genome.fa.s201.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  70  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11638802--11639129	22	14.9	22	70	8	130	39	8	3	47	1.53
11638802--11639106	111	2.7	111	79	7	305	40	7	4	47	1.52
11638780--11639140	44	8.2	44	73	12	186	39	9	4	46	1.55
11639384--11639528	22	6.6	22	73	6	98	38	7	8	45	1.63
11639643--11639754	22	5.3	22	73	8	79	38	9	2	49	1.50
11639967--11640047	22	3.6	21	76	14	65	38	8	0	53	1.32
11639989--11640047	11	5.3	11	74	10	57	38	8	0	52	1.32
11639989--11640052	22	2.8	24	81	11	73	37	7	1	53	1.40
11640097--11640147	21	2.4	21	80	0	66	37	5	7	49	1.56
11641057--11641333	146	1.9	144	83	6	362	37	10	8	43	1.71
11645227--11645267	20	2.0	20	86	9	57	58	0	0	41	0.98
11648639--11648742	53	2.0	53	92	0	172	29	19	10	40	1.85
11653485--11653523	4	9.8	4	100	0	78	76	0	0	23	0.78
11656338--11656434	28	3.5	28	82	2	106	26	20	18	34	1.96
11662716--11663108	192	2.0	192	96	0	723	43	5	20	30	1.75
11666384--11666469	42	2.1	41	84	6	111	40	3	3	52	1.35
11666503--11666543	20	2.0	20	86	9	57	39	0	0	60	0.96
11670461--11670737	149	1.9	149	84	6	373	43	8	10	37	1.70
11671638--11671907	22	12.6	22	70	12	98	50	5	7	37	1.53
11671730--11671791	11	5.5	12	74	14	60	51	1	8	38	1.41
11671928--11672052	44	2.8	43	74	10	101	50	1	11	36	1.48
11672242--11672386	22	6.6	22	74	6	98	45	8	7	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11672628--11672933	22	14.0	22	70	13	152	48	4	9	37	1.56
11672662--11672933	111	2.5	108	79	9	264	47	4	8	38	1.55
11672904--11672960	22	2.6	22	83	2	62	49	0	5	45	1.24
11673031--11673077	22	2.1	22	84	7	60	48	2	6	42	1.40
11673040--11673147	22	4.9	22	75	4	101	40	2	12	43	1.58
11673161--11673295	66	2.1	64	83	5	164	50	7	6	35	1.57
11673205--11673398	22	8.9	22	68	5	106	49	6	7	36	1.58
11673732--11673806	21	3.6	20	70	8	60	44	13	5	37	1.66
11675184--11675222	19	2.2	18	90	9	62	48	0	0	51	1.00
11675530--11675806	150	1.8	150	96	0	509	37	12	8	41	1.74
11676408--11676460	20	2.7	20	88	5	72	60	0	0	39	0.97
11676930--11676960	2	15.0	2	93	6	53	48	3	0	48	1.17
11677701--11677792	45	2.0	45	83	8	116	33	14	5	46	1.67
11677753--11677954	56	3.6	57	88	4	268	35	11	7	45	1.69
11678368--11678397	15	2.0	15	100	0	60	40	20	20	20	1.92
11687807--11687844	20	2.0	20	89	5	60	2	5	13	78	1.02
11692273--11692402	66	2.0	65	95	1	233	26	11	26	36	1.90
11695326--11695437	51	2.2	51	86	0	161	41	11	7	39	1.69
11696435--11696468	16	2.1	16	100	0	68	50	5	5	38	1.51
11698592--11698784	99	1.9	99	91	5	316	40	14	13	31	1.85
11702327--11702427	50	2.0	50	90	3	159	42	11	7	37	1.71
11707002--11707030	8	3.6	8	100	0	58	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11717623--11717650	12	2.3	12	100	0	56	25	14	28	32	1.94
11721393--11721440	15	3.1	15	87	3	69	29	4	14	52	1.60
11725242--11725315	36	2.1	36	89	0	112	24	8	4	63	1.39
11727621--11727658	19	2.0	19	100	0	76	36	31	15	15	1.90
11728249--11728273	7	3.6	7	100	0	50	12	0	0	88	0.53
11729416--11730456	528	2.0	512	91	3	1699	38	16	7	36	1.77
11732667--11732708	14	3.1	14	86	13	61	7	40	21	30	1.80
11732667--11732704	13	2.7	15	88	11	55	7	39	23	28	1.83
11732763--11732807	24	1.9	24	90	4	74	13	2	2	82	0.86
11732858--11732900	14	3.2	13	84	15	52	18	9	0	72	1.11
11732915--11733152	61	4.0	60	89	6	340	46	10	13	30	1.75
11732915--11733152	62	4.0	62	90	4	346	46	10	13	30	1.75
11737077--11737155	24	3.3	24	98	0	149	16	21	25	36	1.94
11742468--11742525	30	1.9	30	96	0	107	18	18	29	32	1.96
11743682--11743753	36	2.0	36	91	0	117	23	5	4	66	1.30
11746578--11746616	19	2.1	19	90	0	60	12	7	23	56	1.62
