genome.fa.s201.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168026.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_28, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15507587

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   

This is table  27  of  91  ( 10856 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4706766--4706815	21	2.4	21	96	0	91	44	8	0	48	1.32
4706766--4706814	11	4.8	10	80	9	55	44	8	0	46	1.33
4710993--4711103	32	3.7	31	77	13	99	44	4	0	51	1.22
4711962--4711991	15	2.0	15	93	0	51	30	6	20	43	1.77
4713783--4714040	64	4.1	63	77	6	243	39	11	15	33	1.82
4713806--4714041	63	3.7	63	78	6	253	39	10	16	33	1.82
4716724--4716803	42	1.9	42	84	5	108	35	18	11	35	1.87
4716785--4716827	12	3.5	12	83	3	50	41	30	4	23	1.74
4718489--4718522	15	2.3	15	94	0	59	82	0	2	14	0.79
4719177--4719201	13	1.9	13	100	0	50	88	0	0	12	0.53
4719568--4719812	57	4.6	52	77	10	224	49	10	13	25	1.74
4719568--4719812	108	2.3	108	88	5	363	49	10	13	25	1.74
4720381--4720410	15	2.0	15	93	0	51	13	3	3	80	0.97
4722783--4722818	14	2.4	16	90	9	58	8	19	8	63	1.47
4723209--4723262	13	4.0	13	74	9	54	79	3	11	5	1.02
4723606--4723656	18	2.9	17	83	13	59	78	0	13	7	0.96
4724944--4725269	21	14.8	22	76	10	238	38	9	13	38	1.78
4724950--4725165	46	4.8	45	82	6	267	39	10	14	35	1.81
4724970--4725054	13	7.1	13	65	25	53	42	11	12	32	1.80
4724946--4725265	89	3.6	90	83	5	325	38	9	13	38	1.78
4725727--4725935	41	5.0	42	82	4	192	22	12	17	47	1.81
4725860--4725944	40	2.2	40	82	2	100	27	10	16	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4725859--4726037	43	4.2	43	79	9	161	25	14	15	44	1.85
4725839--4726038	44	4.7	44	80	6	175	25	15	16	43	1.86
4726611--4726660	22	2.3	22	96	0	91	16	6	2	76	1.08
4727293--4727506	56	3.9	54	74	12	195	50	10	13	25	1.73
4727288--4727532	111	2.2	109	85	4	323	50	10	11	27	1.71
4728665--4728714	24	2.1	24	100	0	100	30	16	8	46	1.75
4733475--4733501	14	1.9	14	100	0	54	37	0	11	51	1.37
4735015--4735156	55	2.6	53	82	7	158	51	16	8	23	1.72
4736213--4736283	37	2.0	35	81	15	83	23	5	4	66	1.31
4736379--4736418	20	2.0	20	90	0	62	35	5	5	55	1.44
4738280--4738312	12	2.8	12	90	0	57	78	0	9	12	0.95
4739257--4739284	2	14.0	2	100	0	56	50	0	50	0	1.00
4739582--4739629	23	2.1	23	92	7	80	25	18	14	41	1.88
4743060--4743309	129	2.0	128	87	5	348	48	1	4	45	1.31
4753472--4753511	2	20.0	2	94	0	71	47	0	0	52	1.00
4754148--4754178	14	2.1	15	94	5	55	45	0	0	54	0.99
4754149--4754187	20	1.9	21	89	5	62	41	0	0	58	0.98
4754224--4754261	18	2.1	19	90	5	60	23	0	7	68	1.16
4754721--4755409	251	2.9	238	84	8	834	40	11	4	43	1.63
4755582--4755690	43	2.5	43	98	0	209	35	19	9	35	1.83
4757159--4757196	19	2.0	19	90	10	60	47	15	13	23	1.81
4757029--4758066	346	3.0	346	95	0	1898	33	18	11	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4757851--4757887	19	1.9	19	88	0	56	45	13	16	24	1.83
4765696--4765743	24	2.0	24	92	8	80	37	8	10	43	1.69
4768069--4768104	17	2.1	18	89	5	56	58	11	0	30	1.33
4784733--4784762	10	3.0	10	100	0	60	40	50	10	0	1.36
4790365--4790412	22	2.2	23	85	7	64	56	18	6	18	1.62
4790933--4790976	21	2.0	21	82	4	52	47	4	4	43	1.44
4792539--4792572	16	2.1	16	88	0	50	44	17	2	35	1.64
4792804--4792853	11	4.6	11	82	2	66	14	6	0	80	0.90
4792796--4792853	16	3.7	15	80	15	64	15	5	0	79	0.90
4795780--4795861	30	2.7	30	83	7	103	53	2	2	41	1.27
4797896--4797930	16	2.2	16	89	0	52	25	2	11	60	1.45
4800391--4800435	21	2.1	21	87	4	63	55	0	20	24	1.43
4803643--4803667	5	5.0	5	100	0	50	20	0	0	80	0.72
