genome.fa.s201.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  80  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13474156--13474210	27	2.0	27	82	6	67	60	0	1	38	1.08
13474231--13474353	19	6.6	18	69	20	65	45	1	0	52	1.10
13474228--13474303	18	4.1	19	68	13	59	43	1	0	55	1.08
13474297--13474359	25	2.5	26	87	7	87	49	1	0	49	1.10
13480671--13480712	17	2.4	18	84	4	59	35	14	4	45	1.66
13484253--13484353	52	2.0	50	83	16	127	48	10	2	37	1.54
13500277--13500301	12	2.1	12	100	0	50	76	0	8	16	1.02
13515128--13515166	12	3.2	13	85	10	55	41	10	0	48	1.37
13517028--13517074	22	2.1	22	88	7	69	31	4	19	44	1.70
13518552--13518576	12	2.1	12	100	0	50	76	0	8	16	1.02
13519693--13519728	2	18.0	2	94	0	63	50	0	2	47	1.15
13520688--13520748	23	2.5	25	81	7	72	39	1	6	52	1.37
13529949--13530007	28	2.1	28	87	6	84	50	5	0	44	1.24
13532780--13532805	2	13.0	2	100	0	52	50	0	0	50	1.00
13533287--13533334	21	2.3	21	86	10	71	18	0	2	79	0.84
13545117--13545183	19	3.5	19	80	9	66	49	1	0	49	1.10
13545167--13545213	11	4.3	11	75	20	53	55	2	0	42	1.12
13545133--13545213	19	4.5	19	75	19	75	53	2	0	44	1.14
13545151--13545231	33	2.4	34	85	4	110	56	2	1	39	1.20
13545124--13545221	23	4.0	25	66	26	66	53	2	0	44	1.12
13545297--13545362	15	4.3	15	72	11	53	43	0	1	54	1.09
13545232--13545314	32	2.5	32	80	5	85	44	1	1	53	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13545225--13545350	31	3.8	32	69	22	93	46	0	0	51	1.12
13545262--13545362	34	2.9	34	71	16	84	46	0	0	52	1.07
13550115--13550187	19	3.7	19	81	12	76	58	0	1	39	1.06
13550120--13550172	22	2.4	22	87	3	79	60	0	0	39	0.97
13550127--13550181	27	2.0	27	82	6	67	60	0	1	38	1.08
13550202--13550323	19	6.6	18	70	19	72	45	1	0	53	1.10
13550194--13550282	17	5.0	17	71	14	63	43	1	1	53	1.15
13550199--13550274	18	4.1	19	68	13	59	43	1	0	55	1.08
13550268--13550329	25	2.5	26	85	10	78	48	1	0	50	1.10
13550175--13550321	19	8.2	17	66	24	54	46	1	0	51	1.14
13550218--13550321	39	2.7	38	77	11	106	47	0	0	51	1.07
13554813--13554867	23	2.3	24	93	3	94	27	9	3	60	1.44
13567326--13567397	25	2.8	25	73	10	74	51	2	0	45	1.15
13568687--13568752	12	5.3	12	79	16	73	66	0	0	33	0.92
13568695--13568761	12	5.4	13	77	21	54	67	0	0	32	0.91
13569827--13569880	3	17.7	3	92	3	90	62	1	0	35	1.06
13571277--13571309	17	1.9	17	93	0	57	72	0	0	27	0.85
13571447--13571613	15	11.7	14	69	12	72	49	30	1	18	1.55
13571476--13571770	29	10.4	28	77	8	206	48	30	1	19	1.57
13571476--13571770	57	5.2	57	75	8	217	48	30	1	19	1.57
13571443--13571770	86	3.8	86	79	7	312	48	29	1	20	1.58
13571780--13571839	22	2.8	21	73	9	59	48	30	5	16	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13571754--13571826	28	2.6	27	76	8	74	47	31	4	16	1.65
13573534--13573580	16	2.9	16	96	0	85	57	6	0	36	1.24
13576373--13576442	28	2.5	28	88	2	95	25	21	18	34	1.96
13577908--13577941	11	3.1	11	82	0	50	73	0	0	26	0.83
13577891--13577936	20	2.3	20	85	7	58	69	4	0	26	1.07
13579060--13579107	22	2.2	21	85	3	60	52	0	10	37	1.36
13579196--13579305	22	5.0	22	70	10	73	50	3	8	37	1.50
13579180--13579299	43	2.8	44	77	8	120	51	3	7	37	1.47
13579223--13579349	22	5.7	23	73	12	72	50	3	10	35	1.55
13583685--13583756	25	2.8	25	73	10	74	51	2	0	45	1.15
13584483--13584516	14	2.5	14	85	4	52	58	0	0	41	0.98
13585053--13585121	12	5.4	13	79	20	67	62	1	0	36	1.04
13586182--13586236	3	18.0	3	88	3	83	61	3	0	34	1.13
13587399--13587480	42	2.0	41	83	13	105	64	2	3	29	1.23
13587780--13587824	14	3.1	15	84	9	58	55	22	0	22	1.44
13587824--13587850	9	3.0	9	100	0	54	44	55	0	0	0.99
