genome.fa.s201.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  8  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1284619--1284657	20	2.0	19	85	5	51	46	5	7	41	1.55
1284755--1284784	12	2.5	12	94	0	51	70	0	0	30	0.88
1285231--1285273	13	3.4	12	84	9	50	55	2	0	41	1.12
1285728--1285782	10	5.4	10	88	2	56	63	1	0	34	1.05
1285729--1285772	5	8.8	5	89	0	70	61	0	0	38	0.96
1292716--1292779	26	2.4	27	86	2	85	59	1	3	35	1.23
1292693--1292773	23	3.4	23	77	9	81	54	2	2	40	1.27
1292934--1293540	261	2.3	261	86	4	848	38	7	13	40	1.74
1297492--1297517	3	8.7	3	100	0	52	65	0	34	0	0.93
1299073--1299114	18	2.2	20	83	8	52	47	0	2	50	1.14
1303945--1303984	19	2.2	19	86	8	57	47	0	12	40	1.41
1304170--1304219	23	2.1	24	81	3	57	34	4	2	60	1.27
1307369--1307398	11	2.7	11	89	0	51	23	0	0	76	0.78
1308506--1308580	34	2.2	34	78	4	80	40	13	10	36	1.79
1308573--1308654	33	2.5	33	82	6	85	43	4	8	42	1.56
1308603--1308688	34	2.5	34	82	0	100	39	6	9	44	1.64
1309679--1309735	28	2.1	28	83	9	73	52	0	0	47	1.00
1312811--1313123	158	2.0	158	90	3	497	34	25	11	27	1.91
1319739--1319800	24	2.6	24	84	0	88	64	3	1	30	1.19
1319720--1319794	13	5.8	13	70	17	50	62	2	2	32	1.23
1320192--1320251	14	4.3	14	76	19	54	43	0	1	55	1.10
1320233--1320272	19	2.1	19	86	9	55	27	0	2	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1321759--1321810	14	3.7	14	87	7	70	42	0	0	57	0.98
1321748--1321818	28	2.6	27	76	8	74	46	1	0	52	1.09
1324869--1324907	16	2.4	17	87	12	64	33	5	0	61	1.18
1324863--1324922	24	2.5	24	81	13	61	31	6	0	61	1.22
1325772--1325844	11	6.8	11	77	10	53	53	0	0	46	1.00
1325770--1325872	14	6.7	15	75	19	97	51	0	0	48	1.00
1325765--1325872	40	2.8	36	75	18	103	50	0	0	50	1.00
1326011--1326054	22	1.9	22	86	9	61	81	6	0	11	0.86
1329200--1329245	3	15.3	3	81	0	56	4	34	4	56	1.39
1329206--1329252	21	2.2	21	92	0	76	6	34	6	53	1.52
1329203--1329252	12	4.4	12	80	14	61	6	34	6	54	1.50
1329194--1329242	9	5.4	9	90	0	53	8	34	4	53	1.50
1329512--1329597	43	2.0	43	83	0	109	31	9	15	44	1.78
1330375--1330415	15	2.7	15	80	0	55	46	0	0	53	1.00
1335252--1335287	13	2.7	13	91	4	54	75	0	2	22	0.94
1335252--1335301	20	2.5	21	80	9	59	70	2	4	24	1.15
1335317--1335343	10	2.7	10	100	0	54	59	0	7	33	1.25
1335498--1335534	12	3.2	12	85	14	51	43	0	0	56	0.99
1337279--1337328	18	2.8	18	90	6	75	46	0	0	54	1.00
1343320--1343447	47	2.7	47	81	4	150	44	6	21	27	1.76
1343320--1343458	49	2.9	47	80	4	154	42	6	23	27	1.78
1343818--1343856	20	2.0	20	100	0	78	10	25	17	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1343963--1344047	31	2.7	31	94	0	143	27	22	25	24	2.00
1344090--1344166	25	3.2	24	77	3	75	35	7	33	23	1.84
1344041--1344166	50	2.6	50	80	7	116	36	7	33	23	1.82
1344379--1344409	11	2.8	11	95	0	53	16	0	32	51	1.44
1344444--1344582	49	2.9	48	82	4	147	39	7	26	26	1.82
1345068--1345138	31	2.3	31	83	7	99	30	19	21	28	1.97
1345375--1345458	33	2.5	33	77	11	89	63	0	0	36	0.95
1345395--1345460	16	4.1	16	74	12	55	65	0	0	34	0.93
1345398--1345449	27	1.9	27	84	7	70	65	0	0	34	0.93
1346675--1346709	10	3.7	10	85	14	56	25	0	0	74	0.82
1355522--1355590	28	2.5	27	79	9	86	52	0	0	47	1.00
1355539--1355595	14	4.0	15	73	17	50	52	0	0	47	1.00
1365363--1365420	22	2.6	23	73	13	66	58	0	3	37	1.15
1366056--1366098	18	2.3	19	84	11	54	67	0	0	32	0.91
1366228--1366259	9	3.6	9	95	0	55	21	0	0	78	0.76
1366768--1366811	20	2.2	20	92	8	72	72	0	2	25	0.96
