genome.fa.s201.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  50  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8215790--8215910	27	4.3	28	79	11	124	62	1	4	30	1.26
8215796--8215910	53	2.1	54	80	7	135	62	1	4	31	1.25
8215918--8215951	15	2.3	15	94	0	59	73	2	0	23	0.97
8221173--8221217	21	2.1	22	84	8	58	73	0	24	2	0.95
8226663--8226706	20	2.2	20	87	4	61	54	0	0	45	0.99
8239413--8239495	41	2.0	41	90	0	130	28	14	16	39	1.88
8242063--8242106	20	2.2	20	92	4	72	15	13	13	56	1.67
8244127--8244192	27	2.5	27	79	20	77	51	3	0	45	1.16
8244144--8244217	27	2.8	28	80	10	75	48	4	1	45	1.29
8248647--8248715	30	2.3	29	78	11	77	42	4	2	50	1.37
8248848--8248876	2	14.5	2	100	0	58	48	0	0	51	1.00
8250070--8250096	12	2.2	12	100	0	54	48	25	7	18	1.74
8255717--8256097	189	2.0	187	96	1	699	38	15	12	33	1.84
8261585--8261627	21	2.0	21	83	16	54	58	0	2	39	1.11
8262841--8263029	90	2.1	90	93	0	324	26	27	24	21	1.99
8284427--8284451	4	6.2	4	100	0	50	0	28	0	72	0.86
8296119--8296258	66	2.1	67	76	11	146	41	2	0	55	1.20
8297054--8297095	20	2.0	21	86	4	59	35	2	2	59	1.23
8300972--8301004	3	11.0	3	100	0	66	66	0	0	33	0.92
8303976--8304005	2	15.0	2	100	0	60	0	50	0	50	1.00
8310936--8311028	30	3.2	30	85	5	122	24	3	19	52	1.60
8311976--8312010	16	2.2	16	89	0	52	51	2	11	34	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8313335--8313373	20	2.0	20	89	0	60	28	7	15	48	1.72
8317646--8317670	2	12.5	2	100	0	50	52	0	0	48	1.00
8318218--8318249	3	10.7	3	93	0	55	68	3	0	28	1.04
8323819--8323848	9	3.4	9	90	9	53	40	13	0	46	1.43
8324291--8324348	27	2.2	26	87	3	80	36	10	0	53	1.35
8326588--8326624	18	2.1	18	90	10	58	29	10	0	59	1.31
8327549--8327601	24	2.2	24	83	6	63	7	22	1	67	1.25
8327599--8327664	4	15.8	4	76	14	62	25	4	0	69	1.07
8328006--8328057	26	2.0	26	88	3	77	42	0	7	50	1.31
8328561--8328595	17	2.1	17	88	0	52	17	0	5	77	0.96
8330342--8330429	3	29.3	3	97	0	113	67	7	0	25	1.18
8330858--8330901	10	4.4	10	83	11	63	77	0	0	22	0.77
8330855--8330901	16	3.1	16	77	17	55	76	0	0	23	0.78
8331165--8331211	3	15.7	3	100	0	94	68	0	0	31	0.90
8330410--8331975	781	2.0	784	86	5	2182	46	8	10	34	1.69
8331474--8331498	12	2.1	12	100	0	50	36	24	8	32	1.84
8331629--8331670	12	3.7	12	81	12	52	73	0	2	23	0.94
8331624--8331694	22	3.0	23	80	14	65	71	2	1	23	1.07
8331637--8331681	15	3.3	14	81	15	58	73	2	0	24	0.95
8331637--8331719	25	3.3	24	81	11	78	72	1	2	24	1.04
8330410--8332395	765	2.6	748	82	7	2317	44	9	10	35	1.71
8336185--8336639	234	1.9	235	88	2	682	43	16	15	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8339871--8339902	16	2.0	16	100	0	64	25	31	6	37	1.81
8351493--8351589	36	2.7	36	90	0	158	29	6	19	44	1.75
8357107--8357175	22	3.0	23	70	22	56	63	17	7	11	1.49
8357524--8357573	13	4.1	12	80	12	57	2	12	2	84	0.80
8357516--8357567	25	2.2	25	82	6	63	1	15	1	80	0.88
8357524--8357573	25	2.0	25	88	3	75	2	12	2	84	0.80
8357898--8357935	11	3.2	12	85	11	51	13	7	0	78	0.94
8358329--8358357	14	2.0	15	93	6	51	48	13	6	31	1.69
8358742--8358770	13	2.1	14	93	6	51	41	6	13	37	1.72
8360269--8360459	102	1.9	101	81	3	231	36	6	12	45	1.67
8360553--8360605	21	2.5	21	81	0	70	47	13	7	32	1.70
8363679--8363711	15	2.1	16	88	5	50	15	18	3	63	1.43
8370633--8370666	17	2.0	17	100	0	68	29	17	29	23	1.97
8373075--8373135	19	3.3	19	81	4	72	26	3	1	68	1.14
8374527--8374560	17	1.9	17	88	5	50	14	5	2	76	1.09
8374546--8374583	18	2.0	18	90	10	58	28	0	5	65	1.14
