genome.fa.s201.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  11  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1853843--1853980	30	4.7	29	78	8	120	55	2	2	39	1.27
1854366--1854399	3	11.0	3	93	6	59	67	0	0	32	0.91
1856368--1856424	28	2.0	28	96	0	105	26	10	17	45	1.81
1862627--1862953	71	4.6	72	76	7	267	39	9	4	45	1.58
1870061--1870108	25	1.9	25	87	8	71	29	8	25	37	1.85
1876704--1876748	24	1.9	24	90	4	74	20	6	8	64	1.44
1877181--1877217	19	1.9	19	88	0	56	54	5	2	37	1.38
1877167--1877235	33	2.1	34	86	2	95	47	4	5	42	1.47
1877393--1877463	20	4.0	18	72	20	69	47	2	0	49	1.16
1877358--1877464	54	2.0	54	81	3	126	48	1	1	47	1.23
1877420--1877474	14	3.6	14	79	16	56	49	3	0	47	1.19
1884867--1884892	2	13.0	2	100	0	52	50	0	0	50	1.00
1886799--1886895	48	2.0	48	97	0	185	27	12	16	43	1.84
1890956--1891009	6	9.0	6	95	0	99	16	64	0	18	1.29
1895129--1895345	72	3.0	72	82	0	227	29	17	27	25	1.98
1896573--1896744	87	2.0	87	92	0	290	33	22	22	22	1.98
1897957--1898002	11	4.2	11	80	8	58	52	0	0	47	1.00
1897946--1897998	21	2.5	21	87	9	72	45	0	0	54	0.99
1903291--1903323	2	16.5	2	100	0	66	48	0	0	51	1.00
1906112--1906176	32	2.0	32	88	5	96	20	18	10	50	1.76
1906335--1906365	7	4.6	7	96	4	55	0	0	35	64	0.94
1910580--1910634	19	3.1	18	73	21	53	54	0	1	43	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1918156--1918216	16	3.7	16	73	6	59	40	0	0	59	0.98
1918132--1918239	33	3.3	33	75	12	89	42	0	0	55	1.12
1920498--1920534	2	19.0	2	94	5	67	51	0	0	48	1.00
1920920--1920948	2	14.5	2	100	0	58	51	0	0	48	1.00
1926430--1926488	24	2.5	24	78	13	68	50	0	0	49	1.00
1928552--1928604	18	2.8	19	80	8	72	43	7	0	49	1.31
1928822--1928866	22	2.1	21	84	12	56	44	6	0	48	1.29
1928839--1928960	32	3.8	32	70	11	108	50	8	4	37	1.52
1934041--1934070	13	2.3	13	100	0	60	33	10	20	36	1.86
1936139--1936186	21	2.3	21	82	13	64	47	0	2	50	1.12
1943604--1943683	26	3.1	26	96	0	151	47	21	3	27	1.67
1943613--1943683	15	5.3	15	66	30	61	47	21	2	28	1.64
1947999--1948063	30	2.1	32	82	5	80	43	4	0	52	1.22
1949432--1949481	26	1.9	26	87	0	73	54	0	2	44	1.11
1949758--1949794	18	2.0	19	85	15	51	51	0	2	45	1.15
1958010--1958047	11	3.2	12	85	14	53	68	0	0	31	0.90
1958011--1958071	25	2.5	24	78	17	65	68	1	0	29	0.99
1960113--1960138	2	13.0	2	100	0	52	50	0	0	50	1.00
1964635--1964680	17	2.6	17	86	13	58	21	2	2	73	1.04
1964791--1964849	29	2.0	30	83	9	77	38	0	0	61	0.96
1964835--1964884	24	2.1	24	88	3	75	30	2	0	68	1.01
1964857--1964891	16	2.2	16	90	10	54	28	2	0	68	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1964845--1964905	24	2.5	24	86	7	79	31	1	1	65	1.12
1965738--1965776	13	3.0	13	84	0	51	64	5	0	30	1.15
1965959--1966021	27	2.2	29	83	10	78	46	7	6	39	1.59
1966392--1966666	136	2.0	136	90	2	437	36	15	18	29	1.92
1974697--1974738	20	2.1	20	86	8	59	64	4	21	9	1.42
1982030--1982082	17	3.1	18	91	8	92	50	0	0	49	1.00
1982045--1982090	17	2.5	18	86	13	51	52	0	0	47	1.00
1982060--1982114	20	2.8	20	83	5	67	61	0	0	38	0.96
1982042--1982119	20	3.8	20	73	14	61	55	0	0	44	0.99
1983084--1983136	23	2.3	23	81	15	65	35	0	0	64	0.94
1983081--1983144	10	6.1	10	76	20	60	34	0	0	65	0.93
1983094--1983158	23	2.8	23	85	2	85	30	0	0	69	0.89
1983360--1983393	16	2.2	16	90	10	54	52	0	0	47	1.00
1983372--1983417	23	2.0	23	91	0	74	43	0	0	56	0.99
1984076--1984119	14	2.8	16	76	16	56	34	0	0	65	0.93
