Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: Chr9 Parameters: 2 7 7 80 10 50 1000 Length: 48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  100  of  135  ( 16172 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37154140--37154174
11
3.3
11
88
4
54
74
0
5
20
1.02
37169138--37169354
30
7.2
30
78
6
161
35
17
24
21
1.95
37169200--37169346
60
2.5
60
91
4
226
32
20
26
20
1.97
37182887--37182963
37
2.1
37
92
0
127
41
5
10
42
1.61
37185473--37185545
30
2.5
30
82
14
98
39
0
1
58
1.06
37185476--37185546
24
3.0
23
83
8
79
38
0
1
60
1.06
37194378--37194528
38
4.0
38
82
1
160
28
20
20
30
1.98
37194378--37194528
76
2.0
76
81
2
178
28
20
20
30
1.98
37196302--37196326
5
5.0
5
100
0
50
20
0
0
80
0.72
37200780--37200810
5
6.0
5
96
3
53
22
0
0
77
0.77
37204411--37204465
23
2.4
23
78
0
65
49
16
10
23
1.77
37204539--37204565
13
2.1
13
100
0
54
62
22
14
0
1.31
37208577--37208634
28
2.1
28
96
0
107
39
15
0
44
1.47
37209569--37209608
20
2.0
20
90
0
62
27
10
12
50
1.72
37209554--37209620
34
1.9
35
90
3
109
31
8
13
46
1.74
37209548--37209624
14
5.0
15
71
20
52
33
9
14
42
1.77
37210629--37210677
22
2.1
23
82
14
57
30
8
6
55
1.54
37211291--37211350
30
2.0
29
83
3
75
26
11
18
43
1.84
37211887--37211949
29
2.2
29
85
5
83
68
0
0
31
0.90
37213355--37213395
21
2.0
21
90
0
64
0
19
7
73
1.07
37213905--37214095
63
3.0
63
79
5
217
29
19
24
26
1.98
37216462--37216512
26
2.0
26
84
0
66
35
3
17
43
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37221346--37221392
21
2.2
22
84
3
60
48
2
2
46
1.25
37222673--37222734
27
2.3
27
77
0
70
16
22
32
29
1.95
37222813--37222863
19
2.6
19
84
9
59
72
1
23
1
1.05
37222813--37222867
21
2.7
19
81
16
58
70
1
25
1
1.06
37225808--37225874
27
2.4
27
92
2
116
53
8
0
37
1.32
37226009--37226129
22
4.9
26
72
18
114
52
13
1
32
1.50
37226008--37226167
49
3.4
49
83
7
185
52
13
1
31
1.51
37226033--37226268
19
11.1
21
70
20
136
55
12
1
30
1.47
37226101--37226287
101
1.9
101
91
2
313
56
13
1
29
1.44
37226009--37226270
41
6.1
41
70
19
130
54
12
1
31
1.48
37226123--37226339
102
2.1
98
83
11
260
55
12
1
30
1.45
37226435--37226472
3
13.3
3
83
10
53
0
31
0
68
0.90
37226436--37226472
14
2.6
14
91
0
65
0
32
0
67
0.91
37227161--37227601
220
2.0
221
99
0
875
42
8
8
40
1.65
37236519--37236568
20
2.6
19
73
17
50
68
4
16
12
1.35
37237669--37237750
41
2.0
41
97
0
155
52
7
12
28
1.65
37237766--37237851
43
2.0
43
100
0
172
41
4
20
32
1.73
37239263--37239346
34
2.5
34
84
1
107
40
15
4
39
1.68
37240422--37240446
12
2.1
12
100
0
50
16
0
16
68
1.22
37243071--37243476
203
2.0
203
99
0
796
30
19
1
48
1.60
37257897--37257949
18
2.8
19
91
5
90
37
11
18
32
1.87
37258136--37258175
20
2.1
19
86
9
55
5
17
17
60
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37259190--37259326
70
1.9
71
92
1
231
27
16
18
36
1.93
37260362--37260396
16
2.2
16
89
0
52
17
17
22
42
1.88
37262946--37262985
21
1.9
21
85
10
55
70
0
12
17
1.18
37262953--37263019
21
3.2
22
85
8
77
73
0
16
10
1.10
37262984--37263020
16
2.3
16
85
0
56
78
0
18
2
0.87
37265363--37265602
46
5.1
46
82
5
291
26
17
27
28
1.98
37265852--37265891
21
1.9
21
89
0
62
32
5
37
25
1.77
37266326--37266381
19
2.9
19
97
0
103
39
10
19
30
1.86
37266328--37266404
19
3.7
22
87
6
76
38
9
18
33
1.82
37267248--37267497
24
10.7
24
70
15
157
34
5
4
55
1.44
37267241--37267413
70
2.5
69
80
9
190
32
5
5
56
1.45
37267300--37267337
11
3.4
11
80
20
51
34
2
2
60
1.24
37267207--37267488
69
4.1
68
75
14
206
35
5
4
54
1.46
37267546--37267590
23
2.0
23
90
0
72
31
6
4
57
1.44
37283658--37283720
29
2.2
29
94
0
108
42
9
20
