genome.fa.s201.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  73  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12000710--12000783	12	6.0	12	74	24	57	22	2	4	70	1.17
12000702--12000769	24	2.8	26	75	18	74	22	0	5	72	1.06
12000679--12000770	41	2.2	42	83	7	109	20	2	4	72	1.12
12001016--12001045	11	2.7	11	89	0	51	83	3	0	13	0.77
12004295--12004328	17	2.0	17	88	0	50	70	5	0	23	1.09
12004767--12005215	221	2.1	216	79	7	478	53	6	9	31	1.58
12006697--12006736	21	1.9	21	100	0	80	42	10	22	25	1.84
12009348--12009393	18	2.5	19	82	6	60	54	0	0	45	0.99
12009351--12009401	26	2.0	26	92	0	84	50	0	0	49	1.00
12010970--12011022	23	2.4	21	79	11	61	45	1	5	47	1.37
12017664--12017717	25	2.2	24	87	9	74	53	9	18	18	1.70
12017861--12017904	22	2.0	22	95	0	79	45	11	9	34	1.72
12021633--12021687	25	2.2	25	86	0	74	38	16	23	21	1.93
12021644--12021695	25	2.1	25	85	0	68	44	17	19	19	1.87
12021959--12022002	22	2.0	22	90	0	70	43	11	11	34	1.77
12023150--12023201	25	2.2	23	83	12	70	32	11	25	30	1.91
12025351--12025394	22	2.0	22	91	8	72	45	13	9	31	1.75
12029032--12029090	25	2.4	25	86	5	77	42	16	25	15	1.88
12044079--12044141	31	2.0	31	87	0	90	50	11	3	34	1.54
12045209--12045256	25	1.9	25	83	8	62	37	10	6	45	1.64
12048384--12048424	21	2.0	21	85	9	57	53	12	4	29	1.58
12053027--12053061	18	1.9	18	94	0	61	17	8	8	65	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12064235--12064272	10	3.7	10	89	3	58	47	0	0	52	1.00
12064235--12064308	21	3.5	20	69	18	51	45	0	1	52	1.09
12068615--12068656	9	4.7	9	91	5	59	21	0	9	69	1.17
12068615--12068677	18	3.5	19	83	12	71	25	0	7	66	1.18
12069150--12069208	31	1.9	31	89	6	93	27	20	22	30	1.98
12069186--12069230	19	2.4	19	80	0	54	22	24	28	24	1.99
12069601--12069648	1	48.0	1	87	0	69	6	0	0	93	0.34
12069601--12069656	11	5.3	11	91	2	80	8	0	0	91	0.43
12072432--12072465	16	2.0	16	88	11	50	70	14	14	0	1.17
12073849--12073911	31	2.0	31	87	0	90	50	11	3	34	1.54
12075341--12075374	16	2.2	16	89	5	52	55	0	0	44	0.99
12077335--12077386	27	1.9	27	92	7	88	46	3	11	38	1.59
12080958--12080988	15	2.1	15	93	0	53	25	6	9	58	1.54
12081387--12081429	15	3.1	14	80	19	54	55	0	0	44	0.99
12081398--12081423	12	2.2	12	100	0	52	50	0	0	50	1.00
12081865--12081967	53	1.9	53	98	0	197	46	25	7	20	1.77
12082742--12082785	19	2.3	19	96	0	79	18	13	13	54	1.71
12094074--12094112	20	2.0	20	89	0	60	38	0	0	61	0.96
12094121--12094154	16	2.1	17	88	5	52	44	0	0	55	0.99
12095538--12095593	21	2.9	18	73	14	58	32	3	35	28	1.74
12095547--12095588	21	2.0	21	90	0	66	30	2	40	26	1.69
12098858--12098917	27	2.4	25	79	17	70	56	13	0	30	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12099201--12099249	25	1.9	26	91	4	82	40	10	2	46	1.49
12099470--12099507	20	2.0	20	89	5	60	60	5	0	34	1.19
12099701--12099816	39	3.0	40	85	3	155	23	62	1	12	1.40
12104714--12104748	12	2.9	12	91	0	52	65	2	0	31	1.07
12105098--12105123	13	2.0	13	100	0	52	53	0	0	46	1.00
12118004--12118502	42	12.0	42	90	5	768	22	17	23	36	1.95
12118004--12118502	83	6.0	82	91	3	731	22	17	23	36	1.95
12118004--12118502	125	4.0	124	90	4	742	22	17	23	36	1.95
12118523--12118551	8	3.6	8	100	0	58	89	10	0	0	0.48
12118736--12118789	22	2.4	23	87	3	74	27	0	5	66	1.13
12119271--12119329	31	1.9	31	86	6	84	27	22	22	28	1.99
12119888--12120144	59	4.3	59	88	6	367	46	7	12	33	1.70
12119889--12120143	116	2.1	121	90	8	405	46	7	12	33	1.70
12120056--12120226	91	1.9	93	93	2	301	49	6	9	33	1.62
12120013--12120294	150	1.9	150	88	6	428	45	7	12	34	1.70
12120140--12120333	59	3.3	56	81	10	235	44	7	13	34	1.72
