	1.70
10770453--10770483	12	2.5	13	94	5	55	22	25	22	29	1.99
10776188--10776227	19	2.0	20	90	4	64	35	0	0	65	0.93
10778678--10778953	151	1.8	151	85	3	385	40	8	6	44	1.61
10778717--10780076	463	3.0	462	94	0	2352	37	9	8	44	1.67
10780343--10780388	21	2.0	21	84	12	56	56	4	2	36	1.31
10781292--10781345	21	2.5	22	90	6	92	42	12	7	37	1.72
10782208--10782418	22	9.7	22	73	15	109	46	4	11	36	1.60
10782430--10782490	22	2.8	22	80	5	70	59	6	6	27	1.48
10782523--10782620	22	4.4	21	77	8	88	50	4	10	35	1.55
10782530--10782616	44	2.0	44	88	0	129	48	4	10	36	1.58
10782616--10782804	93	2.0	94	90	1	299	31	13	5	49	1.65
10783036--10783375	22	15.4	22	66	16	78	50	5	8	36	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10783226--10783318	44	2.1	44	80	7	100	51	7	7	33	1.58
10783637--10783699	22	2.9	22	74	9	65	38	3	17	41	1.65
10783705--10783883	66	2.7	65	80	10	172	47	8	6	36	1.61
10783712--10783884	44	4.0	44	82	3	165	47	9	6	35	1.62
10783712--10783884	22	7.9	22	79	7	133	47	9	6	35	1.62
10784380--10784519	22	6.4	22	78	9	126	48	9	5	36	1.59
10784347--10784521	66	2.6	65	79	9	167	47	9	6	37	1.61
10784347--10784521	44	4.0	43	76	5	129	47	9	6	37	1.61
10784709--10784779	22	3.2	22	76	5	72	43	8	11	36	1.71
10784768--10784810	22	2.0	22	85	0	59	44	2	6	46	1.43
10787396--10787440	20	2.2	20	84	7	56	33	13	4	48	1.62
10790770--10790814	21	2.2	20	88	4	63	66	0	13	20	1.24
10794063--10794114	2	26.5	2	78	3	52	51	3	1	42	1.31
10794433--10794485	2	28.5	2	78	14	51	50	0	1	47	1.12
10794864--10794912	24	2.0	24	84	4	62	40	2	2	55	1.23
10795173--10795208	18	1.9	19	94	5	65	33	16	11	38	1.84
10795599--10795640	20	2.2	20	82	4	50	35	4	9	50	1.56
10796630--10797025	62	6.3	63	74	9	265	35	14	14	35	1.87
10796630--10796840	63	3.3	63	77	10	182	35	13	14	36	1.86
10804058--10804119	33	1.9	32	84	15	83	51	0	0	48	1.00
10807660--10807770	3	35.3	3	71	21	54	30	0	5	63	1.16
10807799--10807831	3	11.7	3	87	12	52	30	0	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10807799--10807831	14	2.4	14	94	0	57	30	0	0	69	0.88
10807799--10807840	17	2.5	17	88	3	59	30	0	0	69	0.89
10808237--10808310	31	2.4	31	90	6	114	22	25	22	28	1.99
10808370--10808415	19	2.3	20	88	3	67	26	30	21	21	1.99
10808700--10808732	9	3.7	9	100	0	66	18	0	9	72	1.10
10808691--10808738	18	2.7	18	83	0	69	14	0	6	79	0.92
10808756--10809212	155	2.9	161	92	4	736	28	15	17	39	1.90
10812356--10812401	16	2.9	16	81	15	60	21	4	2	71	1.14
10812365--10812440	10	7.3	10	71	12	55	22	5	1	71	1.14
10812398--10812444	16	3.2	16	75	22	50	25	6	0	68	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91