1366935--1366959	12	2.1	12	100	0	50	40	0	0	60	0.97
1370412--1370462	14	2.9	18	72	27	56	45	0	0	54	0.99
1380735--1380768	9	4.0	9	88	11	54	20	0	0	79	0.73
1380825--1380869	23	2.0	22	91	4	72	11	6	11	71	1.31
1381014--1381058	22	2.0	22	87	8	65	46	0	2	51	1.13
1384506--1384546	8	5.2	8	82	5	57	26	2	0	70	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1384506--1384546	15	2.6	16	80	7	57	26	2	0	70	0.99
1384520--1384555	18	1.9	19	88	5	56	27	2	0	69	1.02
1384506--1384567	31	2.0	31	84	12	83	27	3	1	67	1.15
1388993--1389075	42	2.0	42	95	0	148	40	12	25	21	1.88
1391543--1391588	23	2.0	23	95	0	83	26	10	13	50	1.74
1398908--1398940	16	2.1	16	94	0	57	42	6	9	42	1.61
1404833--1404905	30	2.6	27	87	10	94	24	32	13	28	1.94
1412191--1412230	20	2.0	20	85	14	55	40	0	0	60	0.97
1416676--1416720	22	2.0	22	87	8	65	33	13	22	31	1.92
1421341--1421392	24	2.2	24	82	6	61	23	11	7	57	1.59
1422136--1422427	150	1.9	150	90	1	469	42	18	17	21	1.89
1424359--1424407	21	2.2	24	79	13	52	42	4	0	53	1.20
1424367--1424395	14	2.0	15	93	6	51	48	0	0	51	1.00
1425160--1425194	10	3.5	10	85	14	54	31	0	0	68	0.90
1426971--1427032	15	4.2	14	76	10	52	50	1	1	46	1.20
1427935--1428023	11	7.6	11	71	19	65	65	1	0	33	1.00
1427917--1428001	23	3.7	23	79	7	75	65	3	0	30	1.09
1427901--1427986	23	3.5	24	76	16	70	65	3	0	31	1.10
1427973--1428016	16	2.7	15	80	13	52	59	0	0	40	0.98
1428069--1428093	12	2.1	12	100	0	50	60	0	0	40	0.97
1428032--1428099	30	2.2	31	87	7	95	48	2	0	48	1.16
1428082--1428129	24	2.0	24	88	8	71	45	2	0	52	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1428196--1428240	2	22.5	2	95	0	81	51	2	0	46	1.13
1428285--1428352	29	2.4	27	73	20	68	69	4	1	25	1.16
1430081--1430105	13	1.9	13	100	0	50	80	0	12	8	0.92
1431077--1431146	27	2.5	29	76	9	72	65	0	2	31	1.07
1431504--1431929	210	2.0	210	96	0	780	34	18	19	26	1.95
1436352--1436404	19	2.8	18	80	8	61	20	1	22	54	1.54
1436359--1436407	19	2.7	18	84	6	62	20	2	22	55	1.54
1443282--1443320	20	2.0	18	85	14	51	66	7	5	20	1.36
1444172--1444212	13	3.2	13	82	0	55	36	2	0	60	1.10
1444249--1444292	21	2.3	19	82	17	56	68	0	0	31	0.90
1452513--1452720	51	4.1	51	96	0	371	22	23	33	21	1.98
1452576--1452657	24	3.3	24	65	15	67	23	19	37	19	1.94
1452549--1452684	27	5.3	27	62	16	81	19	22	37	19	1.94
1452566--1452695	24	5.2	24	62	17	66	22	24	32	20	1.98
1456810--1456890	25	3.3	24	73	10	83	38	0	1	60	1.05
1460579--1460608	2	15.0	2	100	0	60	50	0	0	50	1.00
1463411--1463475	22	3.1	22	70	25	61	58	1	0	40	1.07
1471009--1471036	2	14.0	2	100	0	56	50	0	0	50	1.00
1484046--1484071	12	2.2	12	100	0	52	46	0	26	26	1.53
1485351--1485399	23	2.2	23	85	3	64	46	2	4	46	1.33
1485416--1485449	17	2.0	17	88	0	50	61	2	0	35	1.11
1485541--1485573	13	2.5	14	85	14	52	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1485552--1485598	21	2.2	22	88	3	69	40	0	0	59	0.97
1485568--1485600	16	2.0	17	94	5	59	45	0	0	54	0.99
1485705--1485750	14	3.2	14	81	6	56	54	4	0	41	1.20
1496343--1496411	25	2.7	26	78	14	72	36	0	2	60	1.11
1498750--1498833	35	2.4	37	77	18	99	39	7	2	51	1.42
1505973--1506003	15	2.0	16	93	6	55	41	0	0	58	0.98
1507682--1507711	2	15.0	2	100	0	60	50	0	0	50	1.00
1509265--1509316	27	1.9	27	88	0	77	71	7	19	1	1.20
1509264--1509323	27	2.2	27	81	0	75	71	6	20	1	1.17
1510347--1510396	25	2.0	25	84	7	66	42	0	8	50	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91