8374595--8374628	15	2.3	15	89	0	50	44	2	0	52	1.16
8374828--8375068	90	2.6	90	78	5	243	42	20	11	26	1.85
8375034--8375679	51	13.2	51	75	12	445	41	19	10	28	1.85
8374855--8375679	45	17.2	50	75	13	489	41	19	11	27	1.85
8374855--8375575	152	4.9	148	78	9	621	41	19	11	27	1.86
8375084--8375541	248	1.9	247	83	6	597	40	19	11	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8375479--8375512	16	2.1	16	89	10	52	38	23	14	23	1.92
8388534--8388584	25	2.0	25	88	0	75	11	9	9	68	1.39
8389041--8389078	18	2.0	18	90	10	58	28	0	5	65	1.14
8389091--8389124	15	2.3	15	89	0	50	44	2	0	52	1.16
8389473--8389537	33	2.0	33	84	6	87	30	15	18	35	1.92
8389693--8389806	33	3.5	33	75	9	106	28	11	20	40	1.87
8389707--8389837	66	2.0	66	84	3	174	27	12	19	40	1.88
8389726--8389866	66	2.1	66	81	2	158	29	11	19	40	1.86
8389825--8389887	33	1.9	33	86	0	90	31	14	20	33	1.92
8389958--8390058	41	2.5	40	83	8	114	41	7	8	41	1.65
8391416--8391459	21	2.0	22	86	4	63	22	6	18	52	1.69
8391811--8391890	32	2.6	31	80	11	85	20	8	1	70	1.21
8392449--8392499	20	2.4	21	78	18	52	72	1	3	21	1.11
8392759--8392787	3	9.7	3	100	0	58	68	0	0	31	0.89
8395022--8395079	21	2.8	21	94	0	98	24	1	1	72	1.03
8395025--8395089	17	3.5	17	78	18	51	26	1	1	70	1.04
8395638--8395699	23	2.7	23	80	7	65	72	3	3	20	1.13
8395671--8395708	18	2.2	17	90	4	58	76	2	0	21	0.91
8395676--8395716	18	2.3	18	87	4	57	75	2	2	19	1.03
8395768--8395814	16	2.9	16	80	3	58	46	6	2	44	1.40
8396034--8396115	3	27.7	3	97	2	157	67	0	0	32	0.91
8399113--8399194	30	2.7	30	83	7	85	40	1	8	50	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8400765--8400820	27	2.1	27	86	0	76	42	12	3	41	1.60
8400979--8401022	2	23.0	2	81	9	56	47	2	0	50	1.13
8401657--8401706	24	2.1	25	81	7	59	58	4	0	38	1.17
8403066--8403115	21	2.5	20	80	3	55	56	4	6	34	1.43
8409969--8410023	27	2.0	27	100	0	110	25	18	21	34	1.96
8423884--8423913	12	2.5	12	100	0	60	20	0	23	56	1.42
8424230--8424259	12	2.5	12	94	0	51	60	10	0	30	1.30
8425415--8425460	20	2.3	20	85	7	58	50	10	10	28	1.71
8425426--8425471	20	2.3	20	88	0	65	47	6	8	36	1.60
8427012--8427067	19	2.9	19	86	0	67	39	35	3	21	1.71
8428773--8428803	6	5.0	6	92	7	53	83	16	0	0	0.64
8432320--8432349	14	2.1	14	93	0	51	90	0	6	3	0.56
8433054--8433833	202	3.9	203	79	7	782	40	12	12	33	1.81
8434183--8434933	236	3.2	235	80	7	800	45	10	9	33	1.72
8434690--8435220	287	1.9	280	90	4	859	44	11	10	32	1.75
8435620--8435685	20	3.2	20	85	8	71	78	0	15	6	0.93
8435637--8435678	11	3.9	11	82	14	52	83	0	11	4	0.79
8435640--8435679	12	3.5	11	86	6	53	85	0	10	5	0.75
8435640--8435685	22	2.1	22	88	4	67	82	0	10	6	0.83
8435634--8435690	10	5.6	10	78	17	55	80	0	12	7	0.89
8436154--8436249	14	5.8	15	71	23	52	73	0	20	5	1.02
8436172--8436223	20	2.7	20	76	8	54	73	0	21	5	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8436193--8436240	13	3.3	16	72	27	61	66	0	25	8	1.19
8436182--8436247	27	2.5	26	86	13	91	69	0	22	7	1.13
8438176--8438362	40	4.6	41	75	12	161	27	18	14	38	1.91
8438176--8438360	82	2.2	82	80	6	196	28	18	14	38	1.90
8438422--8438478	30	1.9	30	85	0	78	33	21	17	28	1.96
8438484--8438531	21	2.3	21	85	0	60	20	25	18	35	1.95
8441080--8441139	19	3.2	18	81	9	66	41	35	0	23	1.55
8441951--8442000	20	2.5	20	100	0	100	28	12	14	46	1.79
8441750--8444172	610	4.0	604	87	3	3289	30	14	13	41	1.84
8445829--8445888	20	3.0	19	77	13	66	51	13	3	31	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91