genome.fa.s201.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  74  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12236018--12236172	52	3.0	49	77	9	157	41	8	22	27	1.82
12239048--12239078	2	15.5	2	100	0	62	51	0	0	48	1.00
12239343--12239379	17	2.2	17	90	4	58	13	5	0	81	0.86
12241004--12241057	22	2.5	22	81	6	65	40	5	9	44	1.60
12241209--12241271	11	5.7	11	72	7	56	31	1	9	57	1.40
12241203--12241342	22	6.4	22	75	4	113	36	2	10	50	1.52
12241251--12241374	65	1.9	65	83	6	162	39	4	9	45	1.58
12241411--12241469	20	2.8	20	82	10	66	33	10	11	44	1.75
12241839--12242016	22	8.1	22	75	10	111	37	7	7	47	1.60
12241837--12241964	44	2.9	43	82	5	132	35	7	8	47	1.63
12241869--12242016	66	2.2	66	81	9	160	37	4	8	48	1.55
12241902--12241966	11	5.9	11	73	10	53	36	3	7	52	1.46
12241869--12242016	44	3.4	43	80	10	140	37	4	8	48	1.55
12242022--12242207	22	8.5	22	76	4	108	35	12	6	45	1.67
12242132--12242370	44	5.4	43	66	13	103	35	10	6	46	1.65
12242330--12242376	22	2.1	22	84	0	58	34	10	6	48	1.63
12242406--12242465	23	2.7	23	76	2	59	38	6	6	48	1.56
12242987--12243331	22	16.2	22	69	18	133	33	8	6	51	1.57
12242984--12243103	44	2.7	44	80	10	147	34	10	5	49	1.62
12243218--12243292	11	6.8	11	71	6	62	34	9	1	54	1.41
12243203--12243374	66	2.6	67	79	8	167	37	8	3	51	1.49
12243209--12243374	22	7.6	22	77	8	90	37	8	3	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12243477--12243548	37	1.9	36	83	5	90	41	12	6	38	1.70
12248964--12248995	17	2.0	17	88	11	50	18	9	15	56	1.66
12265933--12265983	26	2.0	26	100	0	102	47	15	7	29	1.74
12274754--12274832	37	2.1	37	90	0	122	35	10	18	35	1.85
12277156--12277204	3	16.3	3	95	0	89	65	0	2	32	1.04
12277955--12277989	12	2.9	12	86	0	52	45	11	0	42	1.40
12279728--12279891	85	1.9	85	90	2	258	46	10	5	37	1.61
12281178--12281290	48	2.3	49	80	8	124	53	1	3	41	1.28
12289435--12289538	52	2.0	51	90	1	163	26	19	7	46	1.77
12289737--12289889	52	2.9	50	80	7	180	47	9	17	25	1.78
12292214--12292238	2	12.5	2	100	0	50	52	0	0	48	1.00
12292291--12292429	70	2.0	70	84	0	179	43	8	14	33	1.76
12292513--12292549	2	18.5	2	94	0	65	48	0	2	48	1.15
12299875--12299908	12	2.8	12	90	0	50	29	2	35	32	1.73
12300649--12300689	15	2.7	15	85	14	57	43	0	4	51	1.23
12300656--12300689	14	2.3	15	95	5	61	38	0	5	55	1.24
12316664--12316713	24	2.1	24	100	0	100	48	12	4	36	1.59
12318575--12318603	2	14.5	2	100	0	58	51	0	0	48	1.00
12323656--12323698	19	2.3	19	91	0	68	58	4	4	32	1.39
12323757--12323848	21	4.4	20	75	8	69	35	9	8	45	1.68
12334317--12334368	26	2.0	26	100	0	104	46	15	7	30	1.74
12343142--12343209	35	1.9	35	90	0	109	29	8	25	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12348340--12348368	2	14.5	2	100	0	58	51	0	0	48	1.00
12348673--12348734	21	2.8	22	82	4	72	51	1	8	38	1.41
12348670--12348735	23	3.0	21	84	4	78	50	1	7	40	1.40
12355646--12355680	2	17.5	2	93	0	61	2	45	0	51	1.16
12358279--12358322	23	1.9	23	90	0	70	6	18	15	59	1.58
12367847--12367886	21	1.9	21	84	0	53	30	5	27	37	1.78
12373669--12373707	20	2.0	20	89	0	60	38	2	2	56	1.27
12373721--12373763	17	2.7	16	75	10	52	41	2	2	53	1.26
12374049--12374088	15	2.6	15	92	4	62	60	0	0	40	0.97
12374129--12374165	19	2.1	18	90	10	58	51	0	0	48	1.00
12374220--12374274	25	2.1	26	83	6	67	61	0	0	38	0.96
12374440--12374493	20	2.5	22	82	8	67	46	3	5	44	1.44
12377756--12377787	17	1.9	16	93	6	55	34	0	3	62	1.11
12377890--12377950	7	8.6	7	98	1	113	29	0	0	70	0.88
12377890--12377957	21	3.3	21	93	6	113	29	0	0	70	0.87
