genome.fa.s201.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  56  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9313585--9313617	16	2.1	16	88	11	50	66	0	0	33	0.92
9314178--9314251	34	2.2	34	86	11	100	71	4	6	17	1.24
9315077--9315114	15	2.5	15	87	8	51	47	15	7	28	1.74
9315940--9315973	17	1.9	18	94	5	61	67	11	0	20	1.21
9316201--9316247	15	3.1	15	75	6	51	6	12	0	80	0.88
9316282--9316338	12	5.1	11	75	10	53	64	3	1	29	1.20
9316614--9316658	16	2.9	16	78	21	60	71	0	2	26	0.98
9320064--9320130	31	2.1	33	86	10	95	71	7	1	19	1.17
9320118--9320161	17	2.9	15	81	15	54	75	4	9	11	1.19
9320118--9320161	14	2.9	14	81	15	52	75	4	9	11	1.19
9323686--9323725	20	2.0	20	86	13	57	57	10	5	27	1.52
9324708--9324853	73	2.0	71	92	2	238	38	13	13	35	1.83
9329802--9329826	12	2.1	12	100	0	50	24	16	32	28	1.96
9331018--9331047	15	2.0	15	93	0	51	70	0	6	23	1.11
9333274--9333310	2	18.5	2	88	0	56	51	5	0	43	1.24
9336759--9336797	2	19.5	2	100	0	78	51	0	48	0	1.00
9337800--9337839	19	2.1	19	85	0	53	62	0	2	35	1.09
9338225--9338305	27	3.0	27	90	0	126	54	2	0	43	1.13
9338485--9338639	63	2.5	63	82	0	202	47	5	5	41	1.48
9339183--9339208	6	4.3	6	100	0	52	50	0	0	50	1.00
9339267--9339307	17	2.6	16	85	14	59	48	4	0	46	1.23
9339666--9339743	12	6.6	11	70	15	50	25	3	14	56	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9340906--9340952	13	3.5	13	75	16	51	31	0	0	68	0.90
9342890--9342954	24	2.8	24	74	4	71	41	7	9	41	1.65
9342890--9342998	46	2.4	46	83	6	123	41	9	11	38	1.72
9343691--9343730	19	2.1	19	85	0	53	32	12	15	40	1.84
9345297--9345353	30	1.9	28	83	16	71	28	1	5	64	1.25
9345411--9345698	146	2.0	147	92	1	481	38	7	10	43	1.67
9346470--9346513	18	2.4	18	88	7	63	68	4	0	27	1.09
9346485--9346594	37	3.2	33	75	21	93	73	3	2	20	1.11
9346530--9346600	23	3.2	21	82	8	70	78	1	4	15	0.97
9346542--9346595	13	4.2	13	78	17	51	81	0	3	14	0.82
9346543--9346594	21	2.3	22	87	9	70	80	0	3	15	0.85
9346532--9346589	27	2.1	28	84	9	75	77	1	1	18	0.94
9346539--9346600	21	3.1	20	77	11	65	80	0	4	14	0.87
9346677--9346727	15	3.5	14	77	17	50	76	0	1	21	0.88
9346677--9346732	23	2.6	21	78	15	60	76	0	1	21	0.87
9347451--9347489	19	2.1	19	85	9	53	7	12	5	74	1.20
9348086--9348119	17	2.0	17	94	0	59	70	2	0	26	1.01
9348520--9348576	22	2.9	19	80	19	64	49	0	0	50	1.00
9348535--9348586	23	2.3	24	78	12	58	51	0	0	48	1.00
9349400--9349493	50	1.9	50	87	6	140	52	3	14	29	1.58
9350162--9350198	2	19.5	2	86	10	51	45	0	2	51	1.15
9350734--9350784	20	2.4	22	81	15	63	74	1	9	13	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9351852--9351884	17	1.9	17	88	11	50	84	3	3	9	0.82
9351860--9351893	11	3.0	11	91	4	50	85	2	2	8	0.80
9352346--9352384	18	2.2	18	86	9	53	79	2	7	10	1.02
9359645--9359675	2	15.5	2	100	0	62	48	0	0	51	1.00
9365321--9365360	14	2.7	14	85	11	53	10	25	2	62	1.39
9371363--9371425	2	32.0	2	79	3	65	39	6	1	52	1.37
9382887--9382938	23	2.2	24	86	6	72	76	1	11	9	1.09
9383756--9383875	64	1.9	64	87	0	177	35	8	8	47	1.64
9385545--9385599	3	18.3	3	100	0	110	67	0	0	32	0.91
9400868--9401028	87	1.8	89	85	7	231	47	3	2	46	1.33
9401085--9401154	29	2.4	30	85	2	88	47	1	1	50	1.19
9401385--9401423	20	2.0	20	89	0	60	56	0	2	41	1.13
9401332--9401517	46	4.1	46	71	20	142	50	0	2	47	1.17
9401469--9401542	19	3.9	19	70	19	57	44	0	2	52	1.15
9401466--9401540	34	2.1	36	80	11	84	44	0	2	53	1.14
9401530--9401579	27	1.9	27	88	8	77	46	2	0	52	1.12
