genome.fa.s201.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  63  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10451442--10451488	20	2.4	20	78	3	60	25	19	25	29	1.98
10451934--10451968	18	1.9	18	88	0	52	77	5	2	14	1.07
10464043--10464118	24	3.1	24	68	25	59	48	0	2	48	1.15
10464089--10464144	29	2.0	28	85	3	76	53	0	0	46	1.00
10464725--10464792	16	4.0	17	77	11	68	41	4	2	51	1.37
10465907--10465949	13	3.4	13	84	12	54	69	0	4	25	1.07
10466844--10467090	83	3.0	82	79	7	282	39	6	4	50	1.47
10467569--10467626	30	1.9	30	86	6	82	43	0	1	55	1.10
10467569--10467617	16	3.1	16	75	19	50	44	0	2	53	1.12
10467957--10468014	12	5.0	11	76	16	55	67	0	0	32	0.91
10467956--10468014	18	3.4	18	72	25	63	66	0	0	33	0.92
10467970--10468028	20	3.2	20	77	15	56	67	0	1	30	1.00
10467960--10468014	20	2.7	19	78	21	51	67	0	0	32	0.91
10467962--10468014	17	3.2	16	76	10	61	67	0	0	32	0.91
10468192--10468255	25	2.4	27	79	10	69	35	6	14	43	1.70
10472252--10472278	14	1.9	14	100	0	54	51	0	0	48	1.00
10473622--10473697	37	2.1	37	94	0	134	17	19	9	53	1.70
10477759--10478026	122	2.2	122	85	2	376	31	4	25	38	1.77
10478749--10478804	28	2.0	28	96	0	103	30	7	16	46	1.73
10478888--10478948	29	2.1	29	100	0	122	37	3	22	36	1.71
10484476--10484517	22	2.0	22	90	4	68	78	4	7	9	1.08
10484478--10484525	22	2.2	21	82	10	53	81	6	8	4	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10484807--10484869	16	4.1	15	70	24	51	77	3	3	15	1.02
10485498--10485547	23	2.1	24	85	3	66	48	0	0	52	1.00
10487180--10487232	26	2.0	26	85	0	70	41	0	0	58	0.98
10487207--10487262	28	2.0	29	86	10	80	48	1	1	48	1.22
10487419--10487455	17	2.1	19	90	10	60	16	0	0	83	0.64
10487469--10487497	14	2.1	14	93	6	51	75	3	0	20	0.94
10487843--10487877	18	1.9	18	88	0	52	22	2	8	65	1.34
10488366--10488424	30	2.0	30	96	0	109	50	10	3	35	1.53
10489734--10489759	3	8.7	3	100	0	52	34	0	0	65	0.93
10490207--10490259	21	2.4	23	84	9	67	22	11	1	64	1.36
10492794--10492825	16	2.0	16	100	0	64	12	0	18	68	1.20
10495905--10495943	21	2.0	20	85	10	53	33	5	0	61	1.18
10495970--10496024	24	2.3	24	78	12	60	56	7	12	23	1.61
10496130--10496170	2	20.5	2	94	0	73	46	0	2	51	1.14
10499458--10499500	2	21.5	2	100	0	86	51	0	0	48	1.00
10506492--10506538	24	1.9	25	86	4	69	63	4	0	31	1.13
10511561--10511617	16	3.6	15	75	11	51	78	1	8	10	1.02
10515119--10515155	8	4.6	8	86	0	56	43	0	0	56	0.99
10515119--10515172	14	3.6	16	80	14	62	46	0	0	53	1.00
10515145--10515196	23	2.5	22	87	12	74	48	0	0	51	1.00
10516325--10516382	28	2.0	29	86	3	82	51	1	8	37	1.43
10518181--10518322	21	6.8	20	80	8	117	46	6	0	46	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10518364--10518499	29	4.8	28	76	8	123	47	4	1	46	1.31
10518559--10518597	11	3.7	11	93	6	64	46	0	0	53	1.00
10518599--10518759	10	15.8	10	67	12	78	49	2	1	46	1.23
10518601--10518759	20	7.8	20	83	2	140	49	2	1	46	1.23
10518591--10518759	61	2.7	62	76	11	159	49	2	1	46	1.24
10518592--10518759	41	4.0	42	80	10	166	49	2	1	46	1.24
10518785--10519098	11	31.4	10	67	20	78	42	2	2	52	1.28
10518785--10518821	18	2.1	18	94	0	65	43	0	0	56	0.99
10518778--10518834	29	2.0	29	96	0	105	43	0	0	56	0.99
10518947--10519004	7	8.4	7	74	16	50	36	0	1	62	1.06
10518971--10519012	14	3.0	14	85	0	57	38	0	0	61	0.96
10519006--10519099	39	2.4	39	84	8	111	44	2	1	52	1.20
10519040--10519083	18	2.4	18	80	0	52	47	2	2	47	1.27
10518921--10519092	28	6.0	28	69	20	88	43	2	1	52	1.21
10519021--10519132	28	3.9	28	73	16	68	44	1	3	50	1.29
10519146--10519221	27	3.0	25	74	14	82	40	1	1	56	1.16