13587846--13588112	57	4.7	57	77	9	217	47	31	1	19	1.58
13587875--13588033	14	11.1	14	65	13	65	49	29	1	20	1.57
13587846--13588112	28	9.4	29	78	10	214	47	31	1	19	1.58
13587846--13588112	86	3.1	86	84	7	296	47	31	1	19	1.58
13588122--13588181	22	2.8	21	73	9	59	48	30	5	16	1.67
13588096--13588168	28	2.6	27	76	8	74	47	31	4	16	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13589871--13589917	16	2.9	16	96	0	85	57	6	0	36	1.24
13591897--13591926	2	15.5	2	93	6	53	50	0	50	0	1.00
13592694--13592763	28	2.5	28	80	2	86	25	18	18	37	1.94
13594208--13594247	21	2.0	21	85	9	57	67	5	0	27	1.11
13595361--13595419	21	2.8	21	82	5	66	52	3	10	33	1.52
13595372--13595413	21	2.0	22	90	4	68	50	4	9	35	1.56
13595510--13595573	22	3.0	22	72	4	58	51	4	9	34	1.55
13595497--13595600	43	2.4	44	82	6	122	50	3	6	38	1.47
13595586--13595649	22	2.9	22	81	6	67	53	9	7	29	1.61
13595637--13595687	22	2.3	22	83	6	59	52	9	9	27	1.65
13595650--13595753	22	4.8	23	73	11	78	46	9	10	33	1.71
13595831--13595893	22	2.9	22	82	0	63	46	14	6	33	1.70
13596254--13596295	22	1.9	22	85	0	57	40	7	9	42	1.65
13596379--13596746	22	16.8	22	68	14	111	48	7	9	34	1.63
13596391--13596560	43	3.9	44	81	4	150	47	8	10	34	1.68
13596823--13597040	22	10.0	22	70	11	90	51	7	6	33	1.58
13596926--13597040	11	10.5	11	71	12	67	50	5	6	38	1.50
13596923--13597056	66	2.0	66	84	2	171	49	5	6	38	1.52
13596904--13597056	22	7.0	22	78	3	137	49	5	7	37	1.53
13597605--13597659	22	2.5	22	85	2	76	45	12	5	36	1.66
13597674--13597789	21	5.7	21	71	7	69	47	14	7	30	1.72
13601619--13601689	30	2.3	30	78	11	72	36	2	4	56	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13602248--13602296	22	2.2	22	92	0	80	26	22	2	48	1.61
13602280--13602461	91	2.0	91	94	0	319	35	16	8	39	1.79
13607313--13607625	129	2.4	129	81	3	335	42	5	8	44	1.57
13609750--13609794	23	2.0	23	90	0	72	48	6	15	28	1.70
13614679--13615398	240	3.0	240	96	0	1291	38	12	13	34	1.83
13619471--13619538	26	2.6	25	84	15	86	19	0	1	79	0.81
13619470--13619577	46	2.4	48	70	20	79	21	1	1	75	1.00
13619471--13619533	6	10.2	6	86	10	83	19	0	1	79	0.82
13619477--13619540	19	3.3	19	81	14	78	20	0	1	78	0.84
13619662--13619725	21	3.1	21	80	14	71	21	6	3	68	1.26
13619645--13619710	21	3.1	21	75	16	64	24	6	6	63	1.40
13619710--13619748	14	2.7	15	84	4	53	12	5	2	79	1.00
13620185--13620227	19	2.2	19	87	4	59	39	30	16	13	1.87
13620564--13620595	4	8.0	4	92	0	55	21	0	3	75	0.95
13620565--13620595	16	1.9	16	100	0	62	19	0	3	77	0.90
13620623--13620717	5	18.4	5	74	20	72	15	5	2	76	1.05
13620622--13620709	6	14.7	6	67	21	51	15	5	1	77	1.02
13620628--13620715	28	2.9	30	80	13	99	15	5	2	76	1.08
13620631--13620727	40	2.3	45	84	8	123	16	5	2	76	1.06
13620743--13621018	58	4.7	59	84	1	367	42	8	14	34	1.76
13620760--13621018	117	2.2	117	97	0	491	42	8	14	34	1.76
13629714--13629771	8	7.5	8	86	5	75	67	0	13	18	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13629714--13629784	15	4.7	15	86	6	81	71	0	11	16	1.13
13629711--13629819	23	4.9	23	77	18	106	75	0	11	12	1.06
13629766--13629795	8	3.6	8	91	8	51	90	0	0	10	0.47
13629766--13629811	9	5.2	9	89	2	58	86	0	6	6	0.69
13630828--13631082	41	6.1	41	85	1	312	23	16	23	35	1.95
13630828--13631082	124	2.0	125	84	3	327	23	16	23	35	1.95
13630827--13631081	83	3.1	82	85	2	339	24	16	23	35	1.94
13631290--13631349	5	11.4	5	76	16	59	20	1	1	76	0.96
13631290--13631349	11	5.6	11	75	13	54	20	1	1	76	0.96
13631463--13631521	21	2.9	21	80	16	70	22	5	3	69	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91