26
1.83
37284697--37284742
21
2.2
21
96
3
85
63
6
19
10
1.48
37289131--37289170
20
2.0
20
85
5
53
40
5
10
45
1.60
37292609--37293582
490
2.0
490
96
0
1813
30
20
18
30
1.97
37294352--37294664
156
2.0
157
94
0
556
25
19
11
42
1.86
37300617--37300721
42
2.5
42
81
3
122
25
32
16
25
1.96
37306365--37306405
21
2.0
21
85
9
57
34
4
0
60
1.18
37306803--37307001
51
3.9
50
77
6
213
30
28
17
24
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37306803--37306995
102
1.9
102
87
3
273
30
27
17
24
1.97
37307230--37307288
30
2.0
30
83
6
75
28
18
13
38
1.89
37309716--37309797
42
2.0
42
85
4
112
30
24
14
30
1.95
37312579--37312610
16
2.0
16
93
0
55
25
15
0
59
1.36
37312828--37313026
51
3.9
50
77
6
204
30
27
17
24
1.97
37312828--37313020
102
1.9
102
86
3
264
30
26
17
24
1.97
37317382--37317466
43
2.0
44
83
2
109
24
25
22
27
2.00
37332039--37332097
22
2.6
22
76
10
57
28
0
5
66
1.13
37334068--37334230
75
2.2
76
89
1
247
52
11
7
28
1.64
37339873--37339933
29
2.2
26
77
13
61
44
1
1
52
1.20
37339898--37339941
22
2.0
21
83
12
54
40
0
0
59
0.98
37345612--37345784
51
3.4
49
73
13
136
30
26
15
28
1.95
37345638--37345783
50
2.9
51
80
5
170
30
26
15
27
1.96
37351570--37351623
28
2.0
28
88
3
83
44
7
3
44
1.49
37362673--37362721
21
2.3
21
89
0
71
18
26
32
22
1.97
37362983--37363033
26
2.0
26
96
0
93
39
15
7
37
1.77
37370731--37370840
35
3.1
35
84
2
141
38
29
19
13
1.90
37370680--37370856
70
2.5
69
74
8
169
38
32
15
13
1.87
37373012--37373079
30
2.2
31
84
2
84
47
7
19
26
1.75
37381411--37381450
9
4.4
9
93
0
62
25
10
25
40
1.86
37381511--37381591
29
2.8
29
96
0
144
29
8
17
44
1.78
37384261--37384321
31
2.0
32
90
6
99
21
45
1
31
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37384864--37384900
19
1.9
19
94
0
65
29
8
29
32
1.86
37391691--37391733
20
2.2
20
88
8
63
25
0
4
69
1.07
37394234--37394286
18
2.9
19
81
16
67
28
0
3
67
1.07
37400093--37400149
25
2.3
25
93
0
96
64
7
5
22
1.38
37401054--37401078
7
3.6
7
100
0
50
64
0
0
36
0.94
37401242--37401275
16
2.1
16
100
0
68
41
5
5
47
1.52
37406529--37406556
9
3.1
9
100
0
56
53
10
10
25
1.67
37406633--37406707
20
3.7
20
92
5
116
62
5
0
32
1.17
37406795--37407052
126
2.0
127
98
1
502
39
11
6
42
1.68
37407649--37408313
72
9.2
72
88
1
877
33
19
21
24
1.97
37407649--37408313
145
4.6
145
88
1
872
33
19
21
24
1.97
37407649--37408313
360
1.8
362
86
4
977
33
19
21
24
1.97
37409517--37409944
147
2.9
146
76
5
420
26
13
21
38
1.91
37411069--37411595
44
12.0
44
97
1
923
47
16
2
33
1.60
37413712--37413876
43
3.8
43
82
6
208
29
18
28
23
1.98
37414631--37414679
20
2.5
20
90
6
73
10
38
16
34
1.82
37414745--37414799
11
5.4
10
79
16
60
69
0
30
0
0.89
37414762--37414807
8
5.9
8
85
14
53
67
0
32
0
0.91
37414751--37414798
14
3.6
13
79
20
55
68
0
31
0
0.90
37417729--37417767
12
3.2
12
85
3
51
64
15
0
20
1.30
37426228--37426264
15
2.6
14
87
8
56
72
0
24
2
0.97
37435693--37435722
15
1.9
16
93
6
53
13
16
13
56
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37447347--37447374
13
2.2
13
100
0
56
21
7
28
42
1.79
37447389--37447515
50
2.5
50
75
5
130
22
28
22
26
1.99
37458079--37458144
13
5.5
13
76
20
81
36
0
15
48
1.45
37458077--37458146
23
3.0
23
97
0
131
37
0
15
47
1.46
37459043--37459069
5
5.4
5
100
0
54
18
0
0
81
0.69
37462532--37462556
4
6.2
4
100
0
50
72
0
0
28
0.86
37463517--37463568
23
2.3
23
89
0
77
34
1
15
48
1.56
37463526--37463568
13
3.5
13
75
18
56
34
2
16
46
1.60
37463524--37463570
23
2.0
23
95
0
85
36
2
17
44
1.60
37465067--37465120
20
2.7
20
94
0
90
20
22
5
51
1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135