genome.fa.s201.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  33  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5681673--5681776	53	2.0	53	100	0	208	47	7	25	19	1.76
5687433--5687505	38	1.9	38	86	10	105	36	8	8	46	1.64
5687704--5687787	29	3.0	28	67	11	73	32	13	10	44	1.78
5688229--5688277	20	2.4	20	83	16	57	59	12	0	28	1.34
5688241--5688281	11	4.1	10	80	20	50	56	12	0	31	1.36
5688699--5688784	21	4.2	20	78	12	79	72	0	3	24	1.01
5688777--5688865	15	5.9	15	72	26	57	65	2	11	21	1.36
5688714--5688872	40	3.8	41	75	17	141	68	1	8	22	1.23
5688711--5688873	4	39.5	4	69	17	77	68	1	7	22	1.22
5689117--5689207	39	2.3	40	80	3	112	37	16	13	32	1.87
5694609--5694818	61	3.4	60	78	8	174	39	4	16	39	1.70
5695535--5695706	72	2.3	74	80	9	199	51	8	6	33	1.58
5695639--5695930	114	2.6	112	81	4	315	48	6	11	33	1.65
5695896--5696080	74	2.5	73	82	4	230	45	5	12	35	1.67
5703928--5703964	18	2.1	18	100	0	74	35	5	5	54	1.47
5704683--5704727	20	2.5	18	86	13	58	37	0	0	62	0.96
5709624--5709690	25	2.8	23	82	12	82	73	4	16	5	1.20
5710619--5710683	29	2.3	28	80	15	71	55	3	0	41	1.15
5711667--5711731	26	2.4	28	73	21	75	76	3	7	12	1.10
5711677--5711714	18	2.1	18	90	0	58	84	0	10	5	0.77
5713485--5713516	16	2.0	16	93	0	55	31	28	18	21	1.97
5724786--5724825	16	2.5	16	87	0	53	87	0	7	5	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5725644--5725703	22	2.8	20	76	11	57	35	1	1	61	1.16
5726427--5726481	22	2.4	23	81	3	67	47	1	0	50	1.11
5727134--5727412	97	2.9	98	92	4	448	36	11	16	35	1.84
5728355--5728397	21	2.0	21	91	8	70	41	0	0	58	0.98
5728355--5728407	21	2.5	22	85	11	58	41	0	0	58	0.98
5729140--5729169	15	2.1	14	93	6	51	40	0	0	60	0.97
5730919--5730953	12	2.9	12	82	0	52	82	8	5	2	0.91
5731536--5731586	22	2.3	22	80	12	61	33	0	1	64	1.05
5735796--5735870	18	4.2	18	78	0	87	36	32	4	28	1.76
5735800--5735869	36	1.9	36	85	5	97	37	30	4	28	1.76
5738177--5738220	14	3.2	14	80	6	63	63	0	2	34	1.07
5746747--5746895	77	2.0	74	81	7	174	22	6	17	53	1.66
5747409--5747461	28	1.9	27	81	11	63	37	11	22	28	1.89
5748180--5748249	24	2.9	24	78	0	68	41	5	27	25	1.78
5750880--5750973	42	2.3	41	76	9	100	19	25	7	47	1.75
5751522--5751600	32	2.5	32	85	4	97	26	6	6	60	1.45
5751553--5751600	14	3.0	16	76	17	55	25	6	8	60	1.49
5752858--5752891	17	2.0	17	94	0	59	29	8	0	61	1.26
5753195--5753219	10	2.5	10	100	0	50	16	0	0	84	0.63
5754695--5754987	44	6.7	44	79	5	292	44	15	13	26	1.84
5754695--5754987	88	3.3	88	84	2	367	44	15	13	26	1.84
5754709--5754996	132	2.2	132	82	5	334	43	15	13	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5755094--5755143	19	2.7	18	78	6	55	38	16	8	38	1.78
5755162--5755225	33	1.9	33	84	6	85	43	12	9	34	1.75
5755477--5755569	44	2.1	46	86	7	131	36	19	10	33	1.86
5755571--5755652	44	1.9	42	87	5	119	34	15	13	36	1.87
5755576--5755651	20	3.5	22	72	17	68	35	15	13	35	1.87
5755721--5755767	23	2.0	23	88	8	69	46	14	8	29	1.74
5756071--5756752	145	4.7	145	85	4	749	38	12	15	32	1.85
5760847--5760895	17	2.9	16	82	8	53	83	0	12	4	0.77
5761352--5761411	27	2.4	24	75	20	59	76	0	20	3	0.92
5761746--5761802	17	3.3	17	83	11	64	77	0	12	10	1.00
5762413--5762482	22	3.2	22	79	4	79	35	22	20	21	1.96
5762689--5762990	97	3.1	97	86	0	408	36	20	15	27	1.93
5762757--5762897	33	4.3	33	69	16	105	34	21	17	26	1.95
5762689--5763056	97	3.8	97	83	1	405	36	19	15	28	1.92
5763077--5763199	33	3.6	34	77	10	126	37	17	9	35	1.82
5763197--5763245	23	2.2	23	88	3	73	32	16	22	28	1.95