9403900--9404156	136	1.9	136	92	0	435	27	13	9	49	1.72
9404901--9404933	16	2.0	17	88	5	50	81	0	6	12	0.85
9416223--9416252	2	15.0	2	100	0	60	50	0	0	50	1.00
9424645--9424701	18	3.4	17	78	14	55	26	1	1	70	1.07
9424637--9424714	19	4.3	18	75	14	70	25	3	1	69	1.13
9425308--9425368	5	11.4	5	78	18	61	16	6	0	77	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9425310--9425368	21	2.7	22	82	14	70	16	6	0	76	1.00
9425308--9425368	16	3.8	17	77	16	67	16	6	0	77	0.98
9425395--9425846	59	7.7	58	82	5	525	43	6	12	37	1.70
9427334--9427376	12	3.6	12	81	12	61	32	0	4	62	1.15
9427632--9427673	21	2.0	20	86	4	57	9	2	4	83	0.88
9429221--9429299	25	3.2	24	83	3	86	7	20	0	72	1.09
9430807--9430858	17	3.0	17	78	15	61	21	0	9	69	1.17
9431000--9431038	18	2.2	18	85	0	51	23	2	7	66	1.30
9431587--9431627	21	2.0	21	90	0	64	17	12	0	70	1.16
9432094--9432145	16	3.2	16	81	5	68	59	5	5	28	1.44
9434493--9434549	19	2.8	19	75	14	51	8	14	3	73	1.20
9434520--9434556	19	1.9	19	88	0	56	8	10	2	78	1.06
9435113--9435167	20	2.5	22	80	14	60	10	9	1	78	1.05
9436004--9436044	20	2.2	19	86	8	57	51	2	0	46	1.14
9441488--9441531	21	2.0	22	83	12	56	61	0	13	25	1.32
9441542--9441596	17	3.2	16	85	10	65	58	7	7	27	1.52
9441894--9442026	33	4.1	32	77	4	131	41	9	20	28	1.84
9441954--9442252	33	9.0	33	70	6	165	41	10	20	27	1.85
9442635--9442953	55	5.6	56	73	12	181	31	11	8	48	1.70
9442629--9442880	55	4.4	59	80	5	197	30	12	8	48	1.70
9443572--9443636	15	4.0	15	72	16	58	73	3	9	13	1.19
9443583--9443643	21	2.8	22	75	7	63	73	1	8	16	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9444500--9444536	17	2.1	18	95	5	67	51	2	5	40	1.39
9444705--9444730	2	13.0	2	100	0	52	50	0	0	50	1.00
9448048--9448084	16	2.3	17	81	13	51	51	0	2	45	1.15
9448122--9448163	21	2.1	19	86	8	57	54	0	0	45	0.99
9451837--9452085	58	4.3	57	85	5	308	38	14	6	41	1.71
9451837--9452082	115	2.1	115	86	8	331	37	13	6	41	1.71
9452058--9452104	19	2.5	19	96	0	85	42	12	10	34	1.78
9452156--9452212	23	2.5	24	82	8	73	80	0	3	15	0.84
9452156--9452218	6	10.8	6	83	13	62	79	0	4	15	0.90
9452177--9452209	8	4.2	8	84	7	50	87	0	0	12	0.53
9452151--9452218	35	1.9	35	85	5	93	79	0	5	14	0.91
9452156--9452218	12	5.5	11	79	9	72	79	0	4	15	0.90
9452244--9452284	3	13.7	3	94	0	73	65	0	2	31	1.05
9453114--9453190	22	3.4	23	78	7	68	61	2	5	31	1.32
9453418--9453662	41	6.0	41	83	4	248	37	19	15	26	1.92
9453418--9453665	83	3.0	82	82	8	276	37	20	15	26	1.92
9453418--9453660	124	2.0	122	81	10	289	38	19	15	26	1.92
9454676--9454728	23	2.2	24	87	9	74	7	11	0	81	0.88
9454670--9454740	37	2.0	36	86	5	99	9	14	0	76	1.03
9454701--9454733	8	4.4	8	85	14	52	12	9	0	78	0.95
9454670--9454745	12	6.2	12	76	13	66	10	13	0	76	1.02
9454681--9454749	19	3.7	19	81	18	81	11	11	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9454702--9454733	14	2.2	15	94	5	57	12	9	0	78	0.97
9465213--9465390	58	3.1	57	78	11	184	34	8	8	48	1.64
9465393--9465455	6	10.2	6	83	10	74	77	0	3	19	0.90
9465386--9465447	19	3.3	19	81	6	81	77	1	1	19	0.94
9465401--9465455	19	3.1	16	76	23	56	78	0	3	18	0.90
9465399--9465455	25	2.3	25	85	8	82	77	0	3	19	0.92
9466271--9466360	37	2.3	42	79	11	102	62	2	6	28	1.33
9466333--9466391	22	2.7	23	84	7	77	57	1	6	33	1.35
9466376--9466435	9	6.7	9	73	7	59	71	3	0	25	1.01
9467701--9467879	59	3.1	56	77	11	173	35	7	7	49	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91