genome.fa.s201.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  81  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13631869--13631906	19	2.0	19	89	0	58	34	13	18	34	1.89
13631989--13632027	19	2.0	20	95	5	71	41	20	15	23	1.90
13632446--13632502	11	5.4	11	81	10	57	14	5	1	78	0.99
13632446--13632540	5	18.4	5	74	20	72	14	5	2	77	1.03
13632445--13632532	6	14.7	6	68	17	58	14	5	1	78	0.99
13632451--13632538	28	2.9	30	83	13	108	14	5	2	77	1.05
13632567--13632724	58	2.7	59	88	4	230	43	6	14	34	1.72
13635981--13636035	10	5.4	10	74	18	51	56	0	1	41	1.10
13636459--13636500	21	2.0	22	90	4	68	42	7	0	50	1.30
13639668--13639721	18	2.9	18	81	8	63	66	1	1	29	1.12
13640048--13640342	29	10.3	29	76	11	238	48	30	1	19	1.59
13640145--13640195	22	2.3	22	83	13	68	49	33	0	17	1.47
13640076--13640342	86	3.1	86	81	6	276	47	29	1	20	1.61
13640302--13640399	28	3.5	28	76	9	74	50	31	1	17	1.53
13640281--13640370	14	6.4	14	71	10	67	51	31	0	17	1.46
13643777--13643824	18	2.8	17	84	15	71	33	10	0	56	1.34
13644606--13644640	17	2.1	17	89	10	54	11	22	0	65	1.24
13644588--13644709	60	2.0	60	88	0	181	18	21	6	54	1.66
13653119--13653170	15	3.5	15	70	19	54	32	30	11	25	1.91
13653108--13653170	30	2.1	30	100	0	126	33	30	12	23	1.92
13657528--13657578	21	2.4	21	81	12	52	52	0	1	45	1.12
13658180--13658229	8	6.4	8	86	2	66	64	2	0	34	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13658184--13658232	24	2.0	24	92	0	80	61	2	0	36	1.08
13659732--13659820	21	4.8	18	77	12	92	55	2	0	42	1.12
13659774--13659831	16	3.3	18	77	20	68	56	3	0	39	1.16
13659732--13659830	18	5.6	17	77	20	64	55	2	0	42	1.11
13659885--13659943	15	3.7	15	76	13	55	44	0	0	55	0.99
13659881--13659953	34	2.2	34	83	11	89	47	0	0	52	1.00
13659931--13659994	26	2.5	26	90	5	96	50	1	0	48	1.10
13659929--13659994	9	7.7	9	70	21	52	48	1	0	50	1.10
13660117--13660147	14	2.2	14	100	0	62	45	6	0	48	1.28
13665012--13665817	59	13.6	57	84	8	949	33	13	8	44	1.73
13665861--13665890	9	3.2	9	90	9	51	80	0	0	20	0.72
13665861--13665891	10	3.2	10	95	4	55	80	0	0	19	0.71
13666074--13666099	5	5.2	5	100	0	52	0	38	42	19	1.51
13666511--13666564	25	2.2	24	83	6	63	40	18	5	35	1.74
13666931--13666964	17	1.9	18	88	5	52	79	2	2	14	0.97
13666989--13667093	16	6.6	16	69	20	60	64	7	0	27	1.20
13666964--13667084	35	3.4	34	73	18	97	61	6	0	30	1.27
13667295--13667338	23	1.9	23	95	0	79	0	4	11	84	0.77
13667275--13667338	8	7.9	8	83	10	76	0	3	12	84	0.74
13667285--13667347	33	1.9	33	87	9	94	1	3	9	85	0.77
13667354--13667498	41	3.5	41	91	3	227	34	24	18	22	1.96
13670511--13670856	129	2.7	128	80	4	367	41	6	8	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13671673--13671850	51	3.4	54	74	15	176	41	2	15	40	1.61
13671673--13671822	55	2.8	55	75	17	154	41	3	15	40	1.63
13671673--13671869	101	1.9	105	82	6	251	41	3	15	39	1.63
13695762--13695790	10	2.7	11	89	10	51	37	13	0	48	1.43
13696008--13696068	23	2.5	25	81	7	72	39	1	6	52	1.37
13704386--13704432	16	3.2	16	75	25	59	10	10	4	74	1.20
13704386--13704445	28	2.1	28	85	11	79	8	15	3	73	1.20
13706149--13706194	17	2.6	17	93	3	74	21	0	4	73	1.00
13706937--13706994	23	2.5	23	100	0	116	51	5	12	31	1.61
13715114--13715139	2	13.0	2	100	0	52	50	0	0	50	1.00
13716280--13716311	2	16.0	2	93	0	55	46	3	0	50	1.17
13723751--13723811	25	2.4	25	78	8	70	55	3	0	40	1.16
13723941--13724091	52	2.9	50	76	11	128	41	13	0	43	1.49
13723940--13724119	55	3.4	54	73	16	144	42	14	1	42	1.53
13724135--13724265	58	2.2	61	82	11	166	43	16	2	37	1.61