5763389--5763564	37	4.8	37	78	5	133	18	15	14	51	1.76
5763460--5763564	36	2.9	36	82	1	120	20	14	10	54	1.69
5763610--5763645	18	2.0	18	94	0	63	83	8	2	5	0.89
5765112--5765165	27	2.0	28	82	10	67	27	3	5	62	1.34
5765229--5765260	4	8.5	4	86	13	50	78	0	0	21	0.76
5765203--5765260	10	5.5	10	76	11	53	72	1	3	22	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5765780--5765842	29	2.1	30	85	2	83	50	26	1	20	1.57
5765824--5765881	15	3.8	15	75	4	53	48	31	1	18	1.59
5765793--5765871	30	2.7	30	80	5	81	48	30	2	18	1.62
5765795--5765898	23	4.5	23	74	10	72	47	30	2	19	1.64
5765927--5766024	8	12.4	8	72	12	78	48	32	2	16	1.57
5765914--5765981	25	2.7	24	84	8	82	41	38	1	19	1.60
5765927--5766040	16	7.2	16	76	12	85	49	31	1	17	1.57
5765976--5766018	22	2.0	22	86	4	61	53	30	2	13	1.53
5765927--5766034	37	2.7	39	80	7	112	48	33	1	16	1.57
5765862--5766040	8	22.4	8	68	14	75	45	31	1	20	1.61
5765992--5766041	15	3.3	15	91	5	75	56	28	0	16	1.41
5767593--5767630	20	1.9	20	94	0	67	23	26	18	31	1.97
5779023--5779121	52	1.9	52	95	0	180	33	4	14	48	1.62
5779037--5779119	26	3.2	26	63	13	62	34	3	12	49	1.57
5783548--5783587	20	2.0	20	85	9	55	47	2	0	50	1.14
5783548--5783586	19	2.0	20	85	5	53	48	2	0	48	1.15
5784026--5784116	18	5.2	17	69	16	62	54	2	1	41	1.19
5790084--5790150	24	2.8	24	97	2	127	44	4	2	47	1.38
5793347--5793979	218	2.9	214	82	4	723	25	10	10	53	1.67
5795495--5795529	6	6.0	6	90	3	54	20	0	11	68	1.20
5796183--5796325	24	6.1	24	77	14	138	31	3	9	55	1.50
5796188--5796256	21	3.2	20	66	25	50	31	1	10	56	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5796183--5796311	47	2.8	45	82	12	158	32	3	9	55	1.48
5796280--5796356	20	3.7	20	82	7	82	32	3	9	54	1.50
5796322--5796573	55	4.6	52	71	19	176	30	5	11	53	1.58
5796363--5796509	31	5.1	31	73	18	145	29	4	12	53	1.58
5796394--5796470	23	3.1	23	72	25	75	27	3	11	57	1.52
5796337--5796564	83	2.7	83	94	2	393	28	5	12	53	1.60
5796476--5796531	20	2.6	22	83	8	71	30	5	10	53	1.58
5797297--5797632	58	5.7	57	79	10	340	35	12	6	44	1.69
5797339--5797630	56	5.1	55	80	9	316	36	13	6	44	1.69
5797646--5797748	35	2.8	36	81	10	104	79	1	5	12	0.99
5797648--5797748	53	2.0	51	82	9	125	79	1	5	12	1.00
5797681--5797799	17	6.9	17	69	18	61	73	3	2	20	1.09
5798721--5798767	3	15.7	3	82	12	53	68	0	0	31	0.90
5798718--5798885	4	42.2	4	70	14	66	64	3	2	29	1.22
5798722--5798784	31	1.9	31	87	9	90	66	1	0	31	1.01
5798725--5798783	19	3.3	18	76	23	63	66	1	0	32	1.02
5798729--5798796	21	3.4	21	80	17	67	64	2	0	32	1.08
5798755--5798827	28	2.6	29	78	10	80	67	4	1	27	1.17
5798718--5798885	15	11.6	15	66	21	74	64	3	2	29	1.22
5798881--5798942	22	2.8	23	87	7	83	75	3	3	17	1.07
5798898--5798942	17	2.6	16	82	10	54	77	2	0	20	0.87
5799133--5799387	41	6.1	41	90	1	357	35	23	16	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5799133--5799387	83	3.1	82	89	2	366	35	23	16	23	1.95
5799154--5799387	124	1.9	125	92	0	398	36	23	16	23	1.94
5804732--5804771	19	2.1	19	86	9	55	75	0	2	22	0.93
5809149--5809190	11	3.7	11	81	15	50	71	0	2	26	0.98
5809914--5810105	96	2.0	94	90	4	305	46	12	11	28	1.77
5810088--5810184	41	2.3	41	81	8	108	42	15	7	35	1.75
5810171--5810305	41	3.3	41	81	3	137	42	15	13	28	1.85
5810258--5810361	48	2.1	48	78	5	120	52	13	8	25	1.68
5810308--5810437	42	3.1	41	81	4	152	47	16	10	24	1.79
5810308--5810487	84	2.1	87	82	8	215	46	18	10	25	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91