12120151--12120322	59	2.9	58	86	5	238	43	7	14	34	1.74
12121012--12121046	12	2.9	12	91	0	52	65	2	0	31	1.07
12127610--12127648	6	6.5	6	100	0	78	33	30	17	17	1.94
12128067--12128260	106	1.8	106	85	2	273	24	11	21	42	1.85
12132358--12132400	23	1.9	22	85	4	59	60	4	27	6	1.43
12132932--12132973	21	2.0	21	85	0	57	19	47	4	28	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12133967--12134003	2	18.5	2	100	0	74	48	0	0	51	1.00
12134679--12134766	25	3.3	25	78	18	97	23	14	14	46	1.82
12134699--12134761	31	2.0	31	96	0	117	22	14	12	50	1.76
12142345--12142391	23	2.1	23	88	4	69	53	2	0	44	1.12
12142399--12142449	25	2.1	24	85	10	68	45	3	0	50	1.20
12142496--12142529	16	2.1	16	94	0	59	47	2	11	38	1.55
12148390--12148436	21	2.2	21	85	7	60	40	2	2	55	1.24
12148455--12148479	1	25.0	1	100	0	50	100	0	0	0	0.00
12149623--12149707	30	2.8	30	85	7	102	34	4	1	60	1.25
12154854--12154893	20	2.0	21	85	14	57	45	5	12	37	1.64
12155359--12155401	22	1.9	23	86	13	63	39	0	0	60	0.97
12155666--12155713	24	2.0	24	92	4	80	35	0	2	62	1.07
12160383--12160412	13	2.3	13	94	0	51	56	26	6	10	1.57
12172797--12173115	174	1.8	175	90	0	514	41	4	5	48	1.46
12173050--12173121	30	2.5	29	77	8	76	41	1	2	54	1.23
12174417--12174464	19	2.4	19	82	6	51	50	0	2	47	1.12
12174559--12174627	29	2.4	28	83	11	79	72	1	1	24	1.01
12188657--12188705	21	2.3	21	75	6	55	32	8	12	46	1.71
12189033--12189139	53	2.0	53	90	0	169	42	3	6	47	1.47
12190779--12190883	52	2.0	52	83	3	131	27	21	8	41	1.82
12192890--12192942	11	4.8	11	95	0	97	20	0	28	50	1.48
12192979--12193121	52	2.8	50	81	6	162	40	9	23	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12193549--12193580	12	2.7	12	100	0	64	21	0	9	68	1.17
12196291--12196327	17	2.2	17	90	4	58	13	5	0	81	0.86
12197956--12198009	22	2.5	22	81	6	65	40	7	9	42	1.65
12198163--12198225	11	5.7	11	72	7	56	31	1	9	57	1.40
12198159--12198298	22	6.4	22	79	4	122	35	2	10	50	1.52
12198157--12198330	66	2.6	65	81	8	174	37	4	9	48	1.55
12198823--12198907	22	3.9	22	78	3	91	38	7	8	45	1.61
12198824--12198971	66	2.2	66	80	9	151	37	4	8	48	1.55
12198858--12198910	11	4.8	11	73	0	52	39	3	5	50	1.44
12198869--12198971	22	4.7	22	82	0	125	37	2	8	50	1.48
12198824--12198971	44	3.4	43	80	7	138	37	4	8	48	1.55
12198973--12199039	22	3.0	22	82	0	80	46	10	2	40	1.53
12199019--12199119	22	4.6	22	77	2	105	34	10	8	45	1.71
12198977--12199119	44	3.2	44	75	7	139	39	11	6	43	1.66
12199056--12199162	22	4.9	22	73	6	83	31	13	8	46	1.72
12199328--12199373	19	2.5	19	78	3	58	36	4	4	54	1.40
12199359--12199417	22	2.7	22	76	10	57	35	6	8	49	1.60
12199948--12200087	22	6.4	22	85	3	167	35	10	5	49	1.60
12199948--12200003	11	5.1	11	71	16	53	35	8	5	50	1.57
12200194--12200405	22	9.7	21	70	14	65	37	9	4	49	1.55
12200216--12200311	11	8.7	11	70	6	52	34	6	5	54	1.48
12200462--12200533	37	1.9	36	83	5	90	41	12	6	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12202983--12203069	34	2.6	34	84	0	111	39	16	11	33	1.84
12203050--12203125	34	2.2	34	85	0	107	38	15	10	35	1.82
12204894--12204965	32	2.2	32	92	0	117	45	9	13	30	1.76
12213307--12213649	41	8.4	41	83	6	401	42	19	12	25	1.86
12214208--12214239	11	3.1	11	82	17	50	37	9	25	28	1.87
12214949--12214985	8	4.3	9	86	6	51	0	8	2	89	0.58
12221449--12221495	23	2.1	22	92	4	76	44	4	23	27	1.72
12221462--12221525	17	3.6	17	69	24	51	50	3	20	26	1.63
12222612--12222640	10	3.0	10	95	5	51	20	0	0	79	0.74
12232465--12232533	21	3.3	21	76	6	61	33	13	11	42	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91