13724640--13724967	129	2.5	126	80	6	347	43	10	6	39	1.63
13726566--13726640	39	1.9	39	84	10	100	44	14	8	33	1.75
13726813--13726859	24	2.0	24	83	8	60	40	0	0	59	0.97
13735322--13735346	2	12.5	2	100	0	50	48	0	0	52	1.00
13735394--13735424	7	4.3	7	92	8	53	83	0	0	16	0.64
13735394--13735424	15	2.1	14	94	5	53	83	0	0	16	0.64
13735338--13735506	89	1.9	88	87	4	252	44	9	4	40	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13738131--13738185	28	1.9	29	88	3	85	49	0	1	49	1.11
13740855--13740906	22	2.5	21	78	9	61	25	7	19	48	1.75
13743049--13743075	1	27.0	1	100	0	54	0	0	0	100	0.00
13747526--13747557	2	16.0	2	93	0	55	50	3	0	46	1.17
13751908--13751933	2	13.0	2	100	0	52	50	0	0	50	1.00
13754918--13754955	15	2.5	15	95	0	67	50	0	7	42	1.31
13758262--13758311	23	2.2	23	96	0	91	38	12	20	30	1.88
13758651--13758693	22	2.0	22	100	0	86	41	25	4	27	1.75
13762970--13763045	11	6.2	12	69	19	50	44	1	2	51	1.23
13770838--13770898	25	2.4	25	78	8	70	55	3	0	40	1.16
13771027--13771207	52	3.4	53	74	13	149	41	14	1	41	1.56
13771255--13771319	25	2.7	23	77	13	60	41	15	3	40	1.63
13771728--13772006	129	2.2	129	83	3	339	43	10	6	39	1.65
13773660--13773734	39	1.9	39	81	10	91	44	16	8	32	1.76
13779345--13779412	15	4.6	15	77	12	61	33	2	1	61	1.20
13779344--13779414	30	2.4	28	72	19	72	35	2	2	59	1.27
13779561--13779591	15	2.1	15	93	0	53	19	3	0	77	0.90
13782444--13782468	12	2.1	12	100	0	50	16	0	8	76	1.02
13785892--13785923	7	4.6	7	96	0	55	90	0	9	0	0.45
13785890--13785925	19	1.9	18	88	5	54	88	0	11	0	0.50
13786339--13786380	21	2.0	21	85	0	57	78	0	19	2	0.86
13786339--13786375	11	3.5	11	85	7	58	81	0	18	0	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13786310--13786385	38	2.0	38	86	0	107	77	0	17	5	0.94
13786311--13786383	27	2.5	28	82	13	85	78	0	16	5	0.94
13786311--13786383	30	2.5	30	79	18	82	78	0	16	5	0.94
13787570--13788158	42	14.1	41	87	7	805	24	18	22	34	1.96
13788164--13788217	19	2.9	18	83	8	72	85	11	0	3	0.73
13788167--13788228	18	3.3	20	80	14	80	85	11	0	3	0.71
13788191--13788228	11	3.5	11	82	3	51	86	10	0	2	0.66
13788316--13788354	15	2.7	15	92	4	62	87	0	10	2	0.65
13788507--13788537	15	2.1	15	93	0	53	19	3	0	77	0.90
13791391--13791415	12	2.1	12	100	0	50	16	0	8	76	1.02
13792355--13792392	11	3.5	11	79	13	51	50	0	5	44	1.24
13795985--13796057	24	3.0	24	69	18	60	50	0	2	46	1.15
13797697--13798722	513	2.0	513	98	0	1971	33	14	15	36	1.88
13808726--13808751	2	13.0	2	100	0	52	50	0	0	50	1.00
13808924--13809053	4	30.8	4	71	17	77	30	1	3	64	1.18
13808925--13809053	41	2.9	44	77	13	120	31	1	3	64	1.18
13809044--13809074	16	1.9	16	93	0	53	16	6	6	70	1.29
13809874--13809911	18	2.1	18	90	0	58	18	36	31	13	1.89
13810028--13810101	6	12.7	6	72	13	57	13	5	1	79	0.96
13810028--13810101	23	3.2	23	78	5	69	13	5	1	79	0.96
13810029--13810106	11	6.8	11	73	13	59	12	5	2	79	1.00
13810023--13810084	24	2.5	24	84	10	81	12	4	0	82	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13810036--13810118	29	2.9	28	80	7	85	14	4	2	78	1.02
13810136--13810748	58	10.7	55	87	8	831	45	7	12	34	1.71
13810772--13810804	6	5.7	6	96	3	59	15	0	12	72	1.12
13814624--13814711	25	3.0	30	72	24	80	70	0	19	10	1.15
13814635--13814690	25	2.2	26	90	6	87	76	0	16	7	0.99
13815948--13816165	43	5.1	42	85	5	262	23	16	22	36	1.94
13816172--13816232	1	61.0	1	75	0	50	86	9	1	1	0.70
13816174--13816232	6	9.8	6	83	7	66	86	10	1	1	0.72
13816441--13816543	4	24.5	4	70	16	66	29	1	2	66	1.17
13816469--13816540	21	3.3	21	72	16	65	29	1	2	66	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91