genome.fa.s201.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  30  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5230853--5230953	42	2.4	42	81	1	121	34	9	10	44	1.73
5230969--5231126	83	1.9	82	83	6	201	28	12	13	44	1.81
5230969--5231128	42	3.8	42	82	7	191	28	12	14	45	1.81
5230973--5231162	85	2.2	83	79	11	199	28	12	14	44	1.81
5231615--5231647	14	2.4	14	85	5	50	12	18	3	66	1.36
5236322--5236377	16	3.2	16	78	14	58	48	10	7	33	1.65
5236273--5236360	17	4.9	18	68	16	51	46	11	5	36	1.64
5236318--5236377	18	3.4	17	76	17	59	50	10	6	33	1.62
5236519--5236556	20	2.0	20	89	5	60	55	10	5	28	1.56
5236526--5236614	29	3.0	30	82	14	98	60	5	2	31	1.32
5236534--5236625	31	3.0	32	81	13	106	57	5	2	34	1.34
5236552--5236626	34	2.3	33	86	11	102	57	4	1	37	1.26
5236655--5236697	20	2.2	20	86	0	59	62	9	0	27	1.25
5236645--5236779	32	4.5	31	73	19	126	57	11	5	25	1.54
5236669--5236714	23	2.0	23	87	4	67	63	10	2	23	1.38
5236743--5236808	20	3.1	20	74	16	60	56	7	4	31	1.48
5236763--5236923	24	7.0	24	70	16	135	54	12	3	29	1.55
5236645--5236806	88	1.8	87	86	6	220	56	10	4	27	1.53
5236763--5236918	47	3.4	45	80	8	158	54	12	3	28	1.56
5236893--5236953	17	3.7	16	76	6	59	50	11	6	31	1.64
5237589--5237626	13	2.9	14	84	11	53	71	10	0	18	1.14
5239761--5239801	21	2.0	21	100	0	82	43	12	4	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5239981--5240080	24	4.3	23	75	9	87	36	6	13	45	1.68
5239963--5240135	46	3.8	45	80	8	161	35	6	14	43	1.71
5240118--5240165	22	2.3	22	85	7	64	35	8	12	43	1.73
5240118--5240176	20	2.8	21	82	5	66	33	11	10	44	1.75
5240244--5240319	17	4.2	19	75	11	63	31	7	14	46	1.73
5240267--5240344	17	4.5	17	74	7	50	33	6	11	48	1.65
5240468--5240605	17	8.1	17	73	0	87	31	17	8	42	1.79
5240481--5240632	34	4.5	34	77	3	171	32	17	8	42	1.79
5240645--5240695	18	2.8	17	80	11	57	29	13	9	47	1.75
5241132--5241187	29	2.0	29	82	6	71	16	5	3	75	1.13
5258042--5258111	34	2.1	34	91	0	113	31	4	1	62	1.23
5258952--5258983	14	2.2	15	94	5	57	50	6	0	43	1.27
5258951--5258996	15	3.1	15	84	9	58	56	6	0	36	1.25
5258971--5259114	60	2.4	61	81	5	177	50	2	9	37	1.48
5258893--5259044	77	2.0	77	85	6	206	50	3	5	40	1.43
5259032--5259173	71	2.0	74	88	4	218	50	4	9	35	1.56
5259806--5259863	25	2.3	25	100	0	116	37	27	18	15	1.92
5262941--5263079	75	1.9	75	90	3	226	30	17	26	25	1.97
5262676--5263208	280	1.9	281	85	2	732	33	17	24	24	1.96
5263473--5263510	18	2.0	20	90	10	62	50	15	2	31	1.58
5263666--5263804	75	1.9	75	92	3	235	29	17	27	25	1.98
5262912--5264355	725	2.0	723	92	1	2408	36	17	21	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5271280--5271308	14	2.0	15	93	6	51	13	10	0	75	1.04
5273501--5273689	86	2.2	85	79	6	195	34	6	17	40	1.76
5278924--5279040	56	2.1	57	83	1	146	27	14	13	44	1.83
5278950--5279082	57	2.4	57	83	3	153	24	9	13	51	1.71
5279662--5279686	13	1.9	13	100	0	50	32	8	16	44	1.76
5282978--5283265	145	2.0	144	93	0	486	40	22	11	26	1.87
5286764--5286803	16	2.7	15	84	7	55	22	0	5	72	1.04
5288320--5288369	18	2.9	16	77	13	55	24	0	2	74	0.93
5288879--5288932	19	2.8	19	82	2	72	11	1	25	61	1.40
5288879--5288927	20	2.5	20	86	3	73	10	2	26	61	1.39
5288879--5288940	20	3.2	19	74	4	52	11	1	22	64	1.34
5288962--5289013	20	2.6	19	79	8	59	19	5	23	51	1.67
5289636--5289692	23	2.5	23	82	5	71	31	7	7	54	1.54
5294354--5294401	23	2.2	23	85	10	66	81	0	10	8	0.88
5295498--5295699	23	9.1	21	71	10	109	36	8	14	41	1.76
