genome.fa.s201.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  40  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6858765--6858795	15	2.1	15	100	0	62	41	12	12	32	1.81
6859514--6859552	20	2.0	20	85	10	53	74	0	12	12	1.08
6860690--6860778	21	4.0	23	71	8	67	38	8	15	37	1.79
6861091--6861132	17	2.4	18	88	4	59	33	14	11	40	1.82
6861118--6861203	22	3.9	23	71	11	81	32	12	13	40	1.83
6869536--6869577	10	4.3	10	75	6	50	47	9	0	42	1.36
6872869--6873056	99	1.9	100	88	3	290	32	12	14	39	1.85
6874069--6874135	30	2.2	30	83	0	80	44	7	2	44	1.47
6874174--6874237	30	2.2	30	83	13	80	53	6	6	34	1.51
6879244--6879290	24	2.0	24	91	4	78	21	21	10	46	1.81
6879338--6879400	33	1.9	32	83	3	81	7	12	4	74	1.19
6890980--6891019	2	20.0	2	100	0	80	50	0	50	0	1.00
6898470--6898499	2	15.0	2	100	0	60	0	50	0	50	1.00
6898499--6898531	2	16.5	2	100	0	66	48	0	0	51	1.00
6902858--6902908	21	2.4	21	77	6	59	52	9	9	27	1.65
6904216--6904490	144	1.9	144	81	3	338	33	10	10	44	1.75
6904811--6904844	13	2.6	13	82	17	52	76	0	14	8	1.01
6905870--6906029	26	6.2	26	77	4	144	45	35	0	18	1.54
6905853--6905941	32	2.8	32	84	1	97	46	40	1	12	1.49
6905863--6905934	19	3.8	18	75	10	63	44	41	1	12	1.51
6905953--6906050	33	3.0	31	81	12	108	44	37	0	17	1.49
6905852--6906026	7	26.7	7	72	12	106	45	37	0	16	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6905852--6906026	13	13.4	13	71	8	115	45	37	0	16	1.52
6906153--6906199	20	2.3	21	88	3	69	31	17	6	44	1.73
6907073--6907117	14	3.1	14	81	12	63	66	0	4	28	1.11
6907084--6907122	16	2.2	18	82	17	55	71	0	2	25	0.98
6907083--6907127	16	2.4	19	75	24	51	71	0	4	24	1.05
6907081--6907122	18	2.5	17	88	11	61	73	0	2	23	0.94
6914729--6914910	86	2.1	86	93	1	312	26	9	12	51	1.70
6917178--6917243	31	2.1	31	94	0	114	46	19	3	30	1.65
6917997--6918050	27	2.0	27	92	0	90	33	3	33	29	1.75
6918715--6918744	15	2.1	14	93	6	51	40	33	0	26	1.57
6925366--6925412	21	2.3	20	85	10	60	51	2	27	19	1.58
6926131--6926168	19	2.0	19	100	0	76	42	21	15	21	1.89
6926373--6926556	96	1.9	97	82	5	230	33	11	11	43	1.77
6926374--6926564	48	4.0	48	75	8	181	32	11	12	43	1.77
6926891--6926917	10	2.7	10	100	0	54	33	22	14	29	1.94
6928963--6929045	13	6.2	13	77	6	78	44	36	0	19	1.51
6928970--6929105	20	6.9	20	72	18	90	39	41	0	18	1.56
6928969--6929105	13	10.4	13	69	16	70	40	40	0	18	1.56
6929024--6929072	6	7.5	6	82	13	53	36	48	0	14	1.44
6929177--6929223	20	2.3	21	88	3	69	34	17	6	42	1.74
6932677--6932716	7	5.6	7	90	3	53	77	0	5	17	0.94
6932621--6932714	13	7.2	13	71	7	64	72	3	6	18	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6933160--6933307	17	9.0	17	73	5	90	37	14	10	37	1.81
6933140--6933286	67	2.2	67	83	7	174	34	14	13	37	1.86
6933512--6933841	108	3.1	107	84	2	430	38	15	9	37	1.79
6934320--6934524	79	2.6	79	85	1	259	31	25	9	33	1.88
6935083--6935113	9	3.6	9	95	4	55	9	16	0	74	1.07
6935083--6935120	18	2.1	18	85	9	51	13	18	0	68	1.21
6937121--6937150	13	2.3	13	94	0	51	23	6	3	66	1.30
6937134--6937173	20	2.0	20	85	0	53	22	7	0	70	1.12
6937639--6937891	80	3.2	79	86	1	371	26	23	16	32	1.96
6937942--6937966	13	1.9	13	100	0	50	76	24	0	0	0.80
6940086--6940193	57	1.9	57	84	7	148	45	7	12	34	1.71
6940122--6940259	73	1.9	73	84	3	188	37	10	14	36	1.81
6944972--6945095	63	2.0	63	90	0	194	38	8	21	30	1.84
6946104--6946483	41	9.1	41	78	9	317	24	15	20	40	1.91
6946104--6946476	84	4.5	82	84	4	410	24	15	20	40	1.90
