genome.fa.s201.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  31  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5378020--5378058	20	2.0	20	85	10	53	15	5	2	76	1.06
5377979--5378087	15	7.1	16	72	19	58	24	1	2	70	1.10
5378186--5378553	58	6.2	58	76	14	333	43	8	12	36	1.72
5383026--5383100	29	2.5	30	72	12	75	49	4	4	42	1.40
5383049--5383133	29	2.9	29	79	6	84	55	3	2	38	1.30
5384542--5384583	18	2.3	19	83	4	59	30	0	2	66	1.04
5385546--5385587	11	3.8	11	87	0	66	23	0	26	50	1.50
5385545--5385587	22	2.0	22	95	0	77	25	0	25	48	1.51
5385613--5385768	52	3.0	52	83	1	170	41	7	23	28	1.80
5386260--5386342	31	2.7	31	88	5	123	28	18	26	26	1.98
5386624--5386665	11	3.8	11	90	0	66	19	0	30	50	1.48
5386623--5386665	22	2.0	22	95	0	77	20	0	30	48	1.50
5386690--5386846	52	3.0	52	82	5	192	40	7	23	28	1.82
5389102--5389132	15	2.0	16	93	6	55	41	0	0	58	0.98
5390035--5390107	9	7.7	9	75	17	58	58	2	1	36	1.21
5390035--5390124	10	9.4	9	71	15	56	58	3	2	35	1.27
5390035--5390124	29	3.1	28	76	7	92	58	3	2	35	1.27
5390172--5390205	11	3.2	11	83	8	52	47	2	0	50	1.16
5390172--5390215	21	2.1	21	82	0	52	54	2	0	43	1.12
5390225--5390295	37	1.9	36	83	8	90	53	1	7	38	1.37
5390265--5390307	17	2.6	16	85	10	59	58	2	9	30	1.42
5390268--5390351	8	9.9	8	76	12	78	63	2	3	30	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5390290--5390377	27	3.3	26	79	7	97	65	2	1	30	1.12
5390275--5390367	27	3.5	24	76	16	69	66	1	3	29	1.14
5390302--5390381	19	4.4	18	76	12	65	70	2	0	27	1.01
5390268--5390409	54	2.6	55	78	12	127	65	2	2	29	1.18
5390276--5390421	9	16.6	8	68	17	51	65	1	2	30	1.15
5391105--5391149	18	2.5	19	75	17	51	68	0	2	28	1.01
5391337--5391376	18	2.3	18	86	4	55	37	0	0	62	0.95
5392217--5392265	22	2.3	22	96	3	91	40	14	0	44	1.45
5395284--5395315	13	2.4	14	94	5	57	84	0	9	6	0.78
5396205--5396332	65	2.0	65	98	0	247	34	8	3	53	1.50
5396462--5396509	25	1.9	25	87	8	71	29	0	2	68	1.01
5397882--5397915	12	2.7	12	90	9	50	82	0	0	17	0.67
5397878--5397933	19	3.1	19	85	10	73	76	0	3	19	0.93
5397882--5397934	21	2.4	21	84	15	63	75	0	3	20	0.96
5398773--5398825	26	2.0	27	92	3	90	64	15	1	18	1.38
5411636--5411678	14	3.1	14	86	6	52	53	6	0	39	1.28
5415570--5415647	6	13.2	6	72	2	59	28	0	10	61	1.28
5417375--5417418	20	2.1	21	87	4	63	36	6	6	50	1.56
5417392--5417455	33	1.9	34	87	3	94	34	3	6	56	1.40
5417390--5417465	33	2.4	30	79	12	82	34	3	7	53	1.48
5420275--5420312	13	3.1	13	88	7	53	42	0	0	57	0.98
5423142--5423251	25	4.5	25	67	20	63	69	1	10	18	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5423157--5423224	20	3.4	20	79	4	66	67	1	11	19	1.29
5423082--5423223	19	6.7	19	69	20	77	67	2	10	19	1.30
5427864--5427894	6	5.2	6	92	0	53	48	32	0	19	1.49
5429264--5429310	18	2.4	19	79	13	51	34	0	6	59	1.23
5430212--5430239	9	3.1	9	100	0	56	10	10	0	78	0.96
5431625--5431714	42	2.1	43	90	8	141	25	3	17	53	1.59
5432684--5432719	12	3.0	12	91	0	54	0	41	8	50	1.33
5434712--5434777	26	2.7	24	77	17	64	50	1	4	43	1.32
5438070--5438140	35	2.0	35	91	0	115	45	11	4	39	1.60
5441422--5441447	10	2.6	10	100	0	52	19	0	0	80	0.71
5441666--5441700	18	1.9	18	88	0	52	20	2	0	77	0.90
5441670--5441702	17	2.1	17	88	11	52	21	3	0	75	0.93
5442187--5442214	2	14.0	2	100	0	56	50	0	0	50	1.00
5443235--5443347	36	3.2	36	67	14	108	38	3	2	55	1.31
5444779--5444820	21	2.0	21	90	9	68	33	57	4	4	1.41
5445016--5445061	24	1.9	24	82	8	58	80	13	4	2	0.95