5295481--5295666	67	2.8	65	78	11	214	33	9	14	41	1.79
5295498--5295906	23	18.8	21	65	18	99	33	8	14	43	1.76
5295725--5295900	45	3.9	45	78	7	178	30	9	14	45	1.76
5295708--5295906	90	2.2	90	76	7	206	31	8	14	45	1.75
5295832--5295903	25	3.0	25	72	9	71	26	6	13	52	1.66
5296064--5296157	19	5.1	18	69	18	77	28	9	12	48	1.72
5295989--5296260	36	7.4	36	75	6	172	29	15	10	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5296338--5296487	75	2.0	75	97	0	282	36	12	8	42	1.74
5296662--5296705	21	2.2	20	91	4	70	13	0	6	79	0.92
5297365--5297390	12	2.2	12	100	0	52	30	7	11	50	1.67
5297662--5297755	8	10.3	9	68	21	54	17	2	5	75	1.08
5297667--5297751	11	8.1	10	78	19	77	17	1	5	75	1.07
5297667--5297751	5	16.2	5	78	19	77	17	1	5	75	1.07
5297667--5297751	16	5.4	15	81	15	77	17	1	5	75	1.07
5297670--5297730	21	3.0	21	79	13	65	18	0	6	75	1.01
5297667--5297755	37	2.4	36	82	14	103	17	1	5	75	1.06
5297912--5297991	21	3.6	22	79	14	76	27	8	10	53	1.63
5297915--5297991	22	3.5	22	77	13	79	27	9	10	53	1.65
5302534--5302627	14	7.2	14	68	26	55	51	2	1	45	1.20
5302528--5302602	24	3.1	25	75	12	93	49	2	0	48	1.15
5302536--5302627	25	3.6	24	77	7	85	51	2	1	45	1.20
5302538--5302643	11	9.6	11	70	20	55	51	3	0	43	1.26
5302779--5302841	16	3.9	16	67	20	51	52	0	0	47	1.00
5302779--5302837	27	2.2	28	81	9	77	52	0	0	47	1.00
5302901--5302952	27	1.9	27	85	14	72	55	0	5	38	1.24
5303028--5303067	22	1.9	20	85	10	53	45	0	2	52	1.14
5303005--5303074	18	3.8	18	74	7	68	51	0	1	47	1.09
5303054--5303254	11	18.4	11	67	16	62	54	1	3	39	1.28
5303262--5303405	21	7.1	20	73	7	112	44	2	3	49	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5303206--5303389	21	8.9	20	68	14	90	48	2	4	44	1.36
5303368--5303415	21	2.3	20	79	10	51	43	2	8	45	1.45
5305687--5305844	85	1.8	86	86	6	232	43	10	12	33	1.76
5306663--5306727	33	1.9	34	87	3	96	35	4	16	43	1.69
5306729--5307652	411	2.3	412	81	6	1056	40	10	12	36	1.79
5315640--5315694	26	2.1	26	83	6	67	14	1	38	45	1.56
5315681--5315892	12	17.1	13	67	19	89	16	1	37	44	1.57
5315746--5315927	7	26.3	7	74	18	98	15	1	37	45	1.54
5315751--5315795	6	7.2	6	83	16	56	6	0	46	46	1.29
5315746--5315911	19	8.5	19	69	21	78	15	1	36	46	1.54
5315781--5315848	33	2.1	33	88	0	100	23	0	36	39	1.55
5315841--5315938	16	6.5	15	69	23	64	12	3	38	45	1.57
5315987--5316132	49	3.0	49	90	1	220	45	10	17	27	1.80
5317548--5317605	30	2.0	29	93	3	98	24	17	18	39	1.92
5317547--5317601	20	2.8	20	72	8	51	25	18	18	38	1.93
5334770--5334826	26	2.1	27	87	3	80	29	8	3	57	1.45
5334787--5334837	27	1.9	26	84	4	66	31	7	3	56	1.46
5335264--5335307	21	2.0	22	86	4	63	59	2	0	38	1.10
5335289--5335323	15	2.2	16	90	5	54	48	0	0	51	1.00
5344029--5344078	23	2.2	23	85	7	66	60	0	0	40	0.97
5344053--5344091	16	2.3	18	86	8	55	58	2	0	38	1.12
5350696--5350740	23	2.0	23	86	4	65	40	0	13	46	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5360935--5360972	18	2.1	18	85	9	51	13	7	50	28	1.69
5361475--5361539	29	2.2	29	76	13	71	41	3	3	52	1.32
5365535--5365583	25	1.9	26	84	12	66	8	10	8	73	1.25
5365598--5365639	17	2.5	16	85	11	57	73	9	4	11	1.22
5366717--5366753	17	2.2	17	90	0	56	8	2	5	83	0.88
5373832--5373891	2	30.0	2	75	0	57	46	5	1	46	1.34
5377572--5377628	22	2.4	24	82	11	73	19	8	1	70	1.23
5377568--5377633	17	3.6	17	75	15	60	18	7	1	72	1.15
5377979--5378084	7	15.1	7	70	20	62	24	1	2	70	1.10
5377977--5378087	18	5.8	19	68	22	65	24	1	2	71	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91