genome.fa.s201.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  85  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14377829--14377887	19	3.1	19	75	4	57	50	5	10	33	1.58
14377972--14378024	28	1.9	27	81	11	63	60	5	1	32	1.31
14378453--14378486	16	2.1	16	88	5	50	61	5	0	32	1.20
14381921--14381991	29	2.5	28	80	8	81	60	0	1	38	1.06
14382653--14382707	26	2.1	26	96	0	101	29	12	12	45	1.79
14382734--14382775	22	1.9	22	90	0	66	52	0	14	33	1.42
14384195--14384234	21	1.9	21	85	10	55	50	2	2	45	1.28
14384193--14384241	22	2.3	21	79	10	55	51	2	4	42	1.32
14384484--14384546	29	2.2	28	83	13	76	57	6	1	34	1.34
14388754--14388797	19	2.3	19	84	7	54	36	2	0	61	1.09
14388768--14388797	10	3.1	10	95	4	53	36	0	0	63	0.95
14388770--14388799	9	3.2	9	95	4	51	36	0	0	63	0.95
14389412--14389464	21	2.6	20	74	14	54	39	0	0	60	0.97
14391481--14391514	17	1.9	18	88	5	52	58	0	5	35	1.22
14392537--14392592	10	5.9	10	71	12	55	48	0	0	51	1.00
14392554--14392596	21	2.1	21	87	8	63	51	0	0	48	1.00
14392566--14392596	10	2.9	11	90	9	55	51	0	0	48	1.00
14392664--14392697	6	5.7	6	96	0	59	35	35	2	26	1.72
14393143--14393175	15	2.1	17	88	11	52	39	0	9	51	1.34
14395243--14395318	28	2.7	29	79	2	82	53	1	6	38	1.35
14395495--14395528	16	2.1	17	94	5	61	52	0	5	41	1.25
14395626--14395672	19	2.5	20	79	10	62	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14395640--14395669	10	3.1	10	95	4	53	36	0	0	63	0.95
14395642--14395671	9	3.2	9	95	4	51	36	0	0	63	0.95
14396278--14396330	21	2.6	20	80	14	63	37	0	0	62	0.96
14396245--14396323	23	3.4	23	70	18	56	35	0	3	60	1.15
14398121--14398171	22	2.3	22	89	3	75	41	25	7	25	1.82
14425092--14425140	25	2.0	25	100	0	98	26	8	32	32	1.86
14425700--14425741	20	2.2	18	87	8	57	64	7	0	28	1.20
14426399--14426443	23	2.0	23	81	0	54	40	0	6	53	1.27
14426490--14426534	20	2.2	21	88	7	67	53	0	0	46	1.00
14426487--14426539	20	2.8	19	78	15	58	50	0	0	49	1.00
14426523--14426559	14	2.8	14	88	8	51	62	0	0	37	0.96
14426660--14426696	14	2.6	14	91	0	56	56	2	0	40	1.13
14428334--14428376	19	2.3	19	95	0	77	69	0	0	30	0.88
14428912--14428948	20	2.0	20	89	10	60	37	0	0	62	0.96
14435918--14436296	129	3.0	127	77	13	445	26	13	19	40	1.89
14439356--14439394	18	2.3	17	86	8	53	33	0	2	64	1.08
14439377--14439445	34	1.9	36	83	13	90	49	1	0	49	1.09
14439418--14439467	23	2.3	22	83	10	66	58	0	0	42	0.98
14452259--14452297	20	2.0	20	84	0	51	35	7	5	51	1.53
14457503--14457548	23	1.9	25	83	16	62	45	0	2	52	1.13
14460783--14460811	13	2.2	13	100	0	58	55	0	13	31	1.39
14461363--14461933	283	2.0	283	95	0	1034	38	12	13	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14470507--14470562	28	2.1	28	83	6	71	42	5	1	50	1.35
14472084--14472165	30	2.9	28	87	7	105	35	2	3	58	1.29
14472745--14472785	20	2.1	19	86	4	55	36	0	0	63	0.95
14478282--14478345	25	2.4	27	82	10	69	53	3	0	43	1.16
14481732--14481816	31	2.8	32	84	10	106	48	0	2	49	1.14
14481847--14481887	20	2.1	19	86	4	55	31	0	2	65	1.05
14482275--14482324	24	2.0	24	84	3	64	30	6	0	64	1.18
14498680--14498706	3	9.0	3	100	0	54	66	0	0	33	0.92
14498705--14498747	3	14.3	3	100	0	86	32	0	0	67	0.91
14505215--14505295	25	3.2	25	82	3	92	54	2	0	43	1.13
14506332--14506368	20	1.9	20	94	5	67	59	0	0	40	0.97
14506540--14506576	19	2.0	18	89	5	56	43	0	8	48	1.32
14507854--14507921	32	2.1	32	86	0	91	26	22	19	32	1.97
14508648--14508690	2	21.5	2	95	0	77	48	0	0	51	1.00
14509290--14509327	19	1.9	20	89	10	60	36	2	2	57	1.26
14509554--14509649	31	3.2	29	70	14	77	54	5	3	37	1.39