11750850--11750883	14	2.4	14	90	0	50	47	0	2	50	1.16
11750950--11750978	8	3.6	8	100	0	58	58	0	0	41	0.98
11751860--11751900	21	1.9	22	95	5	75	56	0	4	39	1.21
11755827--11755851	2	12.5	2	100	0	50	52	0	0	48	1.00
11758706--11758761	24	2.3	24	93	0	94	16	23	21	39	1.92
11763252--11763278	13	2.1	13	100	0	54	37	44	18	0	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11765051--11765081	7	4.6	7	92	8	55	12	0	0	87	0.55
11765051--11765081	13	2.3	14	94	5	55	12	0	0	87	0.55
11765384--11765456	36	2.1	35	94	2	128	21	8	5	64	1.41
11765545--11765614	36	1.9	36	88	5	106	45	5	14	34	1.68
11765987--11766021	17	2.0	18	88	5	54	2	17	0	80	0.84
11766992--11767025	16	2.2	16	89	5	52	76	0	5	17	0.98
11767009--11767104	3	32.7	3	81	8	108	65	1	5	28	1.20
11767585--11767810	89	2.5	89	79	4	258	46	15	19	18	1.83
11767678--11767897	115	1.9	115	85	1	307	46	15	19	19	1.84
11767805--11767975	89	1.9	89	85	0	234	45	15	19	19	1.85
11767686--11767925	115	2.1	115	83	1	302	46	16	18	18	1.84
11782501--11782526	11	2.4	11	100	0	52	46	0	15	38	1.46
11783552--11783846	148	2.0	148	98	0	572	17	34	26	21	1.95
11789999--11790105	42	2.5	42	77	3	117	34	28	19	17	1.95
11801477--11801525	19	2.8	17	78	6	53	16	2	6	75	1.09
11804938--11804967	14	2.1	14	100	0	60	16	26	13	43	1.85
11808293--11808326	17	2.0	17	94	0	59	38	0	0	61	0.96
11810770--11810840	35	2.0	36	88	2	108	22	5	4	67	1.29
11810917--11810985	36	1.9	36	96	0	129	44	2	11	40	1.56
11813761--11813833	31	2.4	31	88	4	103	23	26	23	27	2.00
11813895--11813939	19	2.4	19	92	0	72	24	31	22	22	1.99
11814159--11814196	5	7.6	5	82	11	51	21	44	34	0	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11814216--11814290	16	4.8	15	71	16	55	9	4	6	80	1.02
11814216--11814240	1	25.0	1	100	0	50	0	0	0	100	0.00
11814286--11814570	156	1.8	156	96	0	534	29	14	17	37	1.90
11818220--11818271	17	3.2	16	76	17	54	73	0	19	7	1.07
11818228--11818267	8	4.9	8	87	6	62	75	0	15	10	1.05
11819456--11820231	40	19.0	40	89	6	1023	22	17	22	37	1.94
11819477--11820231	81	9.2	81	90	3	1028	22	17	22	37	1.94
11819456--11820231	204	3.8	205	93	2	1244	22	17	22	37	1.94
11820239--11820338	14	6.5	14	80	17	110	86	8	0	6	0.72
11820242--11820325	22	3.7	22	86	9	116	86	8	0	4	0.68
11820239--11820332	33	3.1	31	84	14	117	86	8	0	5	0.71
11820239--11820332	37	2.4	41	84	10	117	86	8	0	5	0.71
11820242--11820332	9	11.6	8	79	18	95	85	8	0	5	0.73
11820239--11820325	1	87.0	1	76	0	75	87	8	0	4	0.67
11820241--11820339	23	4.5	22	76	19	91	84	8	0	7	0.76
11821116--11821186	31	2.3	31	82	4	90	21	21	25	32	1.98
11821257--11821293	19	1.9	19	88	0	56	29	24	21	24	1.99
11821513--11821555	5	8.6	5	85	10	61	20	44	34	0	1.52
11821513--11821567	15	3.5	15	85	9	67	20	43	34	1	1.62
11821637--11821937	156	1.9	157	93	0	514	31	15	16	36	1.90
11828159--11828195	18	2.1	18	89	0	56	51	0	0	48	1.00
11829694--11829743	12	4.2	12	79	5	57	52	2	0	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11829698--11829744	23	2.0	23	88	8	69	53	2	0	44	1.12
11832132--11832175	22	2.0	22	90	0	70	38	11	6	43	1.67
11834347--11834436	11	8.5	10	73	15	58	13	4	2	80	0.97
11834346--11834385	12	3.4	12	86	13	57	10	5	0	85	0.75
11834354--11834454	6	17.5	6	74	11	86	16	3	1	77	1.02
11834346--11834457	29	3.8	28	78	13	111	16	4	1	77	1.01
11834368--11834435	35	1.9	35	85	5	93	16	2	2	77	1.00
11834423--11834471	18	2.7	18	80	20	50	24	2	0	73	0.94
11834612--11834637	13	2.0	13	100	0	52	15	0	0	84	0.62
11835463--11835488	4	6.5	4	100	0	52	46	0	0	53	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91