12379762--12379797	15	2.4	15	90	0	54	33	22	2	41	1.68
12386081--12386124	21	2.2	20	84	8	54	43	0	2	54	1.12
12386455--12386490	17	2.2	16	95	5	63	58	5	2	33	1.36
12387370--12387394	13	1.9	13	100	0	50	72	0	12	16	1.13
12388489--12388513	13	1.9	13	100	0	50	72	0	0	28	0.86
12388993--12389066	29	2.5	29	78	10	69	39	4	4	52	1.39
12394636--12394684	6	8.2	6	97	0	71	0	26	34	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12394632--12394684	18	2.9	18	91	0	79	0	26	33	39	1.57
12401457--12401489	15	2.1	16	88	5	50	51	6	3	39	1.42
12401430--12401508	34	2.3	34	82	4	97	46	6	5	41	1.51
12401549--12401625	34	2.3	34	88	4	111	41	3	7	46	1.51
12402290--12402343	8	6.8	8	73	23	51	37	0	0	62	0.95
12402282--12402349	14	4.7	14	78	10	66	36	0	0	63	0.95
12402295--12402352	12	4.5	12	76	16	53	36	0	0	63	0.94
12403360--12403403	20	2.2	20	87	0	61	52	0	2	45	1.13
12403709--12403746	19	2.0	19	89	0	58	44	2	0	52	1.14
12403886--12403915	3	10.0	3	100	0	60	66	0	0	33	0.92
12415934--12416012	37	2.1	37	90	0	122	35	10	18	35	1.85
12416457--12416509	19	2.6	21	85	14	83	30	41	0	28	1.56
12416466--12416508	19	2.3	19	100	0	86	30	41	0	27	1.56
12421217--12421247	2	15.5	2	100	0	62	51	0	0	48	1.00
12421547--12421608	21	2.8	22	82	4	72	51	1	8	38	1.41
12421544--12421609	23	3.0	21	84	4	78	50	1	7	40	1.40
12427905--12427938	12	2.8	12	95	0	59	29	5	32	32	1.81
12432366--12432417	2	26.0	2	96	0	77	44	0	5	50	1.26
12432884--12432930	23	2.0	23	91	0	76	8	14	14	61	1.55
12443289--12443328	21	1.9	21	84	0	53	30	5	27	37	1.78
12449283--12449316	14	2.4	14	100	0	68	47	0	0	52	1.00
12449403--12449455	20	2.5	21	81	6	63	43	1	3	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12449464--12449496	17	1.9	17	93	0	57	45	3	3	48	1.33
12449777--12449816	15	2.6	15	92	4	62	60	0	0	40	0.97
12449858--12449894	19	2.1	18	90	10	58	51	0	0	48	1.00
12449949--12450002	26	2.1	26	83	10	67	57	0	3	38	1.17
12450178--12450222	20	2.2	20	84	0	63	53	6	0	40	1.27
12450160--12450221	19	3.2	18	74	14	52	51	3	0	45	1.17
12453943--12453988	19	2.4	18	86	13	58	56	2	2	39	1.24
12458706--12458747	7	6.4	7	84	15	63	73	0	0	26	0.83
12459768--12459803	17	2.2	16	95	5	63	58	5	2	33	1.36
12460662--12460821	79	2.0	79	92	1	268	44	8	15	32	1.75
12461892--12461965	29	2.5	29	78	10	69	39	4	4	52	1.39
12461915--12461989	35	2.1	35	80	9	82	44	2	1	52	1.23
12467500--12467546	6	7.8	6	90	0	58	0	23	31	44	1.54
12471424--12471470	20	2.3	20	92	3	76	51	4	0	44	1.21
12473843--12473913	35	2.1	35	84	7	94	39	5	5	49	1.50
12474319--12474369	15	3.1	16	78	15	59	49	7	1	41	1.43
12474258--12474369	34	3.3	33	79	10	129	48	5	4	41	1.46
12474415--12474480	34	1.9	34	87	6	98	39	4	7	48	1.52
12475172--12475237	20	3.5	20	76	10	68	36	0	0	63	0.95
12475184--12475247	16	3.7	16	76	17	65	37	0	0	62	0.95
12475178--12475241	12	5.3	13	77	17	59	35	0	0	64	0.94
12476249--12476290	20	2.2	19	86	4	57	47	0	2	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12476595--12476631	19	2.0	19	89	5	58	45	2	0	51	1.15
12476772--12476798	3	9.0	3	100	0	54	66	0	0	33	0.92
12478584--12478620	3	12.3	3	88	0	56	59	0	0	40	0.97
12479915--12479955	21	2.0	20	90	4	64	70	0	0	29	0.87
12479957--12480001	3	15.0	3	100	0	90	66	0	0	33	0.92
12480123--12480260	13	9.9	13	70	16	91	47	28	0	23	1.52
12480274--12480414	44	3.2	44	72	15	132	51	29	0	19	1.48
12480303--12480349	15	3.1	15	79	11	60	59	25	0	14	1.36
12480274--12480435	88	1.9	86	86	2	234	51	28	0	19	1.47
12480166--12480442	28	9.6	28	72	8	139	49	29	0	20	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91