10519803--10519910	34	3.1	33	81	12	119	37	13	12	35	1.84
10520282--10520340	17	3.5	17	78	13	52	77	1	10	10	1.05
10520300--10520342	18	2.4	17	82	17	52	83	0	9	6	0.80
10520899--10520958	5	11.8	5	77	13	52	13	3	3	80	0.97
10520922--10520973	27	2.0	27	85	11	72	13	9	1	75	1.14
10521097--10521155	21	2.8	21	81	2	73	35	6	8	49	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10521139--10521198	21	2.8	21	79	5	66	33	5	10	51	1.57
10522014--10522120	11	10.5	11	72	17	63	38	1	1	57	1.20
10522016--10522112	14	7.3	14	67	19	55	37	1	2	59	1.16
10522059--10522168	30	3.8	28	72	14	82	40	3	0	55	1.24
10525392--10525852	59	7.7	58	83	11	544	33	13	8	45	1.72
10525881--10525918	21	1.9	20	89	10	60	81	0	0	18	0.69
10526831--10526882	22	2.4	22	81	9	61	61	1	11	25	1.40
10527150--10527195	20	2.4	19	86	13	67	0	2	8	89	0.57
10527151--10527193	22	2.0	22	90	0	68	0	2	9	88	0.60
10527158--10527195	13	3.2	12	82	10	51	0	2	7	89	0.57
10527202--10527612	42	10.0	42	88	7	587	38	22	17	21	1.93
10527202--10527612	123	3.3	121	88	8	587	38	22	17	21	1.93
10527239--10527612	165	2.3	165	96	2	693	38	21	17	22	1.93
10528824--10528888	20	3.1	20	82	10	69	3	15	0	81	0.81
10528816--10528880	31	2.1	30	86	8	87	4	15	0	80	0.88
10528832--10528888	9	5.8	9	77	22	53	1	14	0	84	0.71
10532748--10533031	65	4.6	59	86	6	331	33	12	7	46	1.70
10532750--10532988	65	3.8	64	87	9	352	32	12	7	48	1.68
10533160--10533209	24	2.1	24	85	7	66	86	4	2	8	0.78
10534008--10534074	34	2.0	32	82	11	80	68	1	8	20	1.25
10534037--10534095	23	2.6	21	80	15	64	66	1	8	23	1.29
10534119--10534195	28	2.6	29	75	10	75	64	1	5	28	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10542943--10542983	20	2.1	20	86	13	59	39	2	4	53	1.35
10546707--10546736	5	6.0	5	100	0	60	80	0	0	20	0.72
10546965--10547013	24	2.1	23	85	7	64	14	2	12	71	1.23
10547279--10547328	7	7.3	7	78	13	59	64	0	2	34	1.05
10547279--10547328	13	3.7	13	77	17	57	64	0	2	34	1.05
10547279--10547332	28	1.9	28	92	7	92	62	0	1	35	1.06
10550078--10550247	80	2.1	80	96	0	313	38	4	21	35	1.74
10550641--10550728	43	2.0	43	91	4	142	34	15	11	38	1.84
10559535--10559605	34	2.1	34	94	0	124	36	7	15	40	1.74
10564710--10564765	24	2.3	24	93	0	94	37	8	28	25	1.86
10570345--10570443	51	2.0	49	92	4	162	28	13	12	46	1.78
10576433--10576485	12	4.2	13	81	13	67	32	0	0	67	0.91
10576438--10576481	20	2.2	20	84	8	54	31	0	0	68	0.90
10576491--10576531	22	1.9	21	85	5	55	51	0	0	48	1.00
10577479--10577520	20	2.1	20	95	0	75	33	11	9	45	1.73
10583794--10583832	16	2.5	16	91	4	62	28	0	0	71	0.86
10586668--10586705	19	2.0	20	89	5	60	31	0	5	63	1.17
10587296--10587339	17	2.6	17	81	0	61	36	0	9	54	1.32
10588090--10588155	12	5.3	12	75	22	57	68	0	0	31	0.90
10588113--10588162	16	3.1	16	81	16	59	72	0	0	28	0.86
10588091--10588155	24	2.8	24	84	9	73	69	0	0	30	0.89
10588871--10588904	18	1.9	17	88	5	50	76	2	5	14	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10592127--10593958	150	12.3	150	88	4	2789	25	32	14	27	1.95
10596220--10596282	31	2.0	31	93	0	108	44	11	15	28	1.81
10596849--10596880	3	10.7	3	100	0	64	68	0	0	31	0.90
10598379--10598472	34	2.8	33	82	9	109	36	17	10	36	1.84
10600621--10600778	64	2.5	62	77	10	158	36	13	13	36	1.85
10601222--10601425	64	3.2	64	73	14	147	32	11	14	42	1.81
10608650--10608685	16	2.2	16	90	0	54	38	0	0	61	0.96
10619875--10620002	64	2.0	65	92	4	215	33	14	17	34	1.90
10626549--10626581	12	2.5	13	90	9	50	66	0	0	33	0.92
10629225--10629351	62	2.1	62	84	8	163	16	13	14	55	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91