5444995--5445055	18	3.5	18	73	13	56	75	19	4	0	0.98
5445310--5445369	28	2.1	29	84	3	77	58	5	1	35	1.30
5452152--5452368	50	4.4	50	76	11	185	43	12	11	31	1.80
5452152--5452368	100	2.2	99	78	8	226	43	12	11	31	1.80
5461088--5461139	9	6.2	9	71	24	51	69	0	0	30	0.89
5461088--5461150	32	1.9	33	84	9	85	68	0	1	30	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5461088--5461135	17	2.9	16	82	11	62	70	0	0	29	0.87
5463682--5463713	13	2.6	12	90	9	55	43	0	6	50	1.27
5464677--5464739	29	2.2	28	88	2	90	44	0	0	55	0.99
5464671--5464733	20	3.1	20	75	22	60	46	0	0	53	1.00
5464700--5464741	20	2.1	20	86	0	57	50	0	0	50	1.00
5464819--5464878	28	2.1	28	81	6	68	48	3	3	45	1.35
5464860--5464908	19	2.5	20	81	15	59	48	4	0	46	1.20
5471014--5471054	17	2.5	17	84	7	59	43	0	0	56	0.99
5472426--5472487	29	2.2	28	82	11	81	46	3	0	50	1.17
5477474--5477543	28	2.5	28	88	0	104	52	7	40	0	1.29
5478021--5478089	27	2.4	31	83	11	101	39	5	1	53	1.34
5478518--5478578	20	3.2	19	79	9	70	50	8	0	40	1.32
5480256--5480298	10	4.3	10	81	0	50	62	0	27	9	1.25
5480256--5480303	15	3.2	15	75	0	51	64	2	25	8	1.32
5483846--5484038	7	29.3	7	85	10	214	43	0	1	55	1.09
5483846--5484038	20	9.8	20	79	10	211	43	0	1	55	1.09
5483846--5484038	27	7.3	26	80	10	191	43	0	1	55	1.09
5484506--5484536	16	1.9	16	93	0	53	29	6	6	58	1.48
5484864--5484905	14	2.9	14	76	16	50	45	0	0	54	0.99
5486176--5486212	17	2.1	18	90	5	58	35	5	0	59	1.20
5487440--5487487	17	2.7	17	80	6	51	56	0	4	39	1.19
5491412--5491436	6	4.2	6	100	0	50	16	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5491815--5491854	2	20.0	2	94	0	71	47	2	0	50	1.14
5492395--5492426	12	2.6	13	80	19	50	46	46	0	6	1.27
5493188--5493236	22	2.2	23	82	10	57	46	0	4	48	1.20
5493576--5493631	15	3.7	15	81	9	69	50	28	1	19	1.58
5493565--5493626	8	8.0	8	73	24	53	48	29	0	22	1.51
5493566--5493626	30	2.0	31	87	3	88	49	29	0	21	1.50
5498294--5498335	9	4.7	9	85	11	59	88	9	2	0	0.61
5498294--5498334	17	2.4	17	91	4	64	87	9	2	0	0.62
5500654--5500742	41	2.2	42	80	8	112	34	20	11	33	1.88
5500946--5501013	23	3.0	23	84	2	84	29	22	19	29	1.98
5500953--5501018	22	3.0	22	84	2	69	30	21	16	31	1.95
5501477--5501529	22	2.4	22	87	6	72	30	30	15	24	1.95
5502012--5502203	101	1.9	102	82	1	242	21	18	11	47	1.81
5502068--5502391	169	1.9	170	81	6	399	20	18	14	46	1.83
5502237--5502709	105	4.6	104	82	6	507	21	17	12	48	1.80
5503041--5503081	3	14.0	3	89	5	66	70	0	0	29	0.87
5503115--5503145	8	3.9	8	95	0	53	90	3	0	6	0.55
5503191--5503254	11	5.7	11	68	17	51	26	53	10	9	1.66
5504608--5504756	31	4.9	31	70	12	103	46	30	2	19	1.64
5504658--5504692	17	2.1	17	94	0	61	45	40	0	14	1.45
5504624--5504756	15	8.7	15	69	16	78	47	31	2	18	1.61
5507745--5507773	14	2.0	15	93	6	51	27	0	3	68	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5507809--5507877	30	2.3	30	80	5	77	63	1	7	27	1.29
5508828--5508856	3	9.7	3	100	0	58	68	0	0	31	0.89
5514992--5515142	73	2.1	72	86	6	207	32	14	15	37	1.88
5517917--5517950	17	2.0	17	88	11	52	44	0	2	52	1.16
5520382--5520428	18	2.7	17	87	6	51	34	14	23	27	1.94
5520391--5520428	18	2.1	18	95	0	67	36	15	21	26	1.93
5523914--5524012	6	16.2	6	84	4	90	18	3	10	68	1.31
5524016--5524059	22	2.1	20	84	16	54	68	2	11	18	1.30
5525697--5525747	20	2.5	20	83	3	66	21	29	23	25	1.99
5526817--5526869	17	3.1	17	75	2	52	13	3	13	69	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91