genome.fa.s201.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  44  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7368531--7368593	23	2.7	23	97	0	117	42	0	3	53	1.16
7368934--7369009	37	2.1	37	80	9	84	52	1	1	44	1.17
7369016--7369878	181	4.8	180	77	5	761	41	9	7	40	1.67
7370197--7370276	23	3.4	23	65	13	56	53	3	2	40	1.32
7370309--7370439	19	6.5	21	69	28	58	51	0	0	47	1.11
7370308--7370435	15	8.5	15	69	21	56	51	0	0	46	1.11
7370374--7370438	19	3.4	19	74	25	66	52	0	1	46	1.10
7370407--7370451	19	2.3	19	84	3	54	48	0	2	48	1.13
7370374--7370455	35	2.2	38	81	16	102	50	0	1	48	1.08
7370697--7370739	20	2.0	20	86	8	59	51	2	2	44	1.27
7370984--7371039	23	2.4	23	76	5	60	51	1	0	46	1.11
7371246--7371275	14	2.1	14	93	0	51	50	10	0	40	1.36
7371320--7372130	176	4.5	175	76	8	647	39	8	11	40	1.72
7371434--7372101	181	3.7	175	74	9	467	40	8	10	40	1.70
7372081--7372282	101	2.0	101	95	0	359	40	7	9	42	1.66
7372226--7372491	143	1.9	142	87	3	392	40	7	9	42	1.65
7373407--7374175	181	4.3	181	79	6	776	39	8	10	41	1.69
7373417--7374164	362	2.1	359	81	5	866	40	8	10	41	1.68
7373944--7374404	229	2.0	228	79	3	498	39	9	10	41	1.72
7376186--7376259	15	4.8	15	74	21	55	56	2	2	37	1.28
7376266--7376320	24	2.3	23	78	6	56	58	3	0	38	1.16
7376599--7376650	26	2.0	26	88	3	79	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7376894--7376951	18	3.5	18	70	29	65	44	6	0	48	1.29
7376901--7376971	31	2.3	31	100	0	142	46	5	0	47	1.26
7377260--7377332	26	3.0	24	77	15	69	47	4	2	45	1.36
7377380--7377476	48	2.0	49	82	11	119	51	1	1	46	1.14
7377404--7377476	25	2.9	24	79	15	76	52	1	0	46	1.09
7377430--7377473	9	4.8	9	81	15	54	50	0	0	50	1.00
7377430--7377479	16	3.1	16	85	8	57	50	0	0	50	1.00
7377862--7377916	28	1.9	29	85	10	78	49	0	1	49	1.11
7378278--7378334	20	2.8	20	76	21	55	50	0	3	45	1.18
7378642--7378674	14	2.4	14	90	5	50	45	6	0	48	1.27
7379118--7379217	22	4.5	22	69	20	75	49	2	1	48	1.19
7379104--7379178	22	3.2	23	71	19	57	56	0	1	42	1.08
7379233--7379284	25	2.1	25	85	0	68	51	0	0	48	1.00
7380096--7380128	7	4.9	7	85	7	50	42	3	0	54	1.15
7380483--7380568	12	6.9	13	68	17	58	46	0	0	53	1.00
7380479--7380586	32	3.4	31	80	9	110	47	0	0	50	1.13
7380772--7380810	20	2.0	20	85	10	53	51	0	0	48	1.00
7380941--7380996	21	2.6	22	78	15	64	55	1	3	39	1.28
7381528--7381591	33	2.0	31	84	6	83	48	3	0	48	1.17
7381691--7381749	30	2.0	29	83	9	75	35	0	6	57	1.25
7381695--7381759	29	2.3	28	77	12	71	38	0	4	56	1.20
7382282--7382370	23	3.9	23	74	12	67	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7382325--7382379	11	5.0	11	79	14	60	52	0	0	47	1.00
7382293--7382378	22	3.9	22	75	13	79	54	0	0	45	0.99
7382510--7382548	14	2.8	14	84	0	51	48	0	0	51	1.00
7382575--7382614	21	1.9	21	89	0	62	62	0	0	37	0.95
7382584--7382638	16	3.7	16	69	18	55	54	1	0	43	1.10
7382667--7382748	14	5.8	14	70	11	51	53	0	2	43	1.13
7382667--7382748	29	2.9	30	71	10	84	53	0	2	43	1.13
7382947--7383003	21	2.8	21	78	2	62	47	5	0	47	1.24
7383318--7383363	14	3.2	14	78	6	56	50	2	2	45	1.26
7383850--7384227	181	2.1	180	86	3	510	44	11	7	37	1.67
7384308--7384410	27	3.8	28	74	22	85	45	0	0	52	1.13
7384319--7384426	49	2.2	49	81	8	121	46	1	0	50	1.18
7384485--7384530	16	2.8	17	80	9	51	54	4	2	39	1.32
7384542--7384585	22	2.0	22	86	0	61	43	0	4	52	1.22
7385458--7385532	33	2.3	32	80	15	75	41	4	1	53	1.28
7385521--7385628	50	2.2	50	80	8	121	49	1	0	49	1.11