1984881--1984928	18	2.9	16	79	11	51	41	6	0	52	1.27
1985633--1985691	17	3.4	17	68	25	50	44	3	1	50	1.28
1985625--1985699	36	2.1	36	84	0	96	42	5	1	50	1.33
1989984--1990014	5	6.2	5	100	0	62	61	0	0	38	0.96
1990620--1990665	23	2.0	23	91	0	74	39	13	4	43	1.63
1993069--1993112	10	4.7	9	81	10	52	34	0	0	65	0.93
1993069--1993111	19	2.3	19	88	8	61	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1993139--1993182	11	3.9	11	88	8	54	54	0	2	43	1.12
1994588--1994646	21	2.7	23	77	17	63	45	10	10	33	1.72
1994710--1994735	13	2.0	13	100	0	52	15	0	0	84	0.62
2009448--2009487	14	2.9	14	76	0	53	65	0	2	32	1.06
2010063--2010092	16	1.9	15	93	6	51	80	0	3	16	0.85
2015478--2015512	16	2.3	15	90	5	52	31	0	0	68	0.90
2015604--2015646	16	2.7	16	77	0	50	60	2	0	37	1.10
2015627--2015669	21	2.1	20	86	4	59	62	0	0	37	0.95
2018279--2018311	16	2.1	16	100	0	66	27	12	24	36	1.91
2030327--2030383	27	2.1	27	83	0	69	43	0	0	56	0.99
2030484--2030515	12	2.4	14	85	15	50	62	3	0	34	1.11
2031483--2031753	57	4.7	56	84	5	287	39	11	4	43	1.63
2031480--2031753	113	2.4	114	84	9	335	40	11	5	43	1.63
2032608--2032636	5	5.8	5	100	0	58	82	0	0	17	0.66
2032631--2032740	21	5.2	21	75	13	109	63	0	2	32	1.15
2032629--2032712	24	3.5	24	82	12	111	63	1	3	32	1.19
2032615--2032761	45	3.5	41	79	14	151	65	0	2	30	1.11
2032675--2032756	36	2.2	37	85	10	105	65	0	2	31	1.05
2033445--2033478	17	2.0	17	88	0	50	47	5	8	38	1.59
2033524--2033550	12	2.2	12	100	0	54	51	0	0	48	1.00
2034474--2034503	3	10.0	3	100	0	60	33	0	0	66	0.92
2035261--2035339	20	3.3	23	69	25	58	50	2	0	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2036555--2036589	15	2.5	14	86	13	54	34	0	0	65	0.93
2036601--2036635	15	2.3	15	85	0	52	45	5	0	48	1.26
2036732--2036789	20	3.2	19	79	20	70	58	0	0	41	0.98
2042542--2042585	20	2.2	20	84	8	54	56	6	9	27	1.55
2049236--2049303	31	2.2	31	81	5	75	48	2	0	48	1.16
2050008--2050053	24	1.9	24	82	8	58	15	17	10	56	1.67
2062297--2062340	2	23.0	2	90	9	74	50	0	0	50	1.00
2064336--2064400	9	7.4	9	80	13	50	40	0	13	46	1.44
2064329--2064374	22	2.1	22	100	0	92	43	0	13	43	1.43
2064345--2064400	18	3.2	16	79	18	58	39	0	14	46	1.44
2064336--2064401	22	3.2	22	80	18	72	40	0	13	45	1.44
2064391--2064438	22	2.1	24	92	7	82	39	4	6	50	1.47
2071005--2071041	2	18.5	2	88	0	56	48	2	2	45	1.30
2071473--2071522	22	2.3	22	85	0	64	62	6	0	32	1.20
2073296--2073322	6	4.5	6	100	0	54	18	0	14	66	1.25
2081424--2081756	105	3.2	105	82	2	339	26	15	27	30	1.96
2081600--2081841	105	2.3	105	80	6	276	27	16	26	28	1.97
2091140--2091196	19	2.9	19	80	14	62	0	12	5	82	0.82
2091140--2091183	20	2.3	19	88	4	61	0	11	4	84	0.77
2091973--2092011	6	6.3	6	86	13	53	64	0	0	35	0.94
2092070--2092114	12	3.5	14	74	20	53	48	0	4	46	1.22
2092224--2092261	13	3.0	13	80	3	51	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2092217--2092300	25	3.4	24	79	12	98	42	2	1	53	1.21
2094089--2094126	16	2.4	16	86	8	51	31	0	2	65	1.06
2094130--2094178	22	2.3	22	92	3	82	44	0	2	53	1.12
2097226--2097271	19	2.4	19	74	0	56	19	4	0	76	0.96
2097225--2097268	20	2.1	21	87	4	63	15	4	0	79	0.89
2098184--2098212	2	14.5	2	100	0	58	51	0	0	48	1.00
2100947--2101013	26	2.6	25	85	4	89	25	7	13	53	1.65
2107950--2107981	15	2.1	15	94	0	55	50	3	0	46	1.17
2107975--2108018	10	4.3	10	82	5	52	40	0	0	59	0.98
2107986--2108028	11	3.8	11	87	9	52	37	0	0	62	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91