14509571--14509668	31	3.2	30	80	12	101	55	6	3	35	1.40
14509553--14509669	32	3.8	31	77	11	116	53	5	2	37	1.39
14509554--14509668	61	1.9	60	82	8	144	53	6	2	38	1.40
14510475--14510518	22	1.9	24	82	17	58	50	2	0	47	1.13
14511130--14511167	18	2.1	19	85	5	51	57	0	0	42	0.98
14511197--14511247	25	2.0	26	85	14	72	60	3	0	35	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14513658--14513692	6	5.8	6	96	0	61	37	11	34	17	1.85
14513989--14514022	10	3.5	10	88	4	52	8	17	0	73	1.08
14515116--14515188	35	2.1	35	92	5	121	42	13	23	20	1.88
14515314--14515409	35	2.7	35	79	6	113	46	9	20	22	1.79
14515543--14515615	32	2.2	32	80	2	83	34	15	17	32	1.91
14515587--14515657	32	2.2	33	85	5	92	36	14	18	30	1.90
14515735--14515860	33	3.9	32	74	6	112	28	15	20	34	1.94
14516052--14516116	23	2.9	22	79	4	76	23	16	26	33	1.96
14516247--14516510	117	2.3	117	83	0	321	30	16	18	34	1.93
14516370--14516432	32	2.0	32	90	6	101	30	14	20	34	1.92
14516388--14516593	85	2.4	85	80	8	217	27	17	21	33	1.96
14516568--14516708	61	2.3	62	81	3	160	34	17	19	28	1.94
14516611--14516708	29	3.3	29	69	8	70	31	18	21	28	1.97
14517567--14517609	19	2.4	19	92	7	72	4	13	0	81	0.84
14517566--14517610	17	2.4	20	85	14	69	4	13	0	82	0.82
14522088--14522133	11	3.9	12	83	11	51	2	17	0	80	0.81
14522088--14522140	12	4.4	12	80	0	52	1	15	1	81	0.87
14523059--14523088	15	2.0	15	93	0	51	0	10	0	90	0.47
14525034--14525076	22	2.0	22	86	4	61	9	23	0	67	1.19
14538743--14538768	7	3.7	7	100	0	52	53	0	0	46	1.00
14539472--14539527	17	3.3	17	78	14	62	46	3	0	50	1.19
14540499--14540539	15	3.1	13	83	16	57	75	4	4	14	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14542111--14542159	20	2.4	21	82	6	64	22	0	30	46	1.52
14542516--14542573	24	2.4	24	83	11	66	10	6	1	81	0.95
14554172--14554306	55	2.5	55	82	2	146	22	23	14	38	1.92
14554560--14554597	3	12.7	3	94	0	67	28	0	2	68	1.03
14554599--14554645	3	15.7	3	100	0	94	65	0	0	34	0.93
14555340--14555416	5	14.4	5	74	16	50	16	6	1	75	1.08
14555334--14555423	30	3.0	30	72	15	87	17	6	1	74	1.09
14561407--14561499	8	12.2	8	84	12	108	77	0	11	10	1.00
14561433--14561492	29	2.1	28	93	3	102	76	0	13	10	1.01
14561425--14561477	13	4.2	13	69	26	51	73	0	13	13	1.10
14561425--14561506	37	2.3	36	89	8	123	74	0	14	10	1.07
14562491--14562694	41	5.1	40	82	8	231	23	17	23	35	1.95
14562519--14562814	41	7.8	37	74	17	213	21	16	25	36	1.94
14562593--14562801	107	2.0	102	87	4	301	20	17	27	34	1.95
14562695--14562845	41	3.6	42	93	3	252	19	17	25	36	1.94
14562852--14562928	1	77.0	1	73	0	64	87	7	1	3	0.73
14562855--14562921	8	7.7	9	77	12	77	86	8	1	2	0.73
14562852--14562921	16	4.1	17	87	5	90	87	8	1	2	0.71
14562852--14562928	24	3.1	24	85	10	102	87	7	1	3	0.73
14562855--14562928	26	2.9	25	88	9	105	86	8	1	4	0.75
14562852--14562928	17	4.8	16	84	6	84	87	7	1	3	0.73
14563132--14563183	27	1.9	27	84	7	70	26	1	3	67	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14563128--14563296	74	2.3	73	77	7	171	23	1	4	71	1.13
14563380--14563425	17	2.6	18	75	3	58	17	10	0	71	1.13
14563973--14564008	18	2.1	18	89	5	56	47	0	52	0	1.00
14564328--14564387	6	10.5	6	75	10	54	13	5	1	80	0.96
14564328--14564385	17	3.4	17	72	13	57	13	5	1	79	0.98
14564334--14564405	34	2.3	31	81	13	92	13	6	1	77	1.03
14564340--14564392	17	3.1	17	83	5	72	13	3	1	81	0.92
14564341--14564419	28	2.9	27	80	12	74	13	7	1	77	1.05
14564341--14564393	28	2.0	28	85	10	76	13	5	1	79	0.99
14564336--14564415	17	4.9	16	73	11	65	15	6	1	77	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91