7385578--7385615	21	1.9	21	84	10	53	52	2	0	44	1.14
7385582--7385620	21	1.9	20	89	5	60	51	0	0	48	1.00
7385583--7385630	21	2.3	21	82	10	55	52	0	0	47	1.00
7385659--7385726	36	1.9	34	82	5	82	45	1	2	50	1.26
7385767--7385825	27	2.1	28	81	9	68	42	8	1	47	1.44
7385851--7385920	17	3.9	17	77	15	61	41	1	1	55	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7385871--7385920	21	2.3	21	86	3	73	40	0	2	58	1.10
7385940--7386008	28	2.4	27	83	11	77	49	0	5	44	1.26
7385984--7386029	19	2.3	21	81	7	60	54	0	2	43	1.12
7386002--7386041	17	2.3	17	87	12	55	52	2	0	45	1.14
7386120--7386151	15	2.1	15	94	0	55	40	0	0	59	0.97
7387112--7387244	36	3.7	36	74	10	112	47	3	2	47	1.30
7387218--7387282	17	3.9	16	71	16	60	47	3	3	46	1.33
7387180--7387276	33	2.9	34	75	20	96	47	1	4	47	1.28
7392928--7392998	33	2.2	33	89	0	106	26	16	19	36	1.94
7393205--7393444	88	2.7	88	82	4	281	27	12	15	45	1.82
7393205--7393491	44	6.6	44	78	5	253	26	11	16	45	1.82
7393619--7393651	17	1.9	17	93	0	57	78	0	21	0	0.75
7394050--7394082	14	2.4	14	90	5	50	15	0	12	72	1.12
7394649--7394712	25	2.6	25	82	5	76	42	0	9	48	1.35
7402494--7402552	29	2.0	29	96	0	109	44	10	15	30	1.79
7406034--7406059	13	2.0	13	100	0	52	38	0	0	61	0.96
7407522--7407550	2	15.0	2	92	7	51	51	0	0	48	1.00
7408052--7408081	2	15.0	2	92	0	51	46	0	0	53	1.00
7408127--7408180	26	2.1	26	92	0	90	9	5	12	72	1.27
7412374--7412405	2	16.0	2	100	0	64	50	0	0	50	1.00
7413330--7413387	23	2.4	24	82	5	73	34	6	3	55	1.44
7413383--7413456	6	11.3	6	76	18	51	70	1	1	27	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7417469--7417510	12	3.2	13	76	10	50	35	0	2	61	1.09
7418417--7418472	21	2.8	21	71	15	55	55	3	0	41	1.17
7418417--7418511	41	2.3	42	76	8	104	51	3	0	45	1.17
7418521--7418613	12	7.7	12	68	13	57	45	4	1	49	1.29
7418522--7418604	30	2.9	28	78	10	78	45	4	1	48	1.31
7418789--7418833	22	2.0	22	86	0	63	44	2	4	48	1.35
7420399--7420455	29	2.0	29	83	12	75	54	0	7	38	1.28
7420850--7420882	17	1.9	17	88	11	50	39	0	0	60	0.97
7421090--7421144	26	2.0	26	86	10	74	52	0	0	47	1.00
7421260--7421319	24	2.5	24	86	8	77	51	3	1	43	1.28
7421327--7421378	22	2.4	22	83	6	61	48	1	0	50	1.12
7422026--7422075	8	5.8	9	77	13	52	52	0	2	46	1.12
7422033--7422097	29	2.3	27	76	10	67	47	0	3	49	1.17
7422236--7422274	14	2.8	14	85	11	53	56	0	2	41	1.13
7422245--7422333	32	2.7	35	79	10	105	53	2	4	39	1.33
7422516--7422568	21	2.5	22	75	12	56	49	1	5	43	1.37
7422523--7422572	21	2.4	21	80	6	57	52	2	4	42	1.31
7422980--7423039	23	2.5	24	75	21	63	50	1	1	46	1.21
7423496--7423545	12	4.1	13	80	10	61	56	2	0	42	1.11
7423515--7423554	20	2.0	21	90	5	64	52	5	0	42	1.23
7423651--7423752	25	4.0	25	71	13	66	46	2	1	49	1.28
7423834--7423909	39	2.0	38	82	7	91	43	2	0	53	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7423909--7423951	23	1.9	22	85	4	59	65	2	0	32	1.06
7423894--7424821	181	5.2	179	76	7	641	42	8	6	41	1.62
7424892--7424924	14	2.4	14	94	0	57	48	0	0	51	1.00
7424962--7424997	18	2.0	18	88	0	54	55	0	0	44	0.99
7425023--7425073	27	1.9	26	92	4	84	49	3	0	47	1.20
7425251--7425315	19	3.2	20	79	12	62	60	1	1	36	1.16
7425269--7425321	19	2.6	21	80	20	67	60	0	0	39	0.97
7425661--7426635	502	1.9	501	86	4	1392	30	12	18	38	1.87
7439224--7439267	22	2.0	22	95	0	79	31	11	13	43	1.80
7443103--7443146	22	2.0	22	95	0	79	31	11	13	43	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91