6946104--6946483	125	3.0	123	81	5	426	24	15	20	40	1.91
6946411--6946532	45	2.7	45	83	3	122	17	16	25	40	1.89
6946467--6947281	105	8.0	101	84	8	1048	38	12	15	32	1.86
6946861--6947160	93	3.2	93	85	6	422	39	12	15	33	1.85
6946957--6947281	98	3.2	100	85	9	406	41	12	15	30	1.84
6947043--6947270	109	2.1	109	91	2	368	42	13	14	29	1.83
6948247--6948271	13	1.9	13	100	0	50	76	24	0	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6950396--6950550	57	2.7	57	89	2	231	43	8	12	34	1.73
6950460--6950549	27	3.2	27	65	20	67	42	6	13	37	1.70
6955133--6955166	14	2.4	14	100	0	68	64	0	0	35	0.94
6955430--6955462	10	3.4	10	87	8	50	75	0	18	6	1.00
6955423--6955470	19	2.6	17	81	15	60	77	0	14	8	0.99
6956086--6956126	22	1.9	21	90	5	64	43	14	12	29	1.82
6957616--6957649	11	3.2	11	87	4	52	14	5	2	76	1.09
6957582--6957660	21	3.9	21	72	12	58	20	7	2	69	1.25
6964045--6964085	2	20.5	2	100	0	82	48	0	0	51	1.00
6969555--6969590	16	2.4	14	86	13	54	80	0	19	0	0.71
6970894--6970935	22	1.9	22	85	0	57	38	11	4	45	1.62
6973317--6973377	24	2.9	20	76	19	70	55	1	0	42	1.09
6982756--6982886	56	2.3	56	98	0	253	45	4	5	45	1.47
6983802--6983946	79	1.8	78	85	7	204	36	10	8	44	1.70
6983975--6984016	20	2.1	20	100	0	84	42	0	9	47	1.36
6985167--6985204	20	1.9	19	89	5	58	18	15	21	44	1.86
6988707--6988741	18	1.9	18	88	0	52	74	14	8	2	1.17
6995291--6995316	6	4.3	6	100	0	52	15	0	15	69	1.20
6996828--6996865	3	13.0	3	83	5	51	71	0	0	28	0.87
6996828--6996918	15	5.8	15	73	16	69	69	0	2	28	1.00
6996884--6996927	15	2.9	16	83	6	56	65	0	9	25	1.21
6997875--6997913	19	2.1	19	100	0	78	41	0	5	53	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6998995--6999042	14	3.2	14	75	16	51	70	0	2	27	0.98
7001761--7001818	11	5.5	11	73	21	52	27	8	1	62	1.35
7001766--7001853	20	4.2	20	79	16	83	28	11	1	59	1.39
7025604--7025633	14	2.1	14	100	0	60	40	13	0	46	1.43
7034382--7034420	19	2.0	21	85	10	55	12	2	2	82	0.89
7036187--7036295	54	2.1	52	91	3	173	65	1	25	7	1.29
7037264--7037351	3	29.0	3	90	6	133	65	0	2	31	1.05
7037483--7037525	3	14.3	3	100	0	86	67	0	0	32	0.91
7037617--7037923	154	2.0	155	89	2	474	49	8	11	30	1.68
7037887--7037925	20	2.0	20	84	0	51	61	10	7	20	1.52
7038225--7038277	14	3.9	14	82	9	56	73	1	0	24	0.93
7038246--7038277	7	4.6	7	100	0	64	75	0	0	25	0.81
7039242--7039270	3	9.7	3	100	0	58	68	0	0	31	0.89
7040013--7040063	14	3.6	14	82	15	61	80	7	5	5	1.02
7041466--7041507	20	2.1	20	90	0	66	26	16	2	54	1.54
7041465--7041518	24	2.2	24	84	12	67	25	20	3	50	1.65
7044093--7044511	213	2.0	213	83	4	533	32	13	15	38	1.86
7046692--7046735	18	2.4	18	85	7	54	75	4	15	4	1.14
7047215--7047278	24	2.6	23	78	11	65	68	0	23	7	1.15
7047608--7047639	6	5.3	6	100	0	64	84	0	0	15	0.63
7048608--7048671	29	2.2	30	83	8	78	28	15	17	39	1.90
7048686--7048784	33	3.1	33	76	2	85	32	15	16	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7048925--7049278	64	5.5	64	73	8	258	38	16	16	27	1.91
7048962--7049202	129	1.9	129	83	5	317	39	17	16	26	1.91
7048919--7049306	32	12.2	32	71	10	197	38	16	17	27	1.91
7049460--7049510	8	6.2	8	75	20	52	74	11	3	9	1.19
7049460--7049509	15	3.1	15	78	15	64	74	12	4	10	1.21
7049467--7049519	25	2.1	26	93	6	92	73	11	7	7	1.24
7051673--7051711	3	13.3	3	94	5	71	69	0	0	30	0.89
7052114--7052185	35	2.0	36	86	2	101	55	13	8	22	1.65
7052183--7052234	19	2.7	20	76	8	63	32	21	19	26	1.97
7065634--7065659	3	8.7	3	100	0	52	34	0	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91