4804198--4804254	28	2.1	27	81	9	64	21	1	3	73	1.07
4804224--4804256	13	2.5	13	95	0	57	24	0	3	72	0.98
4804551--4804628	39	2.1	36	80	9	84	37	10	11	41	1.75
4805768--4805792	1	25.0	1	100	0	50	0	0	0	100	0.00
4805841--4805870	13	2.3	13	94	0	51	60	6	3	30	1.39
4810519--4810565	3	15.7	3	95	0	85	29	0	2	68	1.02
4812394--4812464	32	2.1	34	89	5	110	15	1	15	67	1.30
4812548--4812778	126	1.8	128	83	9	312	38	1	7	51	1.41
4819498--4819573	36	2.1	36	92	4	127	47	10	3	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4825189--4825218	16	1.9	16	93	6	53	0	26	0	73	0.84
4825529--4825568	20	1.9	22	90	10	66	60	5	5	30	1.40
4826836--4826877	21	2.0	20	86	9	57	57	16	4	21	1.58
4828349--4828398	22	2.3	22	79	6	57	56	0	0	44	0.99
4829116--4829140	13	1.9	13	100	0	50	40	0	12	48	1.40
4831707--4831751	21	2.1	22	83	4	56	42	6	6	44	1.57
4838404--4838439	13	2.8	14	84	16	51	13	0	11	75	1.06
4844651--4844686	18	2.0	18	100	0	72	33	5	11	50	1.61
4847906--4847993	22	4.0	21	76	17	79	62	0	0	37	0.95
4847906--4847952	19	2.3	21	86	13	64	65	0	0	34	0.93
4853461--4853585	18	6.9	19	73	23	78	55	3	0	40	1.22
4853468--4853587	22	5.3	22	72	19	95	56	2	0	40	1.18
4853519--4853581	13	5.0	13	75	12	69	55	1	1	41	1.19
4853522--4853587	20	3.4	20	76	16	84	57	1	1	39	1.17
4853487--4853596	49	2.3	47	83	14	129	57	1	1	39	1.20
4853605--4853693	18	5.1	18	71	17	71	47	1	0	51	1.08
4853662--4853702	16	2.7	15	85	7	55	48	2	0	48	1.14
4855663--4855723	31	2.0	31	90	0	95	24	22	16	36	1.94
4855962--4855999	21	1.9	21	89	10	62	42	2	10	44	1.52
4858037--4858205	43	4.0	43	79	11	190	26	17	13	42	1.87
4858039--4858205	82	2.0	82	87	4	239	25	17	13	42	1.87
4864503--4864548	3	15.3	3	100	0	92	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4864547--4864589	3	14.3	3	100	0	86	32	0	0	67	0.91
4872224--4872272	20	2.5	20	90	9	75	12	26	38	22	1.89
4873095--4873131	16	2.3	16	90	0	56	10	0	13	75	1.04
4873386--4873700	47	6.5	47	80	6	290	40	18	12	28	1.87
4873430--4873698	144	1.9	146	83	4	357	39	19	11	28	1.87
4874424--4874465	21	2.0	22	86	13	61	4	16	0	78	0.91
4874420--4874465	8	6.3	7	83	16	58	4	15	0	80	0.86
4880279--4880788	252	2.0	252	98	0	993	31	18	13	36	1.90
4885506--4885542	12	2.9	13	80	19	51	37	0	0	62	0.96
4886636--4886672	16	2.3	16	90	0	56	18	2	2	75	1.04
4887295--4887320	13	2.0	13	100	0	52	7	0	7	84	0.77
4891235--4891295	25	2.4	25	81	8	70	27	1	11	59	1.42
4892136--4892188	25	2.1	26	96	3	99	35	0	0	64	0.94
4894333--4894362	2	15.0	2	92	0	51	46	0	3	50	1.18
4904443--4904474	16	1.9	17	93	6	57	40	3	0	56	1.15
4904973--4905004	16	2.0	16	100	0	64	25	12	6	56	1.59
4905186--4905228	17	2.5	17	80	3	50	62	0	6	30	1.21
4905373--4905411	3	13.0	3	94	0	69	64	0	0	35	0.94
4912305--4912347	22	2.0	22	95	0	77	53	6	4	34	1.49
4912306--4912353	22	2.3	20	86	10	62	52	6	6	35	1.52
4912384--4912421	21	1.9	19	85	15	51	50	7	10	31	1.66
4912384--4912483	22	4.7	21	78	9	87	49	7	8	36	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4913546--4913573	2	14.0	2	100	0	56	50	0	0	50	1.00
4915804--4915846	21	2.0	21	81	0	50	41	0	2	55	1.12
4916716--4917047	58	5.7	58	82	6	361	40	9	6	43	1.65
4916716--4917035	178	1.8	176	83	6	432	39	10	7	43	1.66
4917602--4917660	31	1.9	31	89	6	93	49	15	11	23	1.77
4917969--4918001	6	5.8	6	92	7	52	84	0	0	15	0.61
4917969--4918004	16	2.2	16	90	9	56	86	0	0	13	0.58
4917960--4918006	22	2.2	21	88	3	67	80	0	4	14	0.85
4917995--4918080	20	4.2	20	76	14	77	65	0	5	29	1.16
4918027--4918193	17	10.2	16	68	17	